Q5U3G8 (Q5U3G8_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Nei endonuclease VIII-like 3 (E. coli) EMBL AAH85550.1

Gene names

Name:

neil3 ZFIN ZDB-GENE-041114-18

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAH85550.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Danio

Protein attributes

Sequence length	550 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Molecular function	Endonuclease EMBL AAH85550.1 Hydrolase Nuclease
Gene Ontology (GO)
Biological_process	base-excision repair Inferred from electronic annotation. Source: InterPro nucleotide-excision repair Inferred from electronic annotation. Source: InterPro
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA-(apurinic or apyrimidinic site) lyase activity Inferred from electronic annotation. Source: InterPro damaged DNA binding Inferred from electronic annotation. Source: InterPro endonuclease activity Inferred from electronic annotation. Source: UniProtKB-KW hydrolase activity, hydrolyzing N-glycosyl compounds Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5U3G8 [UniParc]. Last modified December 7, 2004. Version 1. Checksum: 92663E81FAF35D9B	FASTA	550	61,684
	10 20 30 40 50 60 MVEGPGCTLN GEKIRARVQK RQKVLHIQGN ETKTTSDDGS RSSFQSFTGG EFTGVETLGK 70 80 90 100 110 120 ELFMYFGVRA LRLHFGMNGS MRINPLKKDL HGKPPVLVIQ LTNDAICFFD TTVEIRLSED 130 140 150 160 170 180 CEQKVRAMEA LDICSPKFSF SRAVEAVKTE RARMLCDVLL DQTVLPGVGN IIKNEALFDS 190 200 210 220 230 240 GLNPAVKVSQ LTDEQVHHLV KMTRDFTLLF YKCRKNGSPL YKHYKVYKRP NCGQCSGTVT 250 260 270 280 290 300 VCRLGDNGRM TYYCQRCQTG DPSEVNISKL LTRNSLIGWV YQGGMSSSEH VAKQEEEEWA 310 320 330 340 350 360 CSLCTLINRP FNKHCDACMS PRPDEPQKLE HSPLSPDLIR YPCNSFSKPL QEIKMNRRAA 370 380 390 400 410 420 FGTTTLVLTS LSAKPDSPSS PAISQAHTPE TMRGLSTHGN WQRKSPCNGV SGMQFKGNEP 430 440 450 460 470 480 CKRESPTDHS QPNKRMKTTN GTFSGGNIKH ISSSHHRPCT QRVVTKEGEN KGRQFYTCSL 490 500 510 520 530 540 PRETQCNFFE WADLHFPMCH HGKRTVMKTV LKLGPNNGRN FYTCPVKMGK QCNFFQWAEN 550 GPGISILPGC

References

[1]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Ovary EMBL AAH85550.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC085550 mRNA. Translation: AAH85550.1.
IPI	IPI00837209.
RefSeq	NP_001007336.1. NM_001007335.1.
UniGene	Dr.28324.
3D structure databases
ProteinModelPortal	Q5U3G8.
ModBase	Search...
Proteomic databases
PRIDE	Q5U3G8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	492463.
KEGG	dre:492463.
Organism-specific databases
CTD	55247.
ZFIN	ZDB-GENE-041114-18. neil3.
Phylogenomic databases
HOGENOM	HOG000113754.
HOVERGEN	HBG052594.
InParanoid	Q5U3G8.
KO	K10569.
Gene expression databases
ArrayExpress	Q5U3G8.
Bgee	Q5U3G8.
Family and domain databases
InterPro	IPR015886. DNA_glyclase/AP_lyase_DNA-bd. IPR015887. DNA_glyclase_Znf_dom_DNA_BS. IPR012319. DNA_glycosylase/AP_lyase_cat. IPR010979. Ribosomal_S13-like_H2TH. IPR000214. Znf_DNA_glyclase/AP_lyase. IPR010666. Znf_GRF. IPR001876. Znf_RanBP2. [Graphical view]
Pfam	PF01149. Fapy_DNA_glyco. 1 hit. PF06831. H2TH. 1 hit. PF06839. zf-GRF. 2 hits. PF00641. zf-RanBP. 1 hit. [Graphical view]
SMART	SM00898. Fapy_DNA_glyco. 1 hit. SM00547. ZnF_RBZ. 1 hit. [Graphical view]
SUPFAM	SSF81624. Form_DNAglyc_cat. 1 hit. SSF46946. Ribosomal_H2TH. 1 hit.
PROSITE	PS51068. FPG_CAT. 1 hit. PS01242. ZF_FPG_1. 1 hit. PS51066. ZF_FPG_2. 1 hit. PS01358. ZF_RANBP2_1. 1 hit. PS50199. ZF_RANBP2_2. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	20865025.

Entry information

Entry name

Q5U3G8_DANRE

Accession

Primary (citable) accession number: Q5U3G8

Entry history

Integrated into UniProtKB/TrEMBL:	December 7, 2004
Last sequence update:	December 7, 2004
Last modified:	November 28, 2012
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)