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Protein
Submitted name:

GATA-binding protein 5

Gene

Gata5

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-RNO-983231. Factors involved in megakaryocyte development and platelet production.

Names & Taxonomyi

Protein namesi
Submitted name:
GATA-binding protein 5Imported
Submitted name:
Similar to Transcription factor GATA-5 (GATA binding factor-5)Imported
Gene namesi
Name:Gata5Imported
Synonyms:LOC499951Imported
ORF Names:rCG_38545Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi1561365. Gata5.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000058983.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000007896.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini190 – 244GATA-typeInterPro annotationAdd BLAST55
Domaini244 – 297GATA-typeInterPro annotationAdd BLAST54

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1601. Eukaryota.
COG5641. LUCA.
GeneTreeiENSGT00760000119221.
HOGENOMiHOG000047700.
HOVERGENiHBG051703.
KOiK17896.
OMAiAFPFAHS.
OrthoDBiEOG091G0AUR.
TreeFamiTF315391.

Family and domain databases

Gene3Di3.30.50.10. 1 hit.
InterProiView protein in InterPro
IPR008013. GATA_N.
IPR016375. TF_GATA_4/5/6.
IPR000679. Znf_GATA.
IPR013088. Znf_NHR/GATA.
PfamiView protein in Pfam
PF00320. GATA. 2 hits.
PF05349. GATA-N. 1 hit.
PIRSFiPIRSF003028. TF_GATA_4/5/6. 1 hit.
PRINTSiPR00619. GATAZNFINGER.
SMARTiView protein in SMART
SM00401. ZnF_GATA. 2 hits.
PROSITEiView protein in PROSITE
PS00344. GATA_ZN_FINGER_1. 2 hits.
PS50114. GATA_ZN_FINGER_2. 2 hits.

Sequencei

Sequence statusi: Complete.

Q5U2V0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYQSLALAQS PGQGTYADSG PFLHSSGAGS PVFVAPTRVP SMLPYLPSCE
60 70 80 90 100
PGSQPPALAA HSSWTQAVSA ESSAFGSGSP HPPATHPPGA TAFPFAHSPS
110 120 130 140 150
GSGSGGSAGV RDGAAFQSAL LAREQYPTAL GRPMSASYPT TYPAYVSPDV
160 170 180 190 200
APSWTSGPFD SSILHGLQGR PGGLPGRRTT FVPDFLEEFP GEGRECVNCG
210 220 230 240 250
ALSTPLWRRD GTGHYLCNAC GLYHKMNGVN RPLVRPQKRL SSSRRSGLCC
260 270 280 290 300
SNCHTATTTL WRRNAEGEPV CNACGLYMKL HGVPRPLAMK KESIQTRKRK
310 320 330 340 350
PKNPAKIKGS SGSTANSTAS SPTLLNTESS ATTLKAESSL ASPGCAGPTI
360 370 380 390 400
TSQASSPADE SLASSHLEFK FEPEDFVFTS SSLSPQAGLS GVLRQEAWCA

LALA
Length:404
Mass (Da):42,098
Last modified:December 7, 2004 - v1
Checksum:i3E235B571A59D8BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC115322 Genomic DNA. No translation available.
BC085855 mRNA. Translation: AAH85855.1.
CH474066 Genomic DNA. Translation: EDL88812.1.
RefSeqiNP_001019487.1. NM_001024316.1.
UniGeneiRn.27175.

Genome annotation databases

EnsembliENSRNOT00000089971; ENSRNOP00000073661; ENSRNOG00000058983.
GeneIDi499951.
KEGGirno:499951.

Similar proteinsi

Entry informationi

Entry nameiQ5U2V0_RAT
AccessioniPrimary (citable) accession number: Q5U2V0
Entry historyiIntegrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: November 22, 2017
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported