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Protein

Armadillo repeat-containing X-linked protein 1

Gene

Armcx1

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Armadillo repeat-containing X-linked protein 1
Gene namesi
Name:Armcx1
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome X

Organism-specific databases

RGDi1561629. Armcx1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei7 – 2923HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 461461Armadillo repeat-containing X-linked protein 1PRO_0000191363Add
BLAST

Proteomic databases

PaxDbiQ5U310.
PRIDEiQ5U310.

Expressioni

Gene expression databases

BgeeiENSRNOG00000037709.
GenevisibleiQ5U310. RN.

Structurei

3D structure databases

ProteinModelPortaliQ5U310.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati203 – 24341ARM 1Add
BLAST
Repeati245 – 28440ARM 2Add
BLAST
Repeati366 – 40641ARM 3Add
BLAST

Sequence similaritiesi

Contains 3 ARM repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IU7C. Eukaryota.
ENOG41116BC. LUCA.
GeneTreeiENSGT00550000074488.
HOGENOMiHOG000231611.
HOVERGENiHBG080349.
InParanoidiQ5U310.
OMAiHPTRSGA.
OrthoDBiEOG091G0PCU.
PhylomeDBiQ5U310.
TreeFamiTF335652.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR006911. ARM-rpt_dom.
IPR016024. ARM-type_fold.
IPR000225. Armadillo.
[Graphical view]
PfamiPF04826. Arm_2. 1 hit.
[Graphical view]
SMARTiSM00185. ARM. 2 hits.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
PROSITEiPS50176. ARM_REPEAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5U310-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRTREAGCV AAGMVIGAGA CYCVYRLTWG KDENEKLWDD EDEEEEEEEE
60 70 80 90 100
SCSGKPEIGG KTVKERKTHV GVGAGAKPQD DSKSKAEANV GPENGPDVKK
110 120 130 140 150
EVYPESHSEG GLEAKAKALF KSLKEQASAK AGRGIRFPNI SRIRTLTSSL
160 170 180 190 200
PCPGGRGGGC HPGRTGSRAR NRTSGKVKRK NRSKSNKAPA TAWPVRRGKF
210 220 230 240 250
SFPYKIDDIL SAPDLQKVLN ILERTNDPFT QEVALVTLGN NAAYSFNQNA
260 270 280 290 300
IRELGGVPII AKLIKTRDPI IREKTYNALN NLSVNSENQG KIKTYISQVC
310 320 330 340 350
DDTMVCRLDS AVQMAGLRLL TNMTVTNHYQ HLLSYSFPDF FALLFLGNHF
360 370 380 390 400
TKIQTMKLII NFTENPAMTR ELVSCKVPSE LISLFNKEWD REILLNILTL
410 420 430 440 450
FENINDNIKS EGLASSRKEF SRSSLFFLFK ESGVCVKKIK ALASHKDLVV
460
KVKVLKVLTK L
Length:461
Mass (Da):51,049
Last modified:December 7, 2004 - v1
Checksum:iB3E2E9836CD950C4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085780 mRNA. Translation: AAH85780.1.
RefSeqiNP_001019538.1. NM_001024367.1.
XP_006257304.1. XM_006257242.2.
XP_006257305.1. XM_006257243.2.
XP_006257315.1. XM_006257253.2.
XP_008756725.1. XM_008758503.1.
XP_008756726.1. XM_008758504.1.
UniGeneiRn.140506.

Genome annotation databases

EnsembliENSRNOT00000029833; ENSRNOP00000030952; ENSRNOG00000037709.
ENSRNOT00000052422; ENSRNOP00000043675; ENSRNOG00000046862.
GeneIDi102554790.
501619.
KEGGirno:102554790.
rno:501619.
UCSCiRGD:1561629. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085780 mRNA. Translation: AAH85780.1.
RefSeqiNP_001019538.1. NM_001024367.1.
XP_006257304.1. XM_006257242.2.
XP_006257305.1. XM_006257243.2.
XP_006257315.1. XM_006257253.2.
XP_008756725.1. XM_008758503.1.
XP_008756726.1. XM_008758504.1.
UniGeneiRn.140506.

3D structure databases

ProteinModelPortaliQ5U310.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ5U310.
PRIDEiQ5U310.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000029833; ENSRNOP00000030952; ENSRNOG00000037709.
ENSRNOT00000052422; ENSRNOP00000043675; ENSRNOG00000046862.
GeneIDi102554790.
501619.
KEGGirno:102554790.
rno:501619.
UCSCiRGD:1561629. rat.

Organism-specific databases

CTDi51309.
RGDi1561629. Armcx1.

Phylogenomic databases

eggNOGiENOG410IU7C. Eukaryota.
ENOG41116BC. LUCA.
GeneTreeiENSGT00550000074488.
HOGENOMiHOG000231611.
HOVERGENiHBG080349.
InParanoidiQ5U310.
OMAiHPTRSGA.
OrthoDBiEOG091G0PCU.
PhylomeDBiQ5U310.
TreeFamiTF335652.

Miscellaneous databases

PROiQ5U310.

Gene expression databases

BgeeiENSRNOG00000037709.
GenevisibleiQ5U310. RN.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR006911. ARM-rpt_dom.
IPR016024. ARM-type_fold.
IPR000225. Armadillo.
[Graphical view]
PfamiPF04826. Arm_2. 1 hit.
[Graphical view]
SMARTiSM00185. ARM. 2 hits.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
PROSITEiPS50176. ARM_REPEAT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiARMX1_RAT
AccessioniPrimary (citable) accession number: Q5U310
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 7, 2004
Last modified: September 7, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.