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Q5TEJ8 (THMS2_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein THEMIS2
Alternative name(s):
Induced by contact to basement membrane 1 protein
Short name=Protein ICB-1
Thymocyte-expressed molecule involved in selection protein 2
Gene names
Name:THEMIS2
Synonyms:C1orf38, ICB1
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length643 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

May constitute a control point in macrophage inflammatory response, promoting LPS-induced TNF production. Ref.7

Subunit structure

When phosphorylated, interacts with LYN. Interacts with VAV1 and GRB2 By similarity.

Tissue specificity

Expressed in different endometrial adenocarcinoma cell lines and various other cell lines aprat from the prostate cell line LNCAP and the ovarian cancer cell line BG-1. Ref.5

Induction

By contact to a reconstituted basement membrane.

Post-translational modification

Phosphorylation at Tyr-632 is induced by LPS By similarity.

Sequence similarities

Belongs to the themis family.

Sequence caution

The sequence AAC16284.1 differs from that shown. Reason: Frameshift at positions 416, 469, 494, 530 and 532.

The sequence BAA96464.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence BAB33313.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence BAG64201.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence CAI21769.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAI21771.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAI21773.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Biological processImmunity
Inflammatory response
   Coding sequence diversityAlternative splicing
Polymorphism
   PTMPhosphoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processcell adhesion

Traceable author statement. Source: ProtInc

inflammatory response

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Alternative products

This entry describes 6 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q5TEJ8-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q5TEJ8-2)

Also known as: ICB1-beta;

The sequence of this isoform differs from the canonical sequence as follows:
     216-260: MRRTIVKIPS...EVLAWEGPFP → IFSSLRIAAT...SCPQEGPQAR
     261-643: Missing.
Note: No experimental confirmation available.
Isoform 3 (identifier: Q5TEJ8-3)

Also known as: ICB1-gamma;

The sequence of this isoform differs from the canonical sequence as follows:
     252-396: Missing.
Isoform 4 (identifier: Q5TEJ8-4)

The sequence of this isoform differs from the canonical sequence as follows:
     79-123: GYFTPLNTPQ...THRIVTEGRV → VFSSLRIAAT...SCPQEGPQAR
     124-643: Missing.
Isoform 5 (identifier: Q5TEJ8-5)

The sequence of this isoform differs from the canonical sequence as follows:
     268-396: Missing.
Note: No experimental confirmation available.
Isoform 6 (identifier: Q5TEJ8-6)

The sequence of this isoform differs from the canonical sequence as follows:
     186-381: Missing.
Note: No experimental confirmation available.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 643643Protein THEMIS2
PRO_0000084143

Regions

Region1 – 238238CABIT 1
Region239 – 514276CABIT 2
Compositional bias404 – 4096Poly-Glu
Compositional bias626 – 63712Asp/Glu-rich

Amino acid modifications

Modified residue6321Phosphotyrosine By similarity

Natural variations

Alternative sequence79 – 12345GYFTP…TEGRV → VFSSLRIAATRSAAQTQGED LARVHQGWLQYVQQDSCPQE GPQAR in isoform 4.
VSP_015328
Alternative sequence124 – 643520Missing in isoform 4.
VSP_015329
Alternative sequence186 – 381196Missing in isoform 6.
VSP_037966
Alternative sequence216 – 26045MRRTI…EGPFP → IFSSLRIAATRSAAQTQGED LARVHQGWLQYVQQDSCPQE GPQAR in isoform 2.
VSP_015326
Alternative sequence252 – 396145Missing in isoform 3.
VSP_015330
Alternative sequence261 – 643383Missing in isoform 2.
VSP_015327
Alternative sequence268 – 396129Missing in isoform 5.
VSP_037967
Natural variant4311V → L.
Corresponds to variant rs35995543 [ dbSNP | Ensembl ].
VAR_051060
Natural variant5111K → E. Ref.2 Ref.6
Corresponds to variant rs3766400 [ dbSNP | Ensembl ].
VAR_051061

