Q5TKP3 (Q5TKP3_ORYSJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative 60S ribosomal L28 protein EMBL AAV67824.1

Gene names

Name:

OJ1362_G11.15 EMBL AAV67824.1

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome]

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	147 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 3IZR Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	cell wall Inferred from electronic annotation. Source: EnsemblPlants/Gramene chloroplast Inferred from electronic annotation. Source: EnsemblPlants/Gramene cytosolic large ribosomal subunit Inferred from electronic annotation. Source: EnsemblPlants/Gramene plasma membrane Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5TKP3 [UniParc]. Last modified December 21, 2004. Version 1. Checksum: 3092AB54910D925B	FASTA	147	16,606
	10 20 30 40 50 60 MATVPEPLIW EIVKKNNCFL VKQFGNSNAK VQFTKEPNNL YNVHSYKHSG LANKKTVTIQ 70 80 90 100 110 120 PSGVKDAAVV LSTTKTKKQN APAKLYHKSV MRKEFRKMAK AVKNQVSDNY YRPDLTKPAL 130 140 ARLSSVYRSL QVSKSGAKKK NRQPTKL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[3]	"Localization of eukaryote-specific ribosomal proteins in a 5.5-A cryo-EM map of the 80S eukaryotic ribosome." Armache J.P., Jarasch A., Anger A.M., Villa E., Becker T., Bhushan S., Jossinet F., Habeck M., Dindar G., Franckenberg S., Marquez V., Mielke T., Thomm M., Berninghausen O., Beatrix B., Soding J., Westhof E., Wilson D.N., Beckmann R. Proc. Natl. Acad. Sci. U.S.A. 107:19754-19759(2010) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.50 ANGSTROMS).
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AC104713 Genomic DNA. Translation: AAV67824.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3IZR	electron microscopy	5.50	b	1-147	[»]

ModBase

Search...

Proteomic databases

PRIDE

Q5TKP3.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblPlants

LOC_Os05g46430.1; LOC_Os05g46430.1; LOC_Os05g46430.

Organism-specific databases

Gramene

Q5TKP3.

Phylogenomic databases

OMA

KANHYRT.

Gene expression databases

ArrayExpress

Q5TKP3.

Family and domain databases

InterPro

IPR002672. Ribosomal_L28e.
[Graphical view]

PANTHER

PTHR10544. PTHR10544. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q5TKP3_ORYSJ

Accession

Primary (citable) accession number: Q5TKP3

Entry history

Integrated into UniProtKB/TrEMBL:	December 21, 2004
Last sequence update:	December 21, 2004
Last modified:	May 29, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)