Q5TCS8 (AKD1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 75.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Adenylate kinase domain-containing protein 1 Alternative name(s): Adenylate kinase domain-containing protein 2 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1911 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Post-translational modification | |
| Sequence similarities | Belongs to the adenylate kinase family. |
| Sequence caution | The sequence AAI01715.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence AAI11949.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAC05368.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing |
| Domain | Coiled coil |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | nucleobase-containing compound metabolic process Inferred from electronic annotation. Source: InterPro |
| Molecular function | ATP binding Inferred from electronic annotation. Source: InterPro nucleobase-containing compound kinase activityInferred from electronic annotation. Source: InterPro nucleoside-triphosphatase activityInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 4 (identifier: Q5TCS8-4) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 1 (identifier: Q5TCS8-1) The sequence of this isoform differs from the canonical sequence as follows: 703-751: EARKATEEEL...EIEGDELEVH → KSHRRGIETR...CYCKQLQYFK 752-1911: Missing. | ||||||
| Note: No experimental confirmation available. Phosphorylated on Ser-724. | ||||||
| Isoform 2 (identifier: Q5TCS8-2) The sequence of this isoform differs from the canonical sequence as follows: 420-421: VD → TN 422-1911: Missing. | ||||||
| Isoform 3 (identifier: Q5TCS8-3) The sequence of this isoform differs from the canonical sequence as follows: 989-1014: APPLRICLVGPQGSGKTMCGRQLAEK → VRQYSYLNDCSHRIFLGLITNHHQFT 1015-1911: Missing. | ||||||
| Isoform 5 (identifier: Q5TCS8-5) The sequence of this isoform differs from the canonical sequence as follows: 1-921: Missing. 1212-1257: NVVRDDEEIS...SGEEDEEQET → VSSFVFFFKT...GSSHLSLSKC 1258-1911: Missing. | ||||||
| Isoform 6 (identifier: Q5TCS8-6) The sequence of this isoform differs from the canonical sequence as follows: 1212-1283: NVVRDDEEIS...DTHNLQIIQD → PNKEKRKRGI...LSKQNIHNQK 1284-1911: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1911 | 1911 | Adenylate kinase domain-containing protein 1 | PRO_0000304138 | |||||
Regions | |||||||||
| Coiled coil | 443 – 485 | 43 | Potential | ||||||
| Coiled coil | 676 – 711 | 36 | Potential | ||||||
| Compositional bias | 198 – 275 | 78 | Glu-rich | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 921 | 921 | Missing in isoform 5. | VSP_039638 | |||||
| Alternative sequence | 420 – 421 | 2 | VD → TN in isoform 2. | VSP_028008 | |||||
| Alternative sequence | 422 – 1911 | 1490 | Missing in isoform 2. | VSP_028009 | |||||
| Alternative sequence | 703 – 751 | 49 | EARKA…ELEVH → KSHRRGIETRRRKSKATGTY ESEGKRQAQIAMTDDVSWYC YCKQLQYFK in isoform 1. | VSP_039639 | |||||
| Alternative sequence | 752 – 1911 | 1160 | Missing in isoform 1. | VSP_039640 | |||||
| Alternative sequence | 989 – 1014 | 26 | APPLR…QLAEK → VRQYSYLNDCSHRIFLGLIT NHHQFT in isoform 3. | VSP_028010 | |||||
| Alternative sequence | 1015 – 1911 | 897 | Missing in isoform 3. | VSP_028011 | |||||
| Alternative sequence | 1212 – 1283 | 72 | NVVRD…QIIQD → PNKEKRKRGISENTTCYKCN HMSPWCEYAGLPYRGLLILY SATATATAGTKHCRSGAKVI VALSKQNIHNQK in isoform 6. | VSP_039641 | |||||
| Alternative sequence | 1212 – 1257 | 46 | NVVRD…EEQET → VSSFVFFFKTGSHSVAQGRV QWHNHSSLQPRTPGLKGSSH LSLSKC in isoform 5. | VSP_039642 | |||||
| Alternative sequence | 1258 – 1911 | 654 | Missing in isoform 5. | VSP_039643 | |||||
| Alternative sequence | 1284 – 1911 | 628 | Missing in isoform 6. | VSP_039644 | |||||
Experimental info | |||||||||
