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Q5U1W4 (LAP4B_RAT) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Lysosomal-associated transmembrane protein 4B
Gene names
Name:Laptm4b
OrganismRattus norvegicus (Rat) [Reference proteome]
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length227 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Endomembrane system; Multi-pass membrane protein By similarity.

Sequence similarities

Belongs to the LAPTM4/LAPTM5 transporter family.

Ontologies

Keywords
   Biological processTransport
   Cellular componentMembrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtransport

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentendomembrane system

Inferred from electronic annotation. Source: UniProtKB-SubCell

integral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 227227Lysosomal-associated transmembrane protein 4B
PRO_0000249724

Regions

Transmembrane26 – 4621Helical; Potential
Transmembrane72 – 9221Helical; Potential
Transmembrane100 – 12021Helical; Potential
Transmembrane153 – 17321Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
Q5U1W4 [UniParc].

Last modified December 7, 2004. Version 1.
Checksum: 502B649C22D1C421

FASTA22725,404
        10         20         30         40         50         60 
MKMVAPWTRF YSHSCCLCCH VRTGTILLGI WYLIINAVVL LILLSALADP DQYHFSGSEL 

        70         80         90        100        110        120 
GGEFEFMDDA NMCIAIAISL LMILICAMAT YGAYKQHAAW IIPFFCYQIF DFALNTLVAI 

       130        140        150        160        170        180 
TVLVYPNSIQ EYIRQLPPSF PYRDDIMSVN PTCLVLVILL FIGIILTFKG YLISCVWSCY 

       190        200        210        220 
RYINGRNSSD VLVYVTSNDT TVLLPPYDDA TAVTGTAKEP PPPYVSA

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Ovary.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC086442 mRNA. Translation: AAH86442.1.
IPIIPI00360887.
RefSeqNP_001013192.1. NM_001013174.1.
UniGeneRn.8123.

3D structure databases

ModBaseSearch...

Proteomic databases

PaxDbQ5U1W4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000008969; ENSRNOP00000008969; ENSRNOG00000006766.
GeneID315047.
KEGGrno:315047.
UCSCRGD:1311853. rat.

Organism-specific databases

CTD55353.
RGD1311853. Laptm4b.

Phylogenomic databases

eggNOGNOG46169.
GeneTreeENSGT00390000013359.
HOGENOMHOG000007698.
HOVERGENHBG000908.
InParanoidQ5U1W4.
KOK12387.
OMAKTCARAR.
OrthoDBEOG47WNPC.

Gene expression databases

GenevestigatorQ5U1W4.
GermOnlineENSRNOG00000006766. Rattus norvegicus.

Family and domain databases

InterProIPR004687. LAPTM4/5.
IPR018401. Lysosomal-assoc_TM_prot4B.
[Graphical view]
PANTHERPTHR12479. PTHR12479. 1 hit.
PTHR12479:SF6. PTHR12479:SF6. 1 hit.
PfamPF03821. Mtp. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio668544.

Entry information

Entry nameLAP4B_RAT
AccessionPrimary (citable) accession number: Q5U1W4
Entry history
Integrated into UniProtKB/Swiss-Prot: September 19, 2006
Last sequence update: December 7, 2004
Last modified: April 3, 2013
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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