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Q5U156

- Q5U156_DROME

UniProt

Q5U156 - Q5U156_DROME

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Protein
Submitted name: RE01954p
Gene
row, CG8092, Dmel_CG8092
Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. metal ion binding Source: InterPro
  3. protein binding Source: FlyBase

GO - Biological processi

  1. regulation of transcription from RNA polymerase II promoter Source: FlyBase
  2. regulation of transcription, DNA-templated Source: FlyBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
RE01954pImported
Submitted name:
Relative of woc, isoform AImported
Gene namesi
Name:rowImported
ORF Names:CG8092Imported, Dmel_CG8092Imported
OrganismiDrosophila melanogaster (Fruit fly)Imported
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
ProteomesiUP000000803: Chromosome 2R

Organism-specific databases

FlyBaseiFBgn0033998. row.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: FlyBase
  2. protein complex Source: FlyBase
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG239493.
GeneTreeiENSGT00530000063300.
InParanoidiQ5U156.
OrthoDBiEOG7FR7H5.

Family and domain databases

InterProiIPR017956. AT_hook_DNA-bd_motif.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
SMARTiSM00384. AT_hook. 3 hits.
SM00355. ZnF_C2H2. 5 hits.
[Graphical view]
PROSITEiPS50157. ZINC_FINGER_C2H2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5U156-1 [UniParc]FASTAAdd to Basket

« Hide

MTRVTRSEIS LDMEFWVEEL SPAQLAYYEK ITNEHNAVKG ALKNAVSANE     50
GKELFNGQVF QAYSFKGKVL QELKEATLPK KPPKPTDSPS TPAAQSGGTG 100
RGRGRPPRQP SNIAYLESSD EGDDDMPLAK RLALSAGKKA VAVANASSSF 150
TPKSSKKAAS AASGGSSSPV PKSSGKLFKE SKPDIESPPK NYRPAEVNSV 200
GGLVVGSTDE SKDSKDGKDG KDNKMQGKTY PSLVVLAKPF LKIKDMAATR 250
SKLDSKVKLV LMLTPNKFCE WLLQEGLLRA QQHCINHRNN ELKLGIYSDV 300
TKFPYTGGYV WISECCPYRF VSVFNNSIFE GAQHPPTFLL KLIYHWACQT 350
SIQNVVQWVK VDSVYIKGIY TWLRAICTLA VHQKCKKLGG PGKFVEVGVI 400
SLGTTSQDGS QRQVKVEVLG VYDYAEKSIR LRAVEPITDG DRNYKKRFQA 450
ILEPLSRWVH KDSTICIDLT VDKITLFSMG FKNIVQAAAT DNTAKHNNSA 500
VMEYLRRIVP RMFQNTLSLL SRQMIQQFLD ELVWRESFGT YALQAFNNII 550
IHIAEQTRVT TNETITQRLY QVATNPFKDW SILPANYKET PANAAPKRLK 600
KPINDADYVV SNKIPKKEKD RDIASSGVKR GRPPNALGTP PPQLPIKKGP 650
GRPPGSTNQT KGDRATTSSS KSLSKSLIAK GLGKKPKEKD EKIPMVIKKE 700
EDDLRGLEEL YYGISDGTDE YHEIFPYSTP RTVHNELAKT VECPICLNGD 750
SFDSNEKLQT HLVSHISPEG KQHQFQCLFC LEKHPTESVL AKHNQIMHPT 800
ETKTEGSPSY YCLICQQRHN SLHLLTAHLQ KVHSTLELPY WCHSCGYRSS 850
SHRDLVRHFY DDHKHQNFLQ CPYCLDIFYF SKLGVVNQLR IEHYFMHLDE 900
HINKRDPSLR CQKCSLSFLE KGDLKQHAVQ HHVSMTKTNR PVRLLLNNSM 950
LIPPPKIRTH HREQPPFSTY KRPVFFAFLE GKTCAECNTD FASEETHYTG 1000
WLHCVKCNYQ TCCERAQFRH GVECNGNFVD AMEVNMPQEM HCICGFATGN 1050
GNKMAQHLAN CGLSTCYPSL EAASENAVKR NMLDMLGLVR RDGETSGEGA 1100
DISETADDVA DQSSDMLPPQ EDHHLQQHHQ QVGHQQQMQG QPNEPQAELQ 1150
QEYLSAPVEH EPVQNMPVHQ SMPVQQTGPI QFGEMEAAPV LLDTQQQVQP 1200
TPDYAQVSVV QQHQQQQPYG LSNYGQSSLA TDIDMPLIGE LSEPNAPPTP 1250
QFLGEVHTPM FDAVAAAEQQ HYHAQHHHHP Q 1281
Length:1,281
Mass (Da):143,681
Last modified:October 3, 2006 - v1
Checksum:i1FEDB4CD75C0FA36
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE013599 Genomic DNA. Translation: AAF58164.2.
BT016036 mRNA. Translation: AAV36921.1.
RefSeqiNP_611019.2. NM_137175.3.
UniGeneiDm.3651.

Genome annotation databases

EnsemblMetazoaiFBtr0087402; FBpp0086533; FBgn0033998.
GeneIDi36685.
KEGGidme:Dmel_CG8092.
UCSCiCG8092-RA. d. melanogaster.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE013599 Genomic DNA. Translation: AAF58164.2 .
BT016036 mRNA. Translation: AAV36921.1 .
RefSeqi NP_611019.2. NM_137175.3.
UniGenei Dm.3651.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai FBtr0087402 ; FBpp0086533 ; FBgn0033998 .
GeneIDi 36685.
KEGGi dme:Dmel_CG8092.
UCSCi CG8092-RA. d. melanogaster.

Organism-specific databases

CTDi 36685.
FlyBasei FBgn0033998. row.

Phylogenomic databases

eggNOGi NOG239493.
GeneTreei ENSGT00530000063300.
InParanoidi Q5U156.
OrthoDBi EOG7FR7H5.

Miscellaneous databases

GenomeRNAii 36685.
NextBioi 799858.

Family and domain databases

InterProi IPR017956. AT_hook_DNA-bd_motif.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view ]
SMARTi SM00384. AT_hook. 3 hits.
SM00355. ZnF_C2H2. 5 hits.
[Graphical view ]
PROSITEi PS50157. ZINC_FINGER_C2H2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence of Drosophila melanogaster."
    Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
    , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
    Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  3. Cited for: GENOME REANNOTATION.
    Strain: Berkeley.
  4. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
    Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
    Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  5. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
    Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
    Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  6. Stapleton M., Carlson J., Chavez C., Frise E., George R., Pacleb J., Park S., Wan K., Yu C., Rubin G.M., Celniker S.
    Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BerkeleyImported.
  7. "Combined evidence annotation of transposable elements in genome sequences."
    Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
    PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  8. Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. "Drosophila melanogaster release 4 sequence."
    Berkeley Drosophila Genome Project
    Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  10. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
    Smith C.D., Shu S., Mungall C.J., Karpen G.H.
    Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  11. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  12. FlyBase
    Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ5U156_DROME
AccessioniPrimary (citable) accession number: Q5U156
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: June 11, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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