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Q5U1W5

- U1SBP_RAT

UniProt

Q5U1W5 - U1SBP_RAT

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Protein

U11/U12 small nuclear ribonucleoprotein 35 kDa protein

Gene
Snrnp35, U1snrnpbp
Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. RNA binding Source: UniProtKB-KW

GO - Biological processi

  1. mRNA processing Source: UniProtKB-KW
  2. RNA splicing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

mRNA processing, mRNA splicing

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
U11/U12 small nuclear ribonucleoprotein 35 kDa protein
Short name:
U11/U12 snRNP 35 kDa protein
Alternative name(s):
U1 snRNP-binding protein homolog
Gene namesi
Name:Snrnp35
Synonyms:U1snrnpbp
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Unplaced

Organism-specific databases

RGDi1310724. Snrnp35.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. spliceosomal complex Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Nucleus, Spliceosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 244244U11/U12 small nuclear ribonucleoprotein 35 kDa proteinPRO_0000307909Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriQ5U1W5.

Interactioni

Subunit structurei

Component of the U11/U12 snRNPs that are part of the U12-type spliceosome By similarity.

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000001402.

Structurei

3D structure databases

ProteinModelPortaliQ5U1W5.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini51 – 12979RRMAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi154 – 24289Arg-richAdd
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0724.
HOGENOMiHOG000006374.
HOVERGENiHBG104583.
InParanoidiQ5U1W5.
KOiK13155.
PhylomeDBiQ5U1W5.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5U1W5-1 [UniParc]FASTAAdd to Basket

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MSDWMPIAKE YDPLKAGSID GTDEDPHDRA VWRAMLARYV PNKGVTGDPL    50
LTLFVARLNS QTKEEKLKEV FSRYGDIRRL RLVRDLVTGF SKGYAFIEYK 100
EERALLKAYR DADGLVIDQH EIFVDYELER TLRGWIPRRL GGGLGGKKES 150
GQLRFGGRDR PFRKPINLPV VKNEPHREGK RERRERSRSR DRHWDPRPRE 200
RDHDRGREKH WQDRARVWPE NDWEREREFR DERAKTRDKR DRSK 244
Length:244
Mass (Da):29,204
Last modified:December 7, 2004 - v1
Checksum:i07B008D0AF05575B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC086435 mRNA. Translation: AAH86435.1.
RefSeqiNP_001014149.1. NM_001014127.1.
UniGeneiRn.79076.

Genome annotation databases

GeneIDi360803.
KEGGirno:360803.
UCSCiRGD:1310724. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC086435 mRNA. Translation: AAH86435.1 .
RefSeqi NP_001014149.1. NM_001014127.1.
UniGenei Rn.79076.

3D structure databases

ProteinModelPortali Q5U1W5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000001402.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 360803.
KEGGi rno:360803.
UCSCi RGD:1310724. rat.

Organism-specific databases

CTDi 11066.
RGDi 1310724. Snrnp35.

Phylogenomic databases

eggNOGi COG0724.
HOGENOMi HOG000006374.
HOVERGENi HBG104583.
InParanoidi Q5U1W5.
KOi K13155.
PhylomeDBi Q5U1W5.

Miscellaneous databases

NextBioi 674154.
PROi Q5U1W5.

Gene expression databases

Genevestigatori Q5U1W5.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view ]
Pfami PF00076. RRM_1. 1 hit.
[Graphical view ]
SMARTi SM00360. RRM. 1 hit.
[Graphical view ]
PROSITEi PS50102. RRM. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Ovary.

Entry informationi

Entry nameiU1SBP_RAT
AccessioniPrimary (citable) accession number: Q5U1W5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: December 7, 2004
Last modified: April 16, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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