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Q5U156

- Q5U156_DROME

UniProt

Q5U156 - Q5U156_DROME

Protein
Submitted name:

RE01954p

Gene

row

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 78 (01 Oct 2014)
      Sequence version 1 (03 Oct 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: InterPro
    2. metal ion binding Source: InterPro
    3. protein binding Source: FlyBase

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: FlyBase
    2. regulation of transcription from RNA polymerase II promoter Source: FlyBase

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RE01954pImported
    Submitted name:
    Relative of woc, isoform AImported
    Gene namesi
    Name:rowImported
    ORF Names:CG8092Imported, Dmel_CG8092Imported
    OrganismiDrosophila melanogaster (Fruit fly)Imported
    Taxonomic identifieri7227 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
    ProteomesiUP000000803: Chromosome 2R

    Organism-specific databases

    FlyBaseiFBgn0033998. row.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: FlyBase
    2. protein complex Source: FlyBase

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG239493.
    GeneTreeiENSGT00530000063300.
    InParanoidiQ5U156.
    OrthoDBiEOG7FR7H5.

    Family and domain databases

    InterProiIPR017956. AT_hook_DNA-bd_motif.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    [Graphical view]
    SMARTiSM00384. AT_hook. 3 hits.
    SM00355. ZnF_C2H2. 5 hits.
    [Graphical view]
    PROSITEiPS50157. ZINC_FINGER_C2H2_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5U156-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTRVTRSEIS LDMEFWVEEL SPAQLAYYEK ITNEHNAVKG ALKNAVSANE     50
    GKELFNGQVF QAYSFKGKVL QELKEATLPK KPPKPTDSPS TPAAQSGGTG 100
    RGRGRPPRQP SNIAYLESSD EGDDDMPLAK RLALSAGKKA VAVANASSSF 150
    TPKSSKKAAS AASGGSSSPV PKSSGKLFKE SKPDIESPPK NYRPAEVNSV 200
    GGLVVGSTDE SKDSKDGKDG KDNKMQGKTY PSLVVLAKPF LKIKDMAATR 250
    SKLDSKVKLV LMLTPNKFCE WLLQEGLLRA QQHCINHRNN ELKLGIYSDV 300
    TKFPYTGGYV WISECCPYRF VSVFNNSIFE GAQHPPTFLL KLIYHWACQT 350
    SIQNVVQWVK VDSVYIKGIY TWLRAICTLA VHQKCKKLGG PGKFVEVGVI 400
    SLGTTSQDGS QRQVKVEVLG VYDYAEKSIR LRAVEPITDG DRNYKKRFQA 450
    ILEPLSRWVH KDSTICIDLT VDKITLFSMG FKNIVQAAAT DNTAKHNNSA 500
    VMEYLRRIVP RMFQNTLSLL SRQMIQQFLD ELVWRESFGT YALQAFNNII 550
    IHIAEQTRVT TNETITQRLY QVATNPFKDW SILPANYKET PANAAPKRLK 600
    KPINDADYVV SNKIPKKEKD RDIASSGVKR GRPPNALGTP PPQLPIKKGP 650
    GRPPGSTNQT KGDRATTSSS KSLSKSLIAK GLGKKPKEKD EKIPMVIKKE 700
    EDDLRGLEEL YYGISDGTDE YHEIFPYSTP RTVHNELAKT VECPICLNGD 750
    SFDSNEKLQT HLVSHISPEG KQHQFQCLFC LEKHPTESVL AKHNQIMHPT 800
    ETKTEGSPSY YCLICQQRHN SLHLLTAHLQ KVHSTLELPY WCHSCGYRSS 850
    SHRDLVRHFY DDHKHQNFLQ CPYCLDIFYF SKLGVVNQLR IEHYFMHLDE 900
    HINKRDPSLR CQKCSLSFLE KGDLKQHAVQ HHVSMTKTNR PVRLLLNNSM 950
    LIPPPKIRTH HREQPPFSTY KRPVFFAFLE GKTCAECNTD FASEETHYTG 1000
    WLHCVKCNYQ TCCERAQFRH GVECNGNFVD AMEVNMPQEM HCICGFATGN 1050
    GNKMAQHLAN CGLSTCYPSL EAASENAVKR NMLDMLGLVR RDGETSGEGA 1100
    DISETADDVA DQSSDMLPPQ EDHHLQQHHQ QVGHQQQMQG QPNEPQAELQ 1150
    QEYLSAPVEH EPVQNMPVHQ SMPVQQTGPI QFGEMEAAPV LLDTQQQVQP 1200
    TPDYAQVSVV QQHQQQQPYG LSNYGQSSLA TDIDMPLIGE LSEPNAPPTP 1250
    QFLGEVHTPM FDAVAAAEQQ HYHAQHHHHP Q 1281
    Length:1,281
    Mass (Da):143,681
    Last modified:October 3, 2006 - v1
    Checksum:i1FEDB4CD75C0FA36
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013599 Genomic DNA. Translation: AAF58164.2.
    BT016036 mRNA. Translation: AAV36921.1.
    RefSeqiNP_611019.2. NM_137175.3.
    UniGeneiDm.3651.

    Genome annotation databases

    EnsemblMetazoaiFBtr0087402; FBpp0086533; FBgn0033998.
    GeneIDi36685.
    KEGGidme:Dmel_CG8092.
    UCSCiCG8092-RA. d. melanogaster.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013599 Genomic DNA. Translation: AAF58164.2 .
    BT016036 mRNA. Translation: AAV36921.1 .
    RefSeqi NP_611019.2. NM_137175.3.
    UniGenei Dm.3651.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai FBtr0087402 ; FBpp0086533 ; FBgn0033998 .
    GeneIDi 36685.
    KEGGi dme:Dmel_CG8092.
    UCSCi CG8092-RA. d. melanogaster.

    Organism-specific databases

    CTDi 36685.
    FlyBasei FBgn0033998. row.

    Phylogenomic databases

    eggNOGi NOG239493.
    GeneTreei ENSGT00530000063300.
    InParanoidi Q5U156.
    OrthoDBi EOG7FR7H5.

    Miscellaneous databases

    GenomeRNAii 36685.
    NextBioi 799858.

    Family and domain databases

    InterProi IPR017956. AT_hook_DNA-bd_motif.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    [Graphical view ]
    SMARTi SM00384. AT_hook. 3 hits.
    SM00355. ZnF_C2H2. 5 hits.
    [Graphical view ]
    PROSITEi PS50157. ZINC_FINGER_C2H2_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of Drosophila melanogaster."
      Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
      , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
      Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    3. Cited for: GENOME REANNOTATION.
      Strain: BerkeleyImported.
    4. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
      Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
      Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    5. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
      Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
      Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    6. Stapleton M., Carlson J., Chavez C., Frise E., George R., Pacleb J., Park S., Wan K., Yu C., Rubin G.M., Celniker S.
      Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BerkeleyImported.
    7. "Combined evidence annotation of transposable elements in genome sequences."
      Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
      PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    8. Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
      Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    9. "Drosophila melanogaster release 4 sequence."
      Berkeley Drosophila Genome Project
      Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
      Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    10. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
      Smith C.D., Shu S., Mungall C.J., Karpen G.H.
      Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    11. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    12. FlyBase
      Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiQ5U156_DROME
    AccessioniPrimary (citable) accession number: Q5U156
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 3, 2006
    Last sequence update: October 3, 2006
    Last modified: October 1, 2014
    This is version 78 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3