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Q5U156 (Q5U156_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1281 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q5U156 [UniParc].

Last modified October 3, 2006. Version 1.
Checksum: 1FEDB4CD75C0FA36

FASTA1,281143,681
        10         20         30         40         50         60 
MTRVTRSEIS LDMEFWVEEL SPAQLAYYEK ITNEHNAVKG ALKNAVSANE GKELFNGQVF 

        70         80         90        100        110        120 
QAYSFKGKVL QELKEATLPK KPPKPTDSPS TPAAQSGGTG RGRGRPPRQP SNIAYLESSD 

       130        140        150        160        170        180 
EGDDDMPLAK RLALSAGKKA VAVANASSSF TPKSSKKAAS AASGGSSSPV PKSSGKLFKE 

       190        200        210        220        230        240 
SKPDIESPPK NYRPAEVNSV GGLVVGSTDE SKDSKDGKDG KDNKMQGKTY PSLVVLAKPF 

       250        260        270        280        290        300 
LKIKDMAATR SKLDSKVKLV LMLTPNKFCE WLLQEGLLRA QQHCINHRNN ELKLGIYSDV 

       310        320        330        340        350        360 
TKFPYTGGYV WISECCPYRF VSVFNNSIFE GAQHPPTFLL KLIYHWACQT SIQNVVQWVK 

       370        380        390        400        410        420 
VDSVYIKGIY TWLRAICTLA VHQKCKKLGG PGKFVEVGVI SLGTTSQDGS QRQVKVEVLG 

       430        440        450        460        470        480 
VYDYAEKSIR LRAVEPITDG DRNYKKRFQA ILEPLSRWVH KDSTICIDLT VDKITLFSMG 

       490        500        510        520        530        540 
FKNIVQAAAT DNTAKHNNSA VMEYLRRIVP RMFQNTLSLL SRQMIQQFLD ELVWRESFGT 

       550        560        570        580        590        600 
YALQAFNNII IHIAEQTRVT TNETITQRLY QVATNPFKDW SILPANYKET PANAAPKRLK 

       610        620        630        640        650        660 
KPINDADYVV SNKIPKKEKD RDIASSGVKR GRPPNALGTP PPQLPIKKGP GRPPGSTNQT 

       670        680        690        700        710        720 
KGDRATTSSS KSLSKSLIAK GLGKKPKEKD EKIPMVIKKE EDDLRGLEEL YYGISDGTDE 

       730        740        750        760        770        780 
YHEIFPYSTP RTVHNELAKT VECPICLNGD SFDSNEKLQT HLVSHISPEG KQHQFQCLFC 

       790        800        810        820        830        840 
LEKHPTESVL AKHNQIMHPT ETKTEGSPSY YCLICQQRHN SLHLLTAHLQ KVHSTLELPY 

       850        860        870        880        890        900 
WCHSCGYRSS SHRDLVRHFY DDHKHQNFLQ CPYCLDIFYF SKLGVVNQLR IEHYFMHLDE 

       910        920        930        940        950        960 
HINKRDPSLR CQKCSLSFLE KGDLKQHAVQ HHVSMTKTNR PVRLLLNNSM LIPPPKIRTH 

       970        980        990       1000       1010       1020 
HREQPPFSTY KRPVFFAFLE GKTCAECNTD FASEETHYTG WLHCVKCNYQ TCCERAQFRH 

      1030       1040       1050       1060       1070       1080 
GVECNGNFVD AMEVNMPQEM HCICGFATGN GNKMAQHLAN CGLSTCYPSL EAASENAVKR 

      1090       1100       1110       1120       1130       1140 
NMLDMLGLVR RDGETSGEGA DISETADDVA DQSSDMLPPQ EDHHLQQHHQ QVGHQQQMQG 

      1150       1160       1170       1180       1190       1200 
QPNEPQAELQ QEYLSAPVEH EPVQNMPVHQ SMPVQQTGPI QFGEMEAAPV LLDTQQQVQP 

      1210       1220       1230       1240       1250       1260 
TPDYAQVSVV QQHQQQQPYG LSNYGQSSLA TDIDMPLIGE LSEPNAPPTP QFLGEVHTPM 

      1270       1280 
FDAVAAAEQQ HYHAQHHHHP Q 

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence."
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., Pacleb J.M., Park S. expand/collapse author list , Pfeiffer B.D., Richards S., Sodergren E.J., Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[3]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: Berkeley.
[4]"The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[5]"Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[6]Stapleton M., Carlson J., Chavez C., Frise E., George R., Pacleb J., Park S., Wan K., Yu C., Rubin G.M., Celniker S.
Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley EMBL AAV36921.1.
[7]"Combined evidence annotation of transposable elements in genome sequences."
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[8]Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[9]"Drosophila melanogaster release 4 sequence."
Berkeley Drosophila Genome Project
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[10]"The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[11]"Sequence finishing and mapping of Drosophila melanogaster heterochromatin."
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., Dimitri P., Karpen G.H., Celniker S.E.
Science 316:1625-1628(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[12]FlyBase
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE013599 Genomic DNA. Translation: AAF58164.2.
BT016036 mRNA. Translation: AAV36921.1.
RefSeqNP_611019.2. NM_137175.3.
UniGeneDm.3651.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0087402; FBpp0086533; FBgn0033998.
GeneID36685.
KEGGdme:Dmel_CG8092.
UCSCCG8092-RA. d. melanogaster.

Organism-specific databases

CTD36685.
FlyBaseFBgn0033998. row.

Phylogenomic databases

eggNOGNOG239493.
GeneTreeENSGT00530000063300.
InParanoidQ5U156.
OrthoDBEOG7FR7H5.

Family and domain databases

InterProIPR017956. AT_hook_DNA-bd_motif.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
SMARTSM00384. AT_hook. 3 hits.
SM00355. ZnF_C2H2. 5 hits.
[Graphical view]
PROSITEPS50157. ZINC_FINGER_C2H2_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

GenomeRNAi36685.
NextBio799858.

Entry information

Entry nameQ5U156_DROME
AccessionPrimary (citable) accession number: Q5U156
Entry history
Integrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: June 11, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)