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Protein

Protein YIF1B

Gene

yif1b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YIF1B
Alternative name(s):
YIP1-interacting factor homolog B
Gene namesi
Name:yif1b
ORF Names:zgc:103562
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Unplaced

Organism-specific databases

ZFINiZDB-GENE-041114-16. yif1b.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 146CytoplasmicSequence analysisAdd BLAST146
Transmembranei147 – 167HelicalSequence analysisAdd BLAST21
Topological domaini168 – 182ExtracellularSequence analysisAdd BLAST15
Transmembranei183 – 203HelicalSequence analysisAdd BLAST21
Topological domaini204 – 212CytoplasmicSequence analysis9
Transmembranei213 – 233HelicalSequence analysisAdd BLAST21
Topological domaini234 – 236ExtracellularSequence analysis3
Transmembranei237 – 257HelicalSequence analysisAdd BLAST21
Topological domaini258 – 282CytoplasmicSequence analysisAdd BLAST25
Transmembranei283 – 303HelicalSequence analysisAdd BLAST21
Topological domaini304ExtracellularSequence analysis1

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003072611 – 304Protein YIF1BAdd BLAST304

Proteomic databases

PaxDbiQ5U3G6.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000059284.

Family & Domainsi

Sequence similaritiesi

Belongs to the YIF1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3094. Eukaryota.
COG5197. LUCA.
HOGENOMiHOG000234333.
HOVERGENiHBG053252.
InParanoidiQ5U3G6.
KOiK20362.
PhylomeDBiQ5U3G6.

Family and domain databases

InterProiIPR005578. Yif1_fam.
[Graphical view]
PANTHERiPTHR14083. PTHR14083. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5U3G6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMEYPNQSGF RQRKLLPQVR MRGSAMEPSD PTQLFDDTSS GVNKHEPGRV
60 70 80 90 100
GKSPDVFSGQ NLLSDPMSNL AMAYGSSLAS HGKEMMDKNL DRFIPISKLK
110 120 130 140 150
YYFAVDTVYV GKKLGLLVFP YMHDNWEVNY QQDTPVAPRF DINAPDLYIP
160 170 180 190 200
VMGFITYVLV AGLALGTQNR FSPEILGIQA SSALVWLIIE VLAVLLSLYL
210 220 230 240 250
VTVNTDLTTI DLVAFSGYKY VGMIVGVVAG LLFGRTGYYL ALLWFCASIF
260 270 280 290 300
VFTIRTLRLK ILSEAAAEGR LVRGTKNQLR MYLTMAIAAA QPVFMYWLTF

HLVR
Length:304
Mass (Da):34,029
Last modified:May 30, 2006 - v2
Checksum:i80D23F2CDD54D19E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085552 mRNA. Translation: AAH85552.2.
RefSeqiNP_001007335.2. NM_001007334.1.
UniGeneiDr.37370.

Genome annotation databases

GeneIDi492462.
KEGGidre:492462.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085552 mRNA. Translation: AAH85552.2.
RefSeqiNP_001007335.2. NM_001007334.1.
UniGeneiDr.37370.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000059284.

Proteomic databases

PaxDbiQ5U3G6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi492462.
KEGGidre:492462.

Organism-specific databases

CTDi90522.
ZFINiZDB-GENE-041114-16. yif1b.

Phylogenomic databases

eggNOGiKOG3094. Eukaryota.
COG5197. LUCA.
HOGENOMiHOG000234333.
HOVERGENiHBG053252.
InParanoidiQ5U3G6.
KOiK20362.
PhylomeDBiQ5U3G6.

Miscellaneous databases

PROiQ5U3G6.

Family and domain databases

InterProiIPR005578. Yif1_fam.
[Graphical view]
PANTHERiPTHR14083. PTHR14083. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYIF1B_DANRE
AccessioniPrimary (citable) accession number: Q5U3G6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: May 30, 2006
Last modified: November 2, 2016
This is version 58 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.