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Protein

Transcription initiation factor TFIID subunit 11

Gene

Taf11

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Core TAFII present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription initiation factor TFIID subunit 11
Alternative name(s):
TFIID subunit p30-beta
Transcription initiation factor TFIID 28 kDa subunit
Short name:
TAF(II)28
Short name:
TAFII-28
Short name:
TAFII28
Gene namesi
Name:Taf11
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 20

Organism-specific databases

RGDi1305626 Taf11

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001189051 – 211Transcription initiation factor TFIID subunit 11Add BLAST211

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei1N-acetylmethionineBy similarity1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ5U1X0
PRIDEiQ5U1X0

Expressioni

Gene expression databases

BgeeiENSRNOG00000024601
GenevisibleiQ5U1X0 RN

Interactioni

Subunit structurei

TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs).By similarity

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000033634

Structurei

3D structure databases

ProteinModelPortaliQ5U1X0
SMRiQ5U1X0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domaini

TBP and TAFII18 bind to distinct domains of TAFII28.By similarity

Sequence similaritiesi

Belongs to the TAF11 family.Curated

Phylogenomic databases

eggNOGiKOG3219 Eukaryota
COG5251 LUCA
GeneTreeiENSGT00390000013228
HOGENOMiHOG000006355
HOVERGENiHBG079228
InParanoidiQ5U1X0
KOiK03135
OMAiMDDAHES
OrthoDBiEOG091G0Y7H
PhylomeDBiQ5U1X0
TreeFamiTF315132

Family and domain databases

CDDicd08048 TAF11, 1 hit
Gene3Di1.10.20.10, 1 hit
InterProiView protein in InterPro
IPR009072 Histone-fold
IPR006809 TAFII28
PANTHERiPTHR13218 PTHR13218, 1 hit
PfamiView protein in Pfam
PF04719 TAFII28, 1 hit
SUPFAMiSSF47113 SSF47113, 1 hit

Sequencei

Sequence statusi: Complete.

Q5U1X0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDNLGESPTD KAGEPGESEE TRATPGAPVS ADTEGIPEET DQVGDADSKE
60 70 80 90 100
AAAEESELKS QDVSDVTAAE REDPSLLTPA AKKLKLDTKD KKEKKQKVDE
110 120 130 140 150
DEIQKMQILV SSFSEEQLNR YEMYRRSAFP KAAIKRLIQS ITGTSVSQNV
160 170 180 190 200
VIAMSGISKV FVGEVVEEAL DVCEKWGEMP PLQPKHMREA VRRLKSKGQI
210
PNSKHKKITF F
Length:211
Mass (Da):23,306
Last modified:December 7, 2004 - v1
Checksum:i31D50FE6FBD67BF2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC086421 mRNA Translation: AAH86421.1
RefSeqiNP_001008351.1, NM_001008350.1
XP_006256253.1, XM_006256191.3
XP_006256254.1, XM_006256192.3
XP_008771034.1, XM_008772812.2
UniGeneiRn.11920

Genome annotation databases

EnsembliENSRNOT00000038195; ENSRNOP00000033634; ENSRNOG00000024601
GeneIDi309638
KEGGirno:309638
UCSCiRGD:1305626 rat

Similar proteinsi

Entry informationi

Entry nameiTAF11_RAT
AccessioniPrimary (citable) accession number: Q5U1X0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 12, 2005
Last sequence update: December 7, 2004
Last modified: March 28, 2018
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health