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Q5U3G8

- Q5U3G8_DANRE

UniProt

Q5U3G8 - Q5U3G8_DANRE

Protein
Submitted name:

Nei endonuclease VIII-like 3 (E. coli)

Gene

neil3

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 75 (01 Oct 2014)
      Sequence version 1 (07 Dec 2004)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. damaged DNA binding Source: InterPro
    2. DNA-(apurinic or apyrimidinic site) lyase activity Source: InterPro
    3. hydrolase activity, hydrolyzing N-glycosyl compounds Source: InterPro
    4. zinc ion binding Source: InterPro

    GO - Biological processi

    1. base-excision repair Source: InterPro
    2. nucleotide-excision repair Source: InterPro

    Keywords - Molecular functioni

    EndonucleaseImported, Hydrolase, Nuclease

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Nei endonuclease VIII-like 3 (E. coli)Imported
    Submitted name:
    Neil3 proteinImported
    Gene namesi
    Name:neil3Imported
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

    Organism-specific databases

    ZFINiZDB-GENE-041114-18. neil3.

    PTM / Processingi

    Proteomic databases

    PRIDEiQ5U3G8.

    Expressioni

    Gene expression databases

    BgeeiQ5U3G8.

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000113754.
    HOVERGENiHBG052594.
    InParanoidiQ5U3G8.
    KOiK10569.

    Family and domain databases

    InterProiIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
    IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
    IPR012319. DNA_glycosylase/AP_lyase_cat.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR000214. Znf_DNA_glyclase/AP_lyase.
    IPR010666. Znf_GRF.
    IPR001876. Znf_RanBP2.
    [Graphical view]
    PfamiPF01149. Fapy_DNA_glyco. 1 hit.
    PF06831. H2TH. 1 hit.
    PF06839. zf-GRF. 2 hits.
    PF00641. zf-RanBP. 1 hit.
    [Graphical view]
    SMARTiSM00898. Fapy_DNA_glyco. 1 hit.
    SM00547. ZnF_RBZ. 1 hit.
    [Graphical view]
    SUPFAMiSSF46946. SSF46946. 1 hit.
    SSF81624. SSF81624. 1 hit.
    PROSITEiPS51068. FPG_CAT. 1 hit.
    PS01242. ZF_FPG_1. 1 hit.
    PS51066. ZF_FPG_2. 1 hit.
    PS01358. ZF_RANBP2_1. 1 hit.
    PS50199. ZF_RANBP2_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5U3G8-1 [UniParc]FASTAAdd to Basket

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    MVEGPGCTLN GEKIRARVQK RQKVLHIQGN ETKTTSDDGS RSSFQSFTGG    50
    EFTGVETLGK ELFMYFGVRA LRLHFGMNGS MRINPLKKDL HGKPPVLVIQ 100
    LTNDAICFFD TTVEIRLSED CEQKVRAMEA LDICSPKFSF SRAVEAVKTE 150
    RARMLCDVLL DQTVLPGVGN IIKNEALFDS GLNPAVKVSQ LTDEQVHHLV 200
    KMTRDFTLLF YKCRKNGSPL YKHYKVYKRP NCGQCSGTVT VCRLGDNGRM 250
    TYYCQRCQTG DPSEVNISKL LTRNSLIGWV YQGGMSSSEH VAKQEEEEWA 300
    CSLCTLINRP FNKHCDACMS PRPDEPQKLE HSPLSPDLIR YPCNSFSKPL 350
    QEIKMNRRAA FGTTTLVLTS LSAKPDSPSS PAISQAHTPE TMRGLSTHGN 400
    WQRKSPCNGV SGMQFKGNEP CKRESPTDHS QPNKRMKTTN GTFSGGNIKH 450
    ISSSHHRPCT QRVVTKEGEN KGRQFYTCSL PRETQCNFFE WADLHFPMCH 500
    HGKRTVMKTV LKLGPNNGRN FYTCPVKMGK QCNFFQWAEN GPGISILPGC 550
    Length:550
    Mass (Da):61,684
    Last modified:December 7, 2004 - v1
    Checksum:i92663E81FAF35D9B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC085550 mRNA. Translation: AAH85550.1.
    BC164271 mRNA. Translation: AAI64271.1.
    RefSeqiNP_001007336.1. NM_001007335.1.
    UniGeneiDr.28324.

    Genome annotation databases

    GeneIDi492463.
    KEGGidre:492463.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC085550 mRNA. Translation: AAH85550.1 .
    BC164271 mRNA. Translation: AAI64271.1 .
    RefSeqi NP_001007336.1. NM_001007335.1.
    UniGenei Dr.28324.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q5U3G8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 492463.
    KEGGi dre:492463.

    Organism-specific databases

    CTDi 55247.
    ZFINi ZDB-GENE-041114-18. neil3.

    Phylogenomic databases

    HOGENOMi HOG000113754.
    HOVERGENi HBG052594.
    InParanoidi Q5U3G8.
    KOi K10569.

    Miscellaneous databases

    NextBioi 20865025.

    Gene expression databases

    Bgeei Q5U3G8.

    Family and domain databases

    InterProi IPR015886. DNA_glyclase/AP_lyase_DNA-bd.
    IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
    IPR012319. DNA_glycosylase/AP_lyase_cat.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR000214. Znf_DNA_glyclase/AP_lyase.
    IPR010666. Znf_GRF.
    IPR001876. Znf_RanBP2.
    [Graphical view ]
    Pfami PF01149. Fapy_DNA_glyco. 1 hit.
    PF06831. H2TH. 1 hit.
    PF06839. zf-GRF. 2 hits.
    PF00641. zf-RanBP. 1 hit.
    [Graphical view ]
    SMARTi SM00898. Fapy_DNA_glyco. 1 hit.
    SM00547. ZnF_RBZ. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46946. SSF46946. 1 hit.
    SSF81624. SSF81624. 1 hit.
    PROSITEi PS51068. FPG_CAT. 1 hit.
    PS01242. ZF_FPG_1. 1 hit.
    PS51066. ZF_FPG_2. 1 hit.
    PS01358. ZF_RANBP2_1. 1 hit.
    PS50199. ZF_RANBP2_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: OvaryImported.
    2. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: PCR rescueImported.

    Entry informationi

    Entry nameiQ5U3G8_DANRE
    AccessioniPrimary (citable) accession number: Q5U3G8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 7, 2004
    Last sequence update: December 7, 2004
    Last modified: October 1, 2014
    This is version 75 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)