Q5TEJ8 (THMS2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 60.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Protein THEMIS2 Alternative name(s): Induced by contact to basement membrane 1 protein Short name=Protein ICB-1 Thymocyte-expressed molecule involved in selection protein 2 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 643 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Function | May constitute a control point in macrophage inflammatory response, promoting LPS-induced TNF production. Ref.7 |
| Subunit structure | When phosphorylated, interacts with LYN. Interacts with VAV1 and GRB2 By similarity. |
| Tissue specificity | Expressed in different endometrial adenocarcinoma cell lines and various other cell lines aprat from the prostate cell line LNCAP and the ovarian cancer cell line BG-1. Ref.5 |
| Induction | By contact to a reconstituted basement membrane. |
| Post-translational modification | Phosphorylation at Tyr-632 is induced by LPS By similarity. |
| Sequence similarities | Belongs to the themis family. |
| Sequence caution | The sequence AAC16284.1 differs from that shown. Reason: Frameshift at positions 416, 469, 494, 530 and 532. The sequence BAA96464.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAB33313.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAG64201.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence CAI21769.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAI21771.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAI21773.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Immunity Inflammatory response |
| Coding sequence diversity | Alternative splicing Polymorphism |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | cell adhesion Traceable author statement. Source: ProtInc inflammatory responseInferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q5TEJ8-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q5TEJ8-2) Also known as: ICB1-beta; The sequence of this isoform differs from the canonical sequence as follows: 216-260: MRRTIVKIPS...EVLAWEGPFP → IFSSLRIAAT...SCPQEGPQAR 261-643: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: Q5TEJ8-3) Also known as: ICB1-gamma; The sequence of this isoform differs from the canonical sequence as follows: 252-396: Missing. | ||||||
| Isoform 4 (identifier: Q5TEJ8-4) The sequence of this isoform differs from the canonical sequence as follows: 79-123: GYFTPLNTPQ...THRIVTEGRV → VFSSLRIAAT...SCPQEGPQAR 124-643: Missing. | ||||||
| Isoform 5 (identifier: Q5TEJ8-5) The sequence of this isoform differs from the canonical sequence as follows: 268-396: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 6 (identifier: Q5TEJ8-6) The sequence of this isoform differs from the canonical sequence as follows: 186-381: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 643 | 643 | Protein THEMIS2 | PRO_0000084143 | |||||
Regions | |||||||||
| Region | 1 – 238 | 238 | CABIT 1 | ||||||
| Region | 239 – 514 | 276 | CABIT 2 | ||||||
| Compositional bias | 404 – 409 | 6 | Poly-Glu | ||||||
| Compositional bias | 626 – 637 | 12 | Asp/Glu-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 632 | 1 | Phosphotyrosine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 79 – 123 | 45 | GYFTP…TEGRV → VFSSLRIAATRSAAQTQGED LARVHQGWLQYVQQDSCPQE GPQAR in isoform 4. | VSP_015328 | |||||
| Alternative sequence | 124 – 643 | 520 | Missing in isoform 4. | VSP_015329 | |||||
| Alternative sequence | 186 – 381 | 196 | Missing in isoform 6. | VSP_037966 | |||||
| Alternative sequence | 216 – 260 | 45 | MRRTI…EGPFP → IFSSLRIAATRSAAQTQGED LARVHQGWLQYVQQDSCPQE GPQAR in isoform 2. | VSP_015326 | |||||
| Alternative sequence | 252 – 396 | 145 | Missing in isoform 3. | VSP_015330 | |||||
| Alternative sequence | 261 – 643 | 383 | Missing in isoform 2. | VSP_015327 | |||||
| Alternative sequence | 268 – 396 | 129 | Missing in isoform 5. | VSP_037967 | |||||
| Natural variant | 431 | 1 | V → L. Corresponds to variant rs35995543 [ dbSNP | Ensembl ]. | VAR_051060 | |||||
| Natural variant | 511 | 1 | K → E. Ref.2 Ref.6 Corresponds to variant rs3766400 [ dbSNP | Ensembl ]. | VAR_051061 | |||||