Experimental info

Sequence conflict4511L → M in AAC16284. Ref.6
Sequence conflict4661T → N in AAC16284. Ref.6
Sequence conflict5041W → R in AAC16284. Ref.6
Sequence conflict5381R → C in AAC16284. Ref.6
Sequence conflict5841A → V in AAC16284. Ref.6

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: 1D5FA24F88D2F8EA

FASTA64372,049
        10         20         30         40         50         60 
MEPVPLQDFV RALDPASLPR VLRVCSGVYF EGSIYEISGN ECCLSTGDLI KVTQVRLQKV 

        70         80         90        100        110        120 
VCENPKTSQT MELAPNFQGY FTPLNTPQSY ETLEELVSAT TQSSKQLPTC FMSTHRIVTE 

       130        140        150        160        170        180 
GRVVTEDQLL MLEAVVMHLG IRSARCVLGM EGQQVILHLP LSQKGPFWTW EPSAPRTLLQ 

       190        200        210        220        230        240 
VLQDPALKDL VLTCPTLPWH SLILRPQYEI QAIMHMRRTI VKIPSTLEVD VEDVTASSRH 

       250        260        270        280        290        300 
VHFIKPLLLS EVLAWEGPFP LSMEILEVPE GRPIFLSPWV GSLQKGQRLC VYGLASPPWR 

       310        320        330        340        350        360 
VLASSKGRKV PRHFLVSGGY QGKLRRRPRE FPTAYDLLGA FQPGRPLRVV ATKDCEGERE 

       370        380        390        400        410        420 
ENPEFTSLAV GDRLEVLGPG QAHGAQGSDV DVLVCQRLSD QAGEDEEEEC KEEAESPERV 

       430        440        450        460        470        480 
LLPFHFPGSF VEEMSDSRRY SLADLTAQFS LPCEVKVVAK DTSHPTDPLT SFLGLRLEEK 

       490        500        510        520        530        540 
ITEPFLVVSL DSEPGMCFEI PPRWLDLTVV KAKGQPDLPE GSLPIATVEE LTDTFYYRLR 

       550        560        570        580        590        600 
KLPACEIQAP PPRPPKNQGL SKQRRHSSEG GVKSSQVLGL QQHARLPKPK AKTLPEFIKD 

       610        620        630        640 
GSSTYSKIPA HRKGHRPAKP QRQDLDDDEH DYEEILEQFQ KTI 

« Hide

Isoform 2 (ICB1-beta) [UniParc].

Checksum: B4B5C4BFF16682D7
Show »

FASTA26029,118
Isoform 3 (ICB1-gamma) [UniParc].

Checksum: F87DC9EA1DF4901D
Show »

FASTA49856,130
Isoform 4 [UniParc].

Checksum: FA37B14081402515
Show »

FASTA12313,628
Isoform 5 [UniParc].

Checksum: C5FA6EECF503BD9C
Show »

FASTA51457,943
Isoform 6 [UniParc].

Checksum: 5E02ACFCD1435979
Show »

