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Q5TDE7

- Q5TDE7_HUMAN

UniProt

Q5TDE7 - Q5TDE7_HUMAN

Protein
Submitted name:

E3 ubiquitin-protein ligase RNF220

Gene

RNF220

Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (05 Feb 2008)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    E3 ubiquitin-protein ligase RNF220Imported
    Gene namesi
    Name:RNF220Imported
    OrganismiHomo sapiens (Human)Imported
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 1

    Organism-specific databases

    HGNCiHGNC:25552. RNF220.

    PTM / Processingi

    Proteomic databases

    PRIDEiQ5TDE7.

    Expressioni

    Gene expression databases

    ArrayExpressiQ5TDE7.

    Structurei

    3D structure databases

    ProteinModelPortaliQ5TDE7.
    SMRiQ5TDE7. Positions 226-257.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000231748.
    HOVERGENiHBG055526.

    Family and domain databases

    Gene3Di3.30.40.10. 1 hit.
    InterProiIPR013083. Znf_RING/FYVE/PHD.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q5TDE7-1 [UniParc]FASTAAdd to Basket

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    MPRARSGRRS RGAGGREETF LRVRANRQTR LNARIGKMKR RKQDEGQREG    50
    SCMAEDDAVD IEHENNNRFE EYEWCGQKRI RATTLLEGGF RGSGFIMCSG 100
    KENPDSDADL DVDGDDTLEY GKPQYTEADV IPCTGEEPGE AKEREALRGA 150
    VLNGGPPSTR ITPEFSKWAS DEMPSTSNGE SSKQEAMQKT CKNSDIEKIT 200
    EDSAVTTFEA LKARVRELER QLSRGDRYKC LICMDSYSMP LTSIQCWHVH 250
    CEECWLRTL 259
    Length:259
    Mass (Da):29,305
    Last modified:February 5, 2008 - v1
    Checksum:iA0F41E7A203B68F7
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei259 – 2591Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL122004 Genomic DNA. No translation available.
    AL359373 Genomic DNA. No translation available.
    AL596225 Genomic DNA. No translation available.
    KF495935 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENST00000440132; ENSP00000388533; ENSG00000187147.
    UCSCiuc001clx.2. human.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL122004 Genomic DNA. No translation available.
    AL359373 Genomic DNA. No translation available.
    AL596225 Genomic DNA. No translation available.
    KF495935 Genomic DNA. No translation available.

    3D structure databases

    ProteinModelPortali Q5TDE7.
    SMRi Q5TDE7. Positions 226-257.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q5TDE7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000440132 ; ENSP00000388533 ; ENSG00000187147 .
    UCSCi uc001clx.2. human.

    Organism-specific databases

    HGNCi HGNC:25552. RNF220.
    GenAtlasi Search...

    Phylogenomic databases

    HOGENOMi HOG000231748.
    HOVERGENi HBG055526.

    Miscellaneous databases

    ChiTaRSi RNF220. human.
    NextBioi 35539912.

    Gene expression databases

    ArrayExpressi Q5TDE7.

    Family and domain databases

    Gene3Di 3.30.40.10. 1 hit.
    InterProi IPR013083. Znf_RING/FYVE/PHD.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The DNA sequence and biological annotation of human chromosome 1."
      Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
      , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S., McLaren S., Milne S., Mistry S., Moore M.J., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R., Banerjee R., Bryant S.P., Burford D.C., Burrill W.D., Clegg S.M., Dhami P., Dovey O., Faulkner L.M., Gribble S.M., Langford C.F., Pandian R.D., Porter K.M., Prigmore E.
      Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    3. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    4. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiQ5TDE7_HUMAN
    AccessioniPrimary (citable) accession number: Q5TDE7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 5, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3