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Unreviewed, UniProtKB/TrEMBL Q5U2Z4 (Q5U2Z4_RAT)

Last modified November 3, 2009. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100 EMBL AAH85800.1
Gene names
Name: Nfkb2 EMBL AAH85800.1 RGD 1307189
OrganismRattus norvegicus (Rat) EMBL AAH85800.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

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Protein attributes

Sequence length898 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at transcript level.

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General annotation (Comments)

Sequence similarities

Contains 1 RHD (Rel-like) domain. RuleBase RU003997V0

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Sequences

Sequence LengthMass (Da)Tools
Q5U2Z4-1 [UniParc].

Last modified December 7, 2004. Version 1.
Checksum: 13E06137B24A4CBC

FASTA89896,739
        10         20         30         40         50         60 
MDRCYDPGLD GIPEYDDFEF SPSIVEPKDP APETADGPYL VIVEQPKQRG FRFRYGCEGP 

        70         80         90        100        110        120 
SHGGLPGASS EKGRKTYPTV KICNYEGPAK IEVDLVTHSD PPRAHAHSLV GKQCSELGVC 

       130        140        150        160        170        180 
AVSVGPKDMT AQFNNLGVLH VTKKNMMEIM IQKLQRQRLR SKPQGLTEAE RRELEQEAKE 

       190        200        210        220        230        240 
LKKVMDLSIV RLRFSAFLRA SDGSFSLPLK PVISQPIHDS KSPGASNLKI SRMDKTAGSV 

       250        260        270        280        290        300 
RGGDEVYLLC DKVQKDDIEV RFYEDDENGW QAFGDFSPTD VHKQYAIVFR TPPYHKMKIE 

       310        320        330        340        350        360 
RPVTVFLQLK RKRGGDVSDS KQFTYYPLVE DKEEVQRKRR KALPTFSQPF GGGSHMGGGS 

       370        380        390        400        410        420 
GGSAGGYGGA GGGGSLGFFS SFAYSPYQSG AAPMGCFPGG GGGAQMAGSG RDAEAGEAEE 

       430        440        450        460        470        480 
QPRAPSEAPQ SEQQALDTLQ RAREYNARLF GLAQRSARAL LDYGVTADAR ALLAGQRHLL 

       490        500        510        520        530        540 
MAQDENGDTP LHLAIIHGQT GVIEQIAQVI YHAQYLGVIN LTNHLHQTPL HLAVITGQTR 

       550        560        570        580        590        600 
VVSFLLQVGA DPTLLDRHGD SAVHLALRAG AAAPDLLQAV LHSGAHALPQ MLHMPDFEGL 

       610        620        630        640        650        660 
YPVHLAVHAR SPECLDLLVD CGAEVEAAER QGGRTPLHLA TEMEELGLVT HLVTKLHANV 

       670        680        690        700        710        720 
NARTFAGNTP LHLAAGLGSP TLTRLLLKAG ADIHAENEEP LCPLPSPPTS GSDSDSEGPE 

       730        740        750        760        770        780 
TDTQRNFRGH TPLDLTRSTK VKTLLLNAAQ NTTEPPLAPP SPAGPGLSLG DAALQNLEQL 

       790        800        810        820        830        840 
LDGPEAQGSW AELAERLGLR SLVDTYRKTP SPSGSLLRSY KLAGGDLVGL LEALSDMGLH 

       850        860        870        880        890 
EGVRLLKAPE TRDKLPSTEV KEDSAYGSQS VEQEAEKLCP PPEPPGGLCH GHPQPQVH

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References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Kidney EMBL AAH85800.1.
+Additional computationally mapped references.

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Cross-references

Sequence databases

BC085800 mRNA. Translation: AAH85800.1.
IPIIPI00196187.
RefSeqNP_001008350.1.
UniGeneRn.204814

3D structure databases

SMRQ5U2Z4. Positions 37-327, 771-865.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ5U2Z4.

Genome annotation databases

EnsemblENSRNOT00000026235; ENSRNOP00000026235; ENSRNOG00000019311; Rattus norvegicus. [Genome view]
GeneID309452.
KEGGrno:309452.
NMPDRfig|10116.3.peg.4205.
UCSCNM_001008349. rat.

Organism-specific databases

CTD309452.
RGD1307189. Nfkb2.

Phylogenomic databases

HOVERGENQ5U2Z4.
OMAQTSVVSF.

Gene expression databases

ArrayExpressQ5U2Z4.
GenevestigatorQ5U2Z4.

Family and domain databases

InterProIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR000488. Death.
IPR011029. DEATH-like.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002909. IPT_TIG_rcpt.
IPR015682. NF-kappaB_related2.
IPR000451. NF_Rel_dor.
IPR008967. p53-like_TF_DNA-bd.
IPR011539. RHD.
[Graphical view]
Gene3DG3DSA:1.25.40.20. ANK. 1 hit.
G3DSA:1.10.533.10. DEATH_like. 1 hit.
G3DSA:2.60.40.10. Ig-like_fold. 1 hit.
G3DSA:2.60.40.340. RHD. 1 hit.
PANTHERPTHR18958:SF244. NF_kB_related2. 1 hit.
PfamPF00023. Ank. 6 hits.
PF00531. Death. 1 hit.
PF00554. RHD. 1 hit.
PF01833. TIG. 1 hit.
[Graphical view]
PRINTSPR00057. NFKBTNSCPFCT.
SMARTSM00248. ANK. 6 hits.
SM00005. DEATH. 1 hit.
SM00429. IPT. 1 hit.
[Graphical view]
PROSITEPS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 5 hits.
PS01204. REL_1. 1 hit.
PS50254. REL_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio660810.

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Entry information

Entry nameQ5U2Z4_RAT
AccessionPrimary (citable) accession number: Q5U2Z4
Entry history
Integrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: November 3, 2009
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information