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Protein
Submitted name:

Nei endonuclease VIII-like 3 (E. coli)

Gene

neil3

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

EndonucleaseImported, Hydrolase, Nuclease

Names & Taxonomyi

Protein namesi
Submitted name:
Nei endonuclease VIII-like 3 (E. coli)Imported
Submitted name:
Neil3 proteinImported
Gene namesi
Name:neil3Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-041114-18. neil3.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000109273.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000113754.
HOVERGENiHBG052594.

Family and domain databases

InterProiIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF01149. Fapy_DNA_glyco. 1 hit.
PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 2 hits.
PF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTiSM00898. Fapy_DNA_glyco. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
[Graphical view]
SUPFAMiSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEiPS51068. FPG_CAT. 1 hit.
PS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5U3G8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVEGPGCTLN GEKIRARVQK RQKVLHIQGN ETKTTSDDGS RSSFQSFTGG
60 70 80 90 100
EFTGVETLGK ELFMYFGVRA LRLHFGMNGS MRINPLKKDL HGKPPVLVIQ
110 120 130 140 150
LTNDAICFFD TTVEIRLSED CEQKVRAMEA LDICSPKFSF SRAVEAVKTE
160 170 180 190 200
RARMLCDVLL DQTVLPGVGN IIKNEALFDS GLNPAVKVSQ LTDEQVHHLV
210 220 230 240 250
KMTRDFTLLF YKCRKNGSPL YKHYKVYKRP NCGQCSGTVT VCRLGDNGRM
260 270 280 290 300
TYYCQRCQTG DPSEVNISKL LTRNSLIGWV YQGGMSSSEH VAKQEEEEWA
310 320 330 340 350
CSLCTLINRP FNKHCDACMS PRPDEPQKLE HSPLSPDLIR YPCNSFSKPL
360 370 380 390 400
QEIKMNRRAA FGTTTLVLTS LSAKPDSPSS PAISQAHTPE TMRGLSTHGN
410 420 430 440 450
WQRKSPCNGV SGMQFKGNEP CKRESPTDHS QPNKRMKTTN GTFSGGNIKH
460 470 480 490 500
ISSSHHRPCT QRVVTKEGEN KGRQFYTCSL PRETQCNFFE WADLHFPMCH
510 520 530 540 550
HGKRTVMKTV LKLGPNNGRN FYTCPVKMGK QCNFFQWAEN GPGISILPGC
Length:550
Mass (Da):61,684
Last modified:December 7, 2004 - v1
Checksum:i92663E81FAF35D9B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085550 mRNA. Translation: AAH85550.1.
BC164271 mRNA. Translation: AAI64271.1.
RefSeqiNP_001007336.1. NM_001007335.1.
UniGeneiDr.28324.

Genome annotation databases

GeneIDi492463.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085550 mRNA. Translation: AAH85550.1.
BC164271 mRNA. Translation: AAI64271.1.
RefSeqiNP_001007336.1. NM_001007335.1.
UniGeneiDr.28324.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000109273.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi492463.

Organism-specific databases

CTDi55247.
ZFINiZDB-GENE-041114-18. neil3.

Phylogenomic databases

HOGENOMiHOG000113754.
HOVERGENiHBG052594.

Miscellaneous databases

NextBioi20865025.

Family and domain databases

InterProiIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF01149. Fapy_DNA_glyco. 1 hit.
PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 2 hits.
PF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTiSM00898. Fapy_DNA_glyco. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
[Graphical view]
SUPFAMiSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEiPS51068. FPG_CAT. 1 hit.
PS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: OvaryImported.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescueImported.

Entry informationi

Entry nameiQ5U3G8_DANRE
AccessioniPrimary (citable) accession number: Q5U3G8
Entry historyi
Integrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: June 24, 2015
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.