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Q5U1W5 (U1SBP_RAT) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
U11/U12 small nuclear ribonucleoprotein 35 kDa protein

Short name=U11/U12 snRNP 35 kDa protein
Alternative name(s):
U1 snRNP-binding protein homolog
Gene names
Name:Snrnp35
Synonyms:U1snrnpbp
OrganismRattus norvegicus (Rat) [Reference proteome]
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length244 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subunit structure

Component of the U11/U12 snRNPs that are part of the U12-type spliceosome By similarity.

Subcellular location

Nucleus By similarity.

Sequence similarities

Contains 1 RRM (RNA recognition motif) domain.

Ontologies

Keywords
   Biological processmRNA processing
mRNA splicing
   Cellular componentNucleus
Spliceosome
   LigandRNA-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processRNA splicing

Inferred from electronic annotation. Source: UniProtKB-KW

mRNA processing

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentspliceosomal complex

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

nucleotide binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 244244U11/U12 small nuclear ribonucleoprotein 35 kDa protein
PRO_0000307909

Regions

Domain51 – 12979RRM
Compositional bias154 – 24289Arg-rich

Sequences

Sequence LengthMass (Da)Tools
Q5U1W5 [UniParc].

Last modified December 7, 2004. Version 1.
Checksum: 07B008D0AF05575B

FASTA24429,204
        10         20         30         40         50         60 
MSDWMPIAKE YDPLKAGSID GTDEDPHDRA VWRAMLARYV PNKGVTGDPL LTLFVARLNS 

        70         80         90        100        110        120 
QTKEEKLKEV FSRYGDIRRL RLVRDLVTGF SKGYAFIEYK EERALLKAYR DADGLVIDQH 

       130        140        150        160        170        180 
EIFVDYELER TLRGWIPRRL GGGLGGKKES GQLRFGGRDR PFRKPINLPV VKNEPHREGK 

       190        200        210        220        230        240 
RERRERSRSR DRHWDPRPRE RDHDRGREKH WQDRARVWPE NDWEREREFR DERAKTRDKR 


DRSK 

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Ovary.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC086435 mRNA. Translation: AAH86435.1.
RefSeqNP_001014149.1. NM_001014127.1.
UniGeneRn.79076.

3D structure databases

ProteinModelPortalQ5U1W5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000001402.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID360803.
KEGGrno:360803.
UCSCRGD:1310724. rat.

Organism-specific databases

CTD11066.
RGD1310724. Snrnp35.

Phylogenomic databases

eggNOGCOG0724.
HOGENOMHOG000006374.
HOVERGENHBG104583.
InParanoidQ5U1W5.
KOK13155.
PhylomeDBQ5U1W5.

Gene expression databases

GenevestigatorQ5U1W5.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTSM00360. RRM. 1 hit.
[Graphical view]
PROSITEPS50102. RRM. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio674154.
PROQ5U1W5.

Entry information

Entry nameU1SBP_RAT
AccessionPrimary (citable) accession number: Q5U1W5
Entry history
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: December 7, 2004
Last modified: April 16, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families