Experimental info | |||||||||
| Sequence conflict | 451 | 1 | L → M in AAC16284. Ref.6 | ||||||
| Sequence conflict | 466 | 1 | T → N in AAC16284. Ref.6 | ||||||
| Sequence conflict | 504 | 1 | W → R in AAC16284. Ref.6 | ||||||
| Sequence conflict | 538 | 1 | R → C in AAC16284. Ref.6 | ||||||
| Sequence conflict | 584 | 1 | A → V in AAC16284. Ref.6 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Tissue: Testis. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 6), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 4-643 (ISOFORM 5), VARIANT GLU-511. Tissue: Thymus. |
| [3] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed: 16710414] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Brain. |
| [5] | "A novel basement membrane-induced gene identified in the human endometrial adenocarcinoma cell line HEC1B." Treeck O., Strunck E., Vollmer G. FEBS Lett. 425:426-430(1998) [PubMed: 9563507] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 112-643 (ISOFORM 1), TISSUE SPECIFICITY. Tissue: Endometrial adenocarcinoma. |
| [6] | Tanaka K., Imai H., Odani T., Tachibana M., Fujita S. Submitted (NOV-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 112-643 (ISOFORM 3), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 143-643 (ISOFORM 2), VARIANT GLU-511. Tissue: Leukocyte. |
| [7] | "Themis2/ICB1 is a signaling scaffold that selectively regulates macrophage Toll-like receptor signaling and cytokine production." Peirce M.J., Brook M., Morrice N., Snelgrove R., Begum S., Lanfrancotti A., Notley C., Hussell T., Cope A.P., Wait R. PLoS ONE 5:E11465-E11465(2010) [PubMed: 20644716] [Abstract] Cited for: FUNCTION. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CR749321 mRNA. Translation: CAH18176.1. AK303090 mRNA. Translation: BAG64201.1. Different initiation. AK303141 mRNA. Translation: BAG64245.1. AL109927 Genomic DNA. Translation: CAI21769.1. Sequence problems. AL109927 Genomic DNA. Translation: CAI21770.1. AL109927 Genomic DNA. Translation: CAI21771.1. Sequence problems. AL109927 Genomic DNA. Translation: CAI21772.1. AL109927 Genomic DNA. Translation: CAI21773.1. Sequence problems. BC031655 mRNA. Translation: AAH31655.2. BC132692 mRNA. Translation: AAI32693.1. BC133049 mRNA. Translation: AAI33050.1. AF044895 mRNA. Translation: AAC16284.1. Frameshift. AB050854 mRNA. Translation: BAB33313.1. Different initiation. AB035482 mRNA. Translation: BAA96464.1. Different initiation. |
| IPI | IPI00003922. IPI00307376. IPI00470916. IPI00514477. IPI00943840. IPI00943868. |
| RefSeq | NP_001034566.1. NM_001039477.1. NP_001099026.1. NM_001105556.1. NP_004839.2. NM_004848.2. |
| UniGene | Hs.10649. |
3D structure databases | |
| ProteinModelPortal | Q5TEJ8. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q5TEJ8. 2 interactions. |
| STRING | Q5TEJ8. |
PTM databases | |
| PhosphoSite | Q5TEJ8. |
Polymorphism databases | |
| DMDM | 73920021. |
Proteomic databases | |
| PRIDE | Q5TEJ8. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000328928; ENSP00000329862; ENSG00000130775. ENST00000373921; ENSP00000363031; ENSG00000130775. |
| GeneID | 9473. |
| KEGG | hsa:9473. |
| UCSC | uc001boz.1. human. uc001bpa.1. human. uc001bpb.1. human. uc001bpc.2. human. |
Organism-specific databases | |
| CTD | 9473. |
| GeneCards | GC01P028199. |
| HGNC | HGNC:16839. C1orf38. |
| HPA | HPA031096. HPA031097. |
| neXtProt | NX_Q5TEJ8. |
| PharmGKB | PA128394550. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG08135. |
| GeneTree | ENSGT00530000063770. |
| InParanoid | Q5TEJ8. |
| OMA | VATKDCE. |
| OrthoDB | EOG4FR0R4. |
Gene expression databases | |
| ArrayExpress | Q5TEJ8. |
| Bgee | Q5TEJ8. |
| CleanEx | HS_C1orf38. |
| Genevestigator | Q5TEJ8. |
| GermOnline | ENSG00000130775. Homo sapiens. |
Family and domain databases | |
| ProtoNet | Search... |
Other | |
| NextBio | 35498. |
Entry information
| Entry name | THMS2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q5TEJ8 Secondary accession number(s): A2RTZ3 Q9NS90 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| SIMILARITY comments Index of protein domains and families |

Clusters with