FASTA44750,028

References

« Hide 'large scale' references
[1]"The full-ORF clone resource of the German cDNA consortium."
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I.
BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4).
Tissue: Testis.
[2]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 6), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 4-643 (ISOFORM 5), VARIANT GLU-511.
Tissue: Thymus.
[3]"The DNA sequence and biological annotation of human chromosome 1."
Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. expand/collapse author list , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
Nature 441:315-321(2006) [PubMed: 16710414] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[4]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
Tissue: Brain.
[5]"A novel basement membrane-induced gene identified in the human endometrial adenocarcinoma cell line HEC1B."
Treeck O., Strunck E., Vollmer G.
FEBS Lett. 425:426-430(1998) [PubMed: 9563507] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 112-643 (ISOFORM 1), TISSUE SPECIFICITY.
Tissue: Endometrial adenocarcinoma.
[6]Tanaka K., Imai H., Odani T., Tachibana M., Fujita S.
Submitted (NOV-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 112-643 (ISOFORM 3), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 143-643 (ISOFORM 2), VARIANT GLU-511.
Tissue: Leukocyte.
[7]"Themis2/ICB1 is a signaling scaffold that selectively regulates macrophage Toll-like receptor signaling and cytokine production."
Peirce M.J., Brook M., Morrice N., Snelgrove R., Begum S., Lanfrancotti A., Notley C., Hussell T., Cope A.P., Wait R.
PLoS ONE 5:E11465-E11465(2010) [PubMed: 20644716] [Abstract]
Cited for: FUNCTION.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR749321 mRNA. Translation: CAH18176.1.
AK303090 mRNA. Translation: BAG64201.1. Different initiation.
AK303141 mRNA. Translation: BAG64245.1.
AL109927 Genomic DNA. Translation: CAI21769.1. Sequence problems.
AL109927 Genomic DNA. Translation: CAI21770.1.
AL109927 Genomic DNA. Translation: CAI21771.1. Sequence problems.
AL109927 Genomic DNA. Translation: CAI21772.1.
AL109927 Genomic DNA. Translation: CAI21773.1. Sequence problems.
BC031655 mRNA. Translation: AAH31655.2.
BC132692 mRNA. Translation: AAI32693.1.
BC133049 mRNA. Translation: AAI33050.1.
AF044895 mRNA. Translation: AAC16284.1. Frameshift.
AB050854 mRNA. Translation: BAB33313.1. Different initiation.
AB035482 mRNA. Translation: BAA96464.1. Different initiation.
IPIIPI00003922.
IPI00307376.
IPI00470916.
IPI00514477.
IPI00943840.
IPI00943868.
RefSeqNP_001034566.1. NM_001039477.1.
NP_001099026.1. NM_001105556.1.
NP_004839.2. NM_004848.2.
UniGeneHs.10649.

3D structure databases

ProteinModelPortalQ5TEJ8.
ModBaseSearch...

Protein-protein interaction databases

IntActQ5TEJ8. 2 interactions.
STRINGQ5TEJ8.

PTM databases

PhosphoSiteQ5TEJ8.

Polymorphism databases

DMDM73920021.

Proteomic databases

PRIDEQ5TEJ8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000328928; ENSP00000329862; ENSG00000130775.
ENST00000373921; ENSP00000363031; ENSG00000130775.
GeneID9473.
KEGGhsa:9473.
UCSCuc001boz.1. human.
uc001bpa.1. human.
uc001bpb.1. human.
uc001bpc.2. human.

Organism-specific databases

CTD9473.
GeneCardsGC01P028199.
HGNCHGNC:16839. C1orf38.
HPAHPA031096.
HPA031097.
neXtProtNX_Q5TEJ8.
PharmGKBPA128394550.
GenAtlasSearch...

Phylogenomic databases

eggNOGprNOG08135.
GeneTreeENSGT00530000063770.
InParanoidQ5TEJ8.
OMAVATKDCE.
OrthoDBEOG4FR0R4.

Gene expression databases

ArrayExpressQ5TEJ8.
BgeeQ5TEJ8.
CleanExHS_C1orf38.
GenevestigatorQ5TEJ8.
GermOnlineENSG00000130775. Homo sapiens.

Family and domain databases

ProtoNetSearch...

Other

NextBio35498.

Entry information

Entry nameTHMS2_HUMAN
AccessionPrimary (citable) accession number: Q5TEJ8
Secondary accession number(s): A2RTZ3 expand/collapse secondary AC list , B4DZT9, B4DZY3, O60560, Q5TEJ1, Q5TEJ9, Q5TEK1, Q68DP4, Q9BYB6, Q9NS90
Entry history
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: December 21, 2004
Last modified: January 25, 2012
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 1

Human chromosome 1: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

SIMILARITY comments

Index of protein domains and families