| Sequence conflict | 222 | 1 | I → T in BAB70945. Ref.1 | ||||||
| Sequence conflict | 1716 | 1 | K → R in BAC05368. Ref.1 | ||||||
Sequences
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References
| [1] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 5), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 431-1911 (ISOFORM 3), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1563-1911 (ISOFORM 4). Tissue: Caudate nucleus, Hair follicle dermal papilla, Placenta, Testis and Thymus. |
| [2] | "The DNA sequence and analysis of human chromosome 6." Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D. Beck S.Nature 425:805-811(2003) [PubMed: 14574404] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1067-1911 (ISOFORM 6), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1587-1911 (ISOFORM 4). Tissue: Heart, Lung, Pituitary and Testis. |
| [5] | "Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra." Yu L.-R., Zhu Z., Chan K.C., Issaq H.J., Dimitrov D.S., Veenstra T.D. J. Proteome Res. 6:4150-4162(2007) [PubMed: 17924679] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-724 (ISOFORM 1), MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AK055538 mRNA. Translation: BAB70945.1. AK098657 mRNA. Translation: BAC05368.1. Different initiation. AK124171 mRNA. No translation available. AK131244 mRNA. Translation: BAD18424.1. AK315561 mRNA. Translation: BAG37937.1. AL133472, AL121788 Genomic DNA. Translation: CAI19667.1. AL133472, AL121788 Genomic DNA. Translation: CAI19668.1. AL121788, AL133472 Genomic DNA. Translation: CAI22498.1. AL121788, AL133472 Genomic DNA. Translation: CAI22499.1. AL109947 Genomic DNA. No translation available. AL139391 Genomic DNA. No translation available. CH471051 Genomic DNA. Translation: EAW48333.1. BC022031 mRNA. Translation: AAH22031.1. BC087860 mRNA. Translation: AAH87860.1. BC101714 mRNA. Translation: AAI01715.1. Different initiation. BC111948 mRNA. Translation: AAI11949.1. Different initiation. |
| IPI | IPI00418605. IPI00552962. IPI00556253. IPI00641136. IPI00856053. IPI00930224. |
| RefSeq | NP_001138600.2. NM_001145128.2. NP_659462.1. NM_145025.4. |
| UniGene | Hs.205144. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1KAG based on UniProtKB P0A6D7. |
| ProteinModelPortal | Q5TCS8. |
| SMR | Q5TCS8. Positions 28-291, 393-428, 1414-1602. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q5TCS8. 2 interactions. |
| MINT | MINT-1369939. |
PTM databases | |
| PhosphoSite | Q5TCS8. |
Polymorphism databases | |
| DMDM | 302393675. |
Proteomic databases | |
| PRIDE | Q5TCS8. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000368948; ENSP00000357944; ENSG00000155085. |
| GeneID | 221264. |
| KEGG | hsa:221264. |
| UCSC | uc003ptr.2. human. |
Organism-specific databases | |
| CTD | 221264. |
| GeneCards | GC06M109814. |
| HGNC | HGNC:33814. AKD1. |
| HPA | HPA031779. |
| neXtProt | NX_Q5TCS8. |
| PharmGKB | PA162380441. PA164715270. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOVERGEN | HBG107661. |
| OMA | LGIFHIQ. |
Gene expression databases | |
| ArrayExpress | Q5TCS8. |
| Bgee | Q5TCS8. |
| CleanEx | HS_C6orf199. |
| Genevestigator | Q5TCS8. |
Family and domain databases | |
| InterPro | IPR000850. Adenylate_kin. IPR003593. ATPase_AAA+_core. IPR007029. YHS. [Graphical view] |
| PANTHER | PTHR23359. Adenylate_kin. 1 hit. |
| Pfam | PF00406. ADK. 3 hits. PF04945. YHS. 1 hit. [Graphical view] |
| SMART | SM00382. AAA. 3 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 91262. 91612. |
Entry information
| Entry name | AKD1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q5TCS8 Secondary accession number(s): A6NL75 Q96NF4 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 6 Human chromosome 6: entries, gene names and cross-references to MIM |
| SIMILARITY comments Index of protein domains and families |

Clusters with