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Protein
Submitted name:

Uncharacterized protein

Gene

gtf2a1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-DRE-674695. RNA Polymerase II Pre-transcription Events.
R-DRE-6807505. RNA polymerase II transcribes snRNA genes.
R-DRE-73776. RNA Polymerase II Promoter Escape.
R-DRE-73779. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
R-DRE-75953. RNA Polymerase II Transcription Initiation.
R-DRE-76042. RNA Polymerase II Transcription Initiation And Promoter Clearance.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:gtf2a1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 20

Organism-specific databases

ZFINiZDB-GENE-030131-2694. gtf2a1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ5TYT6.

Expressioni

Gene expression databases

BgeeiENSDARG00000011000.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000015974.

Structurei

3D structure databases

ProteinModelPortaliQ5TYT6.
SMRiQ5TYT6. Positions 10-51, 323-369.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiKOG2652. Eukaryota.
ENOG4111M8K. LUCA.
GeneTreeiENSGT00830000128302.
HOGENOMiHOG000015236.
HOVERGENiHBG052771.
InParanoidiQ5TYT6.
TreeFamiTF350445.

Family and domain databases

CDDicd07976. TFIIA_alpha_beta_like. 2 hits.
Gene3Di1.10.287.100. 1 hit.
2.30.18.10. 1 hit.
InterProiIPR009083. TFIIA_a-hlx.
IPR004855. TFIIA_asu/bsu.
IPR013028. TFIIA_asu_N.
IPR009088. TFIIA_b-brl.
[Graphical view]
PANTHERiPTHR12694. PTHR12694. 1 hit.
PfamiPF03153. TFIIA. 1 hit.
[Graphical view]
SMARTiSM01371. TFIIA. 1 hit.
[Graphical view]
SUPFAMiSSF47396. SSF47396. 1 hit.
SSF50784. SSF50784. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5TYT6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSANSNQV PKLYRSVMED VIAEVRELFL DEGVDEQVLM ELKTLWESKL
60 70 80 90 100
MQSKAVDGFH TEEQQVLHAQ QQQAQAQQTQ PQTQPQQVLL PPAQTTPQQQ
110 120 130 140 150
VIVQDAKIMQ HMSATGMSAA ATAATLALPT GVAPFQQLIT PQGQILQVVR
160 170 180 190 200
AANGAQYIIQ PQQQMLLQQQ VLPQMQPGGV QAPVIQQVLT PLQGGLPQQT
210 220 230 240 250
GVIIQPQQIV LTGNKVPQNT QVMQAAAMAV QSGPGDAQVQ TQPQAQQQQQ
260 270 280 290 300
QQQQQASQQP PMMLQVDGAG DTSSEEDEEE EDEYDEDEDE DKEKDGGEDG
310 320 330 340 350
QVEEEPLNSG DDVSDEEDQE LFDTENVVVC QYDKIHRSKN KWKFHLKDGI
360
MNLNGRDFVF SKAIGDAEW
Length:369
Mass (Da):40,785
Last modified:December 7, 2004 - v1
Checksum:iAE42C437C1101CAF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX890568 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSDART00000006443; ENSDARP00000015974; ENSDARG00000011000.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX890568 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliQ5TYT6.
SMRiQ5TYT6. Positions 10-51, 323-369.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000015974.

Proteomic databases

PaxDbiQ5TYT6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000006443; ENSDARP00000015974; ENSDARG00000011000.

Organism-specific databases

ZFINiZDB-GENE-030131-2694. gtf2a1.

Phylogenomic databases

eggNOGiKOG2652. Eukaryota.
ENOG4111M8K. LUCA.
GeneTreeiENSGT00830000128302.
HOGENOMiHOG000015236.
HOVERGENiHBG052771.
InParanoidiQ5TYT6.
TreeFamiTF350445.

Enzyme and pathway databases

ReactomeiR-DRE-674695. RNA Polymerase II Pre-transcription Events.
R-DRE-6807505. RNA polymerase II transcribes snRNA genes.
R-DRE-73776. RNA Polymerase II Promoter Escape.
R-DRE-73779. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
R-DRE-75953. RNA Polymerase II Transcription Initiation.
R-DRE-76042. RNA Polymerase II Transcription Initiation And Promoter Clearance.

Gene expression databases

BgeeiENSDARG00000011000.

Family and domain databases

CDDicd07976. TFIIA_alpha_beta_like. 2 hits.
Gene3Di1.10.287.100. 1 hit.
2.30.18.10. 1 hit.
InterProiIPR009083. TFIIA_a-hlx.
IPR004855. TFIIA_asu/bsu.
IPR013028. TFIIA_asu_N.
IPR009088. TFIIA_b-brl.
[Graphical view]
PANTHERiPTHR12694. PTHR12694. 1 hit.
PfamiPF03153. TFIIA. 1 hit.
[Graphical view]
SMARTiSM01371. TFIIA. 1 hit.
[Graphical view]
SUPFAMiSSF47396. SSF47396. 1 hit.
SSF50784. SSF50784. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ5TYT6_DANRE
AccessioniPrimary (citable) accession number: Q5TYT6
Entry historyi
Integrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: September 7, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.