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Q5U156

- Q5U156_DROME

UniProt

Q5U156 - Q5U156_DROME

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Protein
Submitted name:

RE01954p

Gene

row

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. metal ion binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: FlyBase
  2. regulation of transcription from RNA polymerase II promoter Source: FlyBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
RE01954pImported
Submitted name:
Relative of woc, isoform AImported
Gene namesi
Name:rowImported
ORF Names:CG8092Imported, Dmel_CG8092Imported
OrganismiDrosophila melanogaster (Fruit fly)Imported
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
ProteomesiUP000000803: Chromosome 2R

Organism-specific databases

FlyBaseiFBgn0033998. row.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: FlyBase
  2. protein complex Source: FlyBase
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG239493.
GeneTreeiENSGT00530000063300.
OrthoDBiEOG7FR7H5.

Family and domain databases

InterProiIPR017956. AT_hook_DNA-bd_motif.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
SMARTiSM00384. AT_hook. 3 hits.
SM00355. ZnF_C2H2. 5 hits.
[Graphical view]
PROSITEiPS50157. ZINC_FINGER_C2H2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5U156-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTRVTRSEIS LDMEFWVEEL SPAQLAYYEK ITNEHNAVKG ALKNAVSANE
60 70 80 90 100
GKELFNGQVF QAYSFKGKVL QELKEATLPK KPPKPTDSPS TPAAQSGGTG
110 120 130 140 150
RGRGRPPRQP SNIAYLESSD EGDDDMPLAK RLALSAGKKA VAVANASSSF
160 170 180 190 200
TPKSSKKAAS AASGGSSSPV PKSSGKLFKE SKPDIESPPK NYRPAEVNSV
210 220 230 240 250
GGLVVGSTDE SKDSKDGKDG KDNKMQGKTY PSLVVLAKPF LKIKDMAATR
260 270 280 290 300
SKLDSKVKLV LMLTPNKFCE WLLQEGLLRA QQHCINHRNN ELKLGIYSDV
310 320 330 340 350
TKFPYTGGYV WISECCPYRF VSVFNNSIFE GAQHPPTFLL KLIYHWACQT
360 370 380 390 400
SIQNVVQWVK VDSVYIKGIY TWLRAICTLA VHQKCKKLGG PGKFVEVGVI
410 420 430 440 450
SLGTTSQDGS QRQVKVEVLG VYDYAEKSIR LRAVEPITDG DRNYKKRFQA
460 470 480 490 500
ILEPLSRWVH KDSTICIDLT VDKITLFSMG FKNIVQAAAT DNTAKHNNSA
510 520 530 540 550
VMEYLRRIVP RMFQNTLSLL SRQMIQQFLD ELVWRESFGT YALQAFNNII
560 570 580 590 600
IHIAEQTRVT TNETITQRLY QVATNPFKDW SILPANYKET PANAAPKRLK
610 620 630 640 650
KPINDADYVV SNKIPKKEKD RDIASSGVKR GRPPNALGTP PPQLPIKKGP
660 670 680 690 700
GRPPGSTNQT KGDRATTSSS KSLSKSLIAK GLGKKPKEKD EKIPMVIKKE
710 720 730 740 750
EDDLRGLEEL YYGISDGTDE YHEIFPYSTP RTVHNELAKT VECPICLNGD
760 770 780 790 800
SFDSNEKLQT HLVSHISPEG KQHQFQCLFC LEKHPTESVL AKHNQIMHPT
810 820 830 840 850
ETKTEGSPSY YCLICQQRHN SLHLLTAHLQ KVHSTLELPY WCHSCGYRSS
860 870 880 890 900
SHRDLVRHFY DDHKHQNFLQ CPYCLDIFYF SKLGVVNQLR IEHYFMHLDE
910 920 930 940 950
HINKRDPSLR CQKCSLSFLE KGDLKQHAVQ HHVSMTKTNR PVRLLLNNSM
960 970 980 990 1000
LIPPPKIRTH HREQPPFSTY KRPVFFAFLE GKTCAECNTD FASEETHYTG
1010 1020 1030 1040 1050
WLHCVKCNYQ TCCERAQFRH GVECNGNFVD AMEVNMPQEM HCICGFATGN
1060 1070 1080 1090 1100
GNKMAQHLAN CGLSTCYPSL EAASENAVKR NMLDMLGLVR RDGETSGEGA
1110 1120 1130 1140 1150
DISETADDVA DQSSDMLPPQ EDHHLQQHHQ QVGHQQQMQG QPNEPQAELQ
1160 1170 1180 1190 1200
QEYLSAPVEH EPVQNMPVHQ SMPVQQTGPI QFGEMEAAPV LLDTQQQVQP
1210 1220 1230 1240 1250
TPDYAQVSVV QQHQQQQPYG LSNYGQSSLA TDIDMPLIGE LSEPNAPPTP
1260 1270 1280
QFLGEVHTPM FDAVAAAEQQ HYHAQHHHHP Q
Length:1,281
Mass (Da):143,681
Last modified:October 3, 2006 - v1
Checksum:i1FEDB4CD75C0FA36
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013599 Genomic DNA. Translation: AAF58164.2.
BT016036 mRNA. Translation: AAV36921.1.
RefSeqiNP_611019.2. NM_137175.4.
UniGeneiDm.3651.

Genome annotation databases

EnsemblMetazoaiFBtr0087402; FBpp0086533; FBgn0033998.
GeneIDi36685.
KEGGidme:Dmel_CG8092.
UCSCiCG8092-RA. d. melanogaster.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013599 Genomic DNA. Translation: AAF58164.2 .
BT016036 mRNA. Translation: AAV36921.1 .
RefSeqi NP_611019.2. NM_137175.4.
UniGenei Dm.3651.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai FBtr0087402 ; FBpp0086533 ; FBgn0033998 .
GeneIDi 36685.
KEGGi dme:Dmel_CG8092.
UCSCi CG8092-RA. d. melanogaster.

Organism-specific databases

CTDi 36685.
FlyBasei FBgn0033998. row.

Phylogenomic databases

eggNOGi NOG239493.
GeneTreei ENSGT00530000063300.
OrthoDBi EOG7FR7H5.

Miscellaneous databases

GenomeRNAii 36685.
NextBioi 799858.

Family and domain databases

InterProi IPR017956. AT_hook_DNA-bd_motif.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view ]
SMARTi SM00384. AT_hook. 3 hits.
SM00355. ZnF_C2H2. 5 hits.
[Graphical view ]
PROSITEi PS50157. ZINC_FINGER_C2H2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence of Drosophila melanogaster."
    Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
    , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
    Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  3. Cited for: GENOME REANNOTATION.
    Strain: BerkeleyImported.
  4. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
    Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
    Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  5. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
    Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
    Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  6. Stapleton M., Carlson J., Chavez C., Frise E., George R., Pacleb J., Park S., Wan K., Yu C., Rubin G.M., Celniker S.
    Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BerkeleyImported.
  7. "Combined evidence annotation of transposable elements in genome sequences."
    Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
    PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  8. Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. "Drosophila melanogaster release 4 sequence."
    Berkeley Drosophila Genome Project
    Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  10. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
    Smith C.D., Shu S., Mungall C.J., Karpen G.H.
    Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  11. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  12. FlyBase
    Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ5U156_DROME
AccessioniPrimary (citable) accession number: Q5U156
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: October 29, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3