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Protein

Transcription initiation factor TFIID subunit 11

Gene

Taf11

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Core TAFII present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Enzyme and pathway databases

ReactomeiR-RNO-674695. RNA Polymerase II Pre-transcription Events.
R-RNO-73776. RNA Polymerase II Promoter Escape.
R-RNO-73779. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
R-RNO-75953. RNA Polymerase II Transcription Initiation.
R-RNO-76042. RNA Polymerase II Transcription Initiation And Promoter Clearance.

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription initiation factor TFIID subunit 11
Alternative name(s):
TFIID subunit p30-beta
Transcription initiation factor TFIID 28 kDa subunit
Short name:
TAF(II)28
Short name:
TAFII-28
Short name:
TAFII28
Gene namesi
Name:Taf11
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 20

Organism-specific databases

RGDi1305626. Taf11.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 211211Transcription initiation factor TFIID subunit 11PRO_0000118905Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionineBy similarity

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ5U1X0.

Expressioni

Gene expression databases

GenevisibleiQ5U1X0. RN.

Interactioni

Subunit structurei

TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs).By similarity

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000033634.

Structurei

3D structure databases

ProteinModelPortaliQ5U1X0.
SMRiQ5U1X0. Positions 113-201.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domaini

TBP and TAFII18 bind to distinct domains of TAFII28.By similarity

Sequence similaritiesi

Belongs to the TAF11 family.Curated

Phylogenomic databases

eggNOGiKOG3219. Eukaryota.
COG5251. LUCA.
GeneTreeiENSGT00390000013228.
HOGENOMiHOG000006355.
HOVERGENiHBG079228.
InParanoidiQ5U1X0.
KOiK03135.
OMAiMDDAHES.
OrthoDBiEOG7VDXQT.
PhylomeDBiQ5U1X0.
TreeFamiTF315132.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR006809. TAFII28.
[Graphical view]
PANTHERiPTHR13218. PTHR13218. 1 hit.
PfamiPF04719. TAFII28. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5U1X0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDNLGESPTD KAGEPGESEE TRATPGAPVS ADTEGIPEET DQVGDADSKE
60 70 80 90 100
AAAEESELKS QDVSDVTAAE REDPSLLTPA AKKLKLDTKD KKEKKQKVDE
110 120 130 140 150
DEIQKMQILV SSFSEEQLNR YEMYRRSAFP KAAIKRLIQS ITGTSVSQNV
160 170 180 190 200
VIAMSGISKV FVGEVVEEAL DVCEKWGEMP PLQPKHMREA VRRLKSKGQI
210
PNSKHKKITF F
Length:211
Mass (Da):23,306
Last modified:December 7, 2004 - v1
Checksum:i31D50FE6FBD67BF2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC086421 mRNA. Translation: AAH86421.1.
RefSeqiNP_001008351.1. NM_001008350.1.
XP_006256253.1. XM_006256191.2.
XP_006256254.1. XM_006256192.2.
XP_008771034.1. XM_008772812.1.
UniGeneiRn.11920.

Genome annotation databases

EnsembliENSRNOT00000038195; ENSRNOP00000033634; ENSRNOG00000024601.
GeneIDi309638.
KEGGirno:309638.
UCSCiRGD:1305626. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC086421 mRNA. Translation: AAH86421.1.
RefSeqiNP_001008351.1. NM_001008350.1.
XP_006256253.1. XM_006256191.2.
XP_006256254.1. XM_006256192.2.
XP_008771034.1. XM_008772812.1.
UniGeneiRn.11920.

3D structure databases

ProteinModelPortaliQ5U1X0.
SMRiQ5U1X0. Positions 113-201.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000033634.

Proteomic databases

PaxDbiQ5U1X0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000038195; ENSRNOP00000033634; ENSRNOG00000024601.
GeneIDi309638.
KEGGirno:309638.
UCSCiRGD:1305626. rat.

Organism-specific databases

CTDi6882.
RGDi1305626. Taf11.

Phylogenomic databases

eggNOGiKOG3219. Eukaryota.
COG5251. LUCA.
GeneTreeiENSGT00390000013228.
HOGENOMiHOG000006355.
HOVERGENiHBG079228.
InParanoidiQ5U1X0.
KOiK03135.
OMAiMDDAHES.
OrthoDBiEOG7VDXQT.
PhylomeDBiQ5U1X0.
TreeFamiTF315132.

Enzyme and pathway databases

ReactomeiR-RNO-674695. RNA Polymerase II Pre-transcription Events.
R-RNO-73776. RNA Polymerase II Promoter Escape.
R-RNO-73779. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
R-RNO-75953. RNA Polymerase II Transcription Initiation.
R-RNO-76042. RNA Polymerase II Transcription Initiation And Promoter Clearance.

Miscellaneous databases

NextBioi661097.
PROiQ5U1X0.

Gene expression databases

GenevisibleiQ5U1X0. RN.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR006809. TAFII28.
[Graphical view]
PANTHERiPTHR13218. PTHR13218. 1 hit.
PfamiPF04719. TAFII28. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Ovary.
  2. "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues."
    Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A., Lundby C., Olsen J.V.
    Nat. Commun. 3:876-876(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiTAF11_RAT
AccessioniPrimary (citable) accession number: Q5U1X0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 12, 2005
Last sequence update: December 7, 2004
Last modified: May 11, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.