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Protein

Protein YIF1B

Gene

yif1b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YIF1B
Alternative name(s):
YIP1-interacting factor homolog B
Gene namesi
Name:yif1b
ORF Names:zgc:103562
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Unplaced

Organism-specific databases

ZFINiZDB-GENE-041114-16. yif1b.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 146146CytoplasmicSequence analysisAdd
BLAST
Transmembranei147 – 16721HelicalSequence analysisAdd
BLAST
Topological domaini168 – 18215ExtracellularSequence analysisAdd
BLAST
Transmembranei183 – 20321HelicalSequence analysisAdd
BLAST
Topological domaini204 – 2129CytoplasmicSequence analysis
Transmembranei213 – 23321HelicalSequence analysisAdd
BLAST
Topological domaini234 – 2363ExtracellularSequence analysis
Transmembranei237 – 25721HelicalSequence analysisAdd
BLAST
Topological domaini258 – 28225CytoplasmicSequence analysisAdd
BLAST
Transmembranei283 – 30321HelicalSequence analysisAdd
BLAST
Topological domaini304 – 3041ExtracellularSequence analysis

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 304304Protein YIF1BPRO_0000307261Add
BLAST

Proteomic databases

PaxDbiQ5U3G6.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000059284.

Family & Domainsi

Sequence similaritiesi

Belongs to the YIF1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3094. Eukaryota.
COG5197. LUCA.
HOGENOMiHOG000234333.
HOVERGENiHBG053252.
InParanoidiQ5U3G6.
PhylomeDBiQ5U3G6.

Family and domain databases

InterProiIPR005578. Yif1_fam.
[Graphical view]
PANTHERiPTHR14083. PTHR14083. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5U3G6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMEYPNQSGF RQRKLLPQVR MRGSAMEPSD PTQLFDDTSS GVNKHEPGRV
60 70 80 90 100
GKSPDVFSGQ NLLSDPMSNL AMAYGSSLAS HGKEMMDKNL DRFIPISKLK
110 120 130 140 150
YYFAVDTVYV GKKLGLLVFP YMHDNWEVNY QQDTPVAPRF DINAPDLYIP
160 170 180 190 200
VMGFITYVLV AGLALGTQNR FSPEILGIQA SSALVWLIIE VLAVLLSLYL
210 220 230 240 250
VTVNTDLTTI DLVAFSGYKY VGMIVGVVAG LLFGRTGYYL ALLWFCASIF
260 270 280 290 300
VFTIRTLRLK ILSEAAAEGR LVRGTKNQLR MYLTMAIAAA QPVFMYWLTF

HLVR
Length:304
Mass (Da):34,029
Last modified:May 30, 2006 - v2
Checksum:i80D23F2CDD54D19E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085552 mRNA. Translation: AAH85552.2.
RefSeqiNP_001007335.2. NM_001007334.1.
UniGeneiDr.37370.

Genome annotation databases

GeneIDi492462.
KEGGidre:492462.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085552 mRNA. Translation: AAH85552.2.
RefSeqiNP_001007335.2. NM_001007334.1.
UniGeneiDr.37370.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000059284.

Proteomic databases

PaxDbiQ5U3G6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi492462.
KEGGidre:492462.

Organism-specific databases

CTDi90522.
ZFINiZDB-GENE-041114-16. yif1b.

Phylogenomic databases

eggNOGiKOG3094. Eukaryota.
COG5197. LUCA.
HOGENOMiHOG000234333.
HOVERGENiHBG053252.
InParanoidiQ5U3G6.
PhylomeDBiQ5U3G6.

Miscellaneous databases

NextBioi20865024.
PROiQ5U3G6.

Family and domain databases

InterProiIPR005578. Yif1_fam.
[Graphical view]
PANTHERiPTHR14083. PTHR14083. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Ovary.

Entry informationi

Entry nameiYIF1B_DANRE
AccessioniPrimary (citable) accession number: Q5U3G6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: May 30, 2006
Last modified: November 11, 2015
This is version 55 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.