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Q5U3G8

- Q5U3G8_DANRE

UniProt

Q5U3G8 - Q5U3G8_DANRE

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Protein
Submitted name:

Nei endonuclease VIII-like 3 (E. coli)

Gene
neil3
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. damaged DNA binding Source: InterPro
  2. DNA-(apurinic or apyrimidinic site) lyase activity Source: InterPro
  3. hydrolase activity, hydrolyzing N-glycosyl compounds Source: InterPro
  4. zinc ion binding Source: InterPro

GO - Biological processi

  1. base-excision repair Source: InterPro
  2. nucleotide-excision repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

EndonucleaseImported, Hydrolase, Nuclease

Names & Taxonomyi

Protein namesi
Submitted name:
Nei endonuclease VIII-like 3 (E. coli)Imported
Submitted name:
Neil3 proteinImported
Gene namesi
Name:neil3Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-041114-18. neil3.

PTM / Processingi

Proteomic databases

PRIDEiQ5U3G8.

Expressioni

Gene expression databases

BgeeiQ5U3G8.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000113754.
HOVERGENiHBG052594.
InParanoidiQ5U3G8.
KOiK10569.

Family and domain databases

InterProiIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF01149. Fapy_DNA_glyco. 1 hit.
PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 2 hits.
PF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTiSM00898. Fapy_DNA_glyco. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
[Graphical view]
SUPFAMiSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEiPS51068. FPG_CAT. 1 hit.
PS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5U3G8-1 [UniParc]FASTAAdd to Basket

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MVEGPGCTLN GEKIRARVQK RQKVLHIQGN ETKTTSDDGS RSSFQSFTGG    50
EFTGVETLGK ELFMYFGVRA LRLHFGMNGS MRINPLKKDL HGKPPVLVIQ 100
LTNDAICFFD TTVEIRLSED CEQKVRAMEA LDICSPKFSF SRAVEAVKTE 150
RARMLCDVLL DQTVLPGVGN IIKNEALFDS GLNPAVKVSQ LTDEQVHHLV 200
KMTRDFTLLF YKCRKNGSPL YKHYKVYKRP NCGQCSGTVT VCRLGDNGRM 250
TYYCQRCQTG DPSEVNISKL LTRNSLIGWV YQGGMSSSEH VAKQEEEEWA 300
CSLCTLINRP FNKHCDACMS PRPDEPQKLE HSPLSPDLIR YPCNSFSKPL 350
QEIKMNRRAA FGTTTLVLTS LSAKPDSPSS PAISQAHTPE TMRGLSTHGN 400
WQRKSPCNGV SGMQFKGNEP CKRESPTDHS QPNKRMKTTN GTFSGGNIKH 450
ISSSHHRPCT QRVVTKEGEN KGRQFYTCSL PRETQCNFFE WADLHFPMCH 500
HGKRTVMKTV LKLGPNNGRN FYTCPVKMGK QCNFFQWAEN GPGISILPGC 550
Length:550
Mass (Da):61,684
Last modified:December 7, 2004 - v1
Checksum:i92663E81FAF35D9B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC085550 mRNA. Translation: AAH85550.1.
BC164271 mRNA. Translation: AAI64271.1.
RefSeqiNP_001007336.1. NM_001007335.1.
UniGeneiDr.28324.

Genome annotation databases

GeneIDi492463.
KEGGidre:492463.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC085550 mRNA. Translation: AAH85550.1 .
BC164271 mRNA. Translation: AAI64271.1 .
RefSeqi NP_001007336.1. NM_001007335.1.
UniGenei Dr.28324.

3D structure databases

ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q5U3G8.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 492463.
KEGGi dre:492463.

Organism-specific databases

CTDi 55247.
ZFINi ZDB-GENE-041114-18. neil3.

Phylogenomic databases

HOGENOMi HOG000113754.
HOVERGENi HBG052594.
InParanoidi Q5U3G8.
KOi K10569.

Miscellaneous databases

NextBioi 20865025.

Gene expression databases

Bgeei Q5U3G8.

Family and domain databases

InterProi IPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view ]
Pfami PF01149. Fapy_DNA_glyco. 1 hit.
PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 2 hits.
PF00641. zf-RanBP. 1 hit.
[Graphical view ]
SMARTi SM00898. Fapy_DNA_glyco. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
[Graphical view ]
SUPFAMi SSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEi PS51068. FPG_CAT. 1 hit.
PS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: OvaryImported.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescueImported.

Entry informationi

Entry nameiQ5U3G8_DANRE
AccessioniPrimary (citable) accession number: Q5U3G8
Entry historyi
Integrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: June 11, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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