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Protein

Battenin

Gene

cln3

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
BatteninUniRule annotation
Gene namesi
Name:cln3Imported
Synonyms:zgc:92244Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 3

Organism-specific databases

ZFINiZDB-GENE-041114-174. cln3.

Subcellular locationi

  • Lysosome membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei26 – 4621HelicalUniRule annotationAdd
BLAST
Transmembranei89 – 11022HelicalUniRule annotationAdd
BLAST
Transmembranei117 – 13721HelicalUniRule annotationAdd
BLAST
Transmembranei143 – 16725HelicalUniRule annotationAdd
BLAST
Transmembranei179 – 19820HelicalUniRule annotationAdd
BLAST
Transmembranei204 – 22421HelicalUniRule annotationAdd
BLAST
Transmembranei290 – 30819HelicalUniRule annotationAdd
BLAST
Transmembranei328 – 34720HelicalUniRule annotationAdd
BLAST
Transmembranei354 – 37421HelicalUniRule annotationAdd
BLAST
Transmembranei380 – 40425HelicalUniRule annotationAdd
BLAST
Transmembranei416 – 43722HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSDARG00000037865.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000055169.

Family & Domainsi

Sequence similaritiesi

Belongs to the battenin family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixUniRule annotation

Phylogenomic databases

eggNOGiKOG3880. Eukaryota.
ENOG410XT4Z. LUCA.
GeneTreeiENSGT00390000003249.
HOGENOMiHOG000164765.
HOVERGENiHBG017297.
KOiK12389.
OMAiVYIAEYA.
OrthoDBiEOG091G07YG.
PhylomeDBiQ5U392.
TreeFamiTF314055.

Family and domain databases

InterProiIPR003492. Battenin_disease_Cln3.
IPR018460. Battenin_disease_Cln3_subgr.
IPR020846. MFS_dom.
[Graphical view]
PANTHERiPTHR10981. PTHR10981. 2 hits.
PfamiPF02487. CLN3. 1 hit.
[Graphical view]
PIRSFiPIRSF015974. CLN3_BTN1. 1 hit.
PRINTSiPR01315. BATTENIN.
SUPFAMiSSF103473. SSF103473. 3 hits.

Sequencei

Sequence statusi: Complete.

Q5U392-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDRSVNSGTA STSDTEGRCQ RWRNCVAFWL LGLCNNFAYV VMLSAAHDIL
60 70 80 90 100
QKQESQNTTA PSPAPNGTNI EFRNSSNSSR YDCNPVSTAA VLLADILPTL
110 120 130 140 150
LIKLTAPFYI HKVPYGFRVL VCFFTAVVSF LMVSFSSTIS MSIIGVIFAS
160 170 180 190 200
VSSGLGELSF LSLSVFFSSD VLSGWGSGTG AAGVAGALLY SALTQAGLTP
210 220 230 240 250
QVTLWIMLVV PVILAVSYFV LLVFPHSFPQ WRCPEVSQSL SRGLNSEERR
260 270 280 290 300
ALIEEDTDTD EDSEPALEDQ DDKHIGPLTF TEKKYIIKGL LKFIFPLALV
310 320 330 340 350
YFAEYFINQG LMELLYFPDS RLSHAEQYRW YQTVYQIGVF VSRTSLFCFK
360 370 380 390 400
IRKIFLMSLL QCANAVLLVF AVYYQFLPNI SVVFVIIAFE GLLGGAAYVN
410 420 430 440
TFFFIREESV EREREFAMAT ATVGDSLGIA FSAAAAFPVH HYFCSL
Length:446
Mass (Da):49,431
Last modified:December 7, 2004 - v1
Checksum:i13780ACB55FB2488
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX537342 Genomic DNA. No translation available.
BC085653 mRNA. Translation: AAH85653.1.
RefSeqiNP_001007307.1. NM_001007306.1.
UniGeneiDr.79095.

Genome annotation databases

EnsembliENSDART00000055170; ENSDARP00000055169; ENSDARG00000037865.
GeneIDi492340.
KEGGidre:492340.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX537342 Genomic DNA. No translation available.
BC085653 mRNA. Translation: AAH85653.1.
RefSeqiNP_001007307.1. NM_001007306.1.
UniGeneiDr.79095.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000055169.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000055170; ENSDARP00000055169; ENSDARG00000037865.
GeneIDi492340.
KEGGidre:492340.

Organism-specific databases

CTDi1201.
ZFINiZDB-GENE-041114-174. cln3.

Phylogenomic databases

eggNOGiKOG3880. Eukaryota.
ENOG410XT4Z. LUCA.
GeneTreeiENSGT00390000003249.
HOGENOMiHOG000164765.
HOVERGENiHBG017297.
KOiK12389.
OMAiVYIAEYA.
OrthoDBiEOG091G07YG.
PhylomeDBiQ5U392.
TreeFamiTF314055.

Gene expression databases

BgeeiENSDARG00000037865.

Family and domain databases

InterProiIPR003492. Battenin_disease_Cln3.
IPR018460. Battenin_disease_Cln3_subgr.
IPR020846. MFS_dom.
[Graphical view]
PANTHERiPTHR10981. PTHR10981. 2 hits.
PfamiPF02487. CLN3. 1 hit.
[Graphical view]
PIRSFiPIRSF015974. CLN3_BTN1. 1 hit.
PRINTSiPR01315. BATTENIN.
SUPFAMiSSF103473. SSF103473. 3 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiQ5U392_DANRE
AccessioniPrimary (citable) accession number: Q5U392
Entry historyi
Integrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: September 7, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.