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Unreviewed, UniProtKB/TrEMBL Q5U342 (Q5U342_RAT)

Last modified February 9, 2010. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta EMBL AAH85729.1
Submitted name:
    Nuclear factor of kappa light chain gene enhancer in B-cells inhibitor, beta EMBL EDM07877.1
Gene names
Name: Nfkbib RGD 621887
ORF Names: rCG_54343 EMBL EDM07877.1
OrganismRattus norvegicus (Rat) EMBL AAH85729.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

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Protein attributes

Sequence length359 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level.

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Sequences

Sequence LengthMass (Da)Tools
Q5U342-1 [UniParc].

Last modified December 7, 2004. Version 1.
Checksum: 5660228F5C72B1A1

FASTA35938,082
        10         20         30         40         50         60 
MAGVACLGKT ADADEWCDSG LGSLGPDAAA PGGPGLVAEL SPELSWAPLV FGYVTEDGDT 

        70         80         90        100        110        120 
ALHLAVIHQH EPFLDFLLGF SAGTEYLDLQ NDLGQTALHL AAILGEASTV EKLYAAGAGV 

       130        140        150        160        170        180 
LVTERGGHTA LHLACRVRAH TCAYVLLQPR PSHPRDASDT YLTQSQDHTP DTSHAPVATD 

       190        200        210        220        230        240 
PQPNPGNEEE LRDEDWRLQL EAENYDGHTP LHVAVIHKDA EMVQLLRDAG ADLNKPEPTC 

       250        260        270        280        290        300 
GRTPLHLAVE GQAAGVLALL LKAGADPTAR MYGGRTPLGS ALLRPNPVLA RLLRAHGAPE 

       310        320        330        340        350 
PEDEDDKLSP CSNSSSDSDS DNRDEGDEYD DIVVHSRRSQ NQPPPSPAAK PLPDDPNPA

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References

« Hide 'large scale' references
[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Testis EMBL AAH85729.1.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed: 15632090] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM07877.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM07877.1.

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC085729 mRNA. Translation: AAH85729.1.
CH473979 Genomic DNA. Translation: EDM07877.1.
IPIIPI00480740.
RefSeqNP_110494.2.
UniGeneRn.8395

3D structure databases

SMRQ5U342. Positions 50-303.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ5U342.

Genome annotation databases

EnsemblENSRNOT00000027212; ENSRNOP00000027212; ENSRNOG00000020063; Rattus norvegicus. [Genome view]
GeneID81525.
KEGGrno:81525.
NMPDRfig|10116.3.peg.1421.

Organism-specific databases

CTD81525.

Phylogenomic databases

eggNOGroNOG08985.
HOVERGENQ5U342.
InParanoidQ5U342.
OMAYEGHTPL.
OrthoDBEOG973S9Q.
PhylomeDBQ5U342.

Gene expression databases

ArrayExpressQ5U342.
GenevestigatorQ5U342.

Family and domain databases

InterProIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR015681. NF_kB_inhbitor.
[Graphical view]
Gene3DG3DSA:1.25.40.20. ANK. 1 hit.
PANTHERPTHR18958:SF236. NF_kB_inhbitor. 1 hit.
PfamPF00023. Ank. 2 hits.
[Graphical view]
SMARTSM00248. ANK. 6 hits.
[Graphical view]
PROSITEPS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 4 hits.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio615057.

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Entry information

Entry nameQ5U342_RAT
AccessionPrimary (citable) accession number: Q5U342
Entry history
Integrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: February 9, 2010
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information