Q5T8P6 (RBM26_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 95.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: RNA-binding protein 26 Alternative name(s): CTCL tumor antigen se70-2 RNA-binding motif protein 26 | ||||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1007 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Sequence similarities | Contains 1 C3H1-type zinc finger. Contains 2 RRM (RNA recognition motif) domains. |
| Sequence caution | The sequence AAG34912.1 differs from that shown. Reason: Erroneous initiation. The sequence BAB14933.1 differs from that shown. Reason: Erroneous initiation. The sequence BAB55125.1 differs from that shown. Reason: Erroneous initiation. The sequence CAI12921.2 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAI95136.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Coiled coil Repeat Zinc-finger |
| Ligand | Metal-binding RNA-binding Zinc |
| PTM | Acetylation Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | mRNA processing Inferred from electronic annotation. Source: InterPro negative regulation of phosphatase activityInferred from direct assay PubMed 19389623. Source: UniProtKB |
| Molecular_function | RNA binding Inferred from electronic annotation. Source: UniProtKB-KW nucleotide bindingInferred from electronic annotation. Source: InterPro zinc ion bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q5T8P6-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q5T8P6-2) The sequence of this isoform differs from the canonical sequence as follows: 663-686: Missing. | ||||||
| Isoform 3 (identifier: Q5T8P6-3) The sequence of this isoform differs from the canonical sequence as follows: 619-621: Missing. 663-686: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: Q5T8P6-4) The sequence of this isoform differs from the canonical sequence as follows: 1-446: Missing. 619-621: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 5 (identifier: Q5T8P6-5) The sequence of this isoform differs from the canonical sequence as follows: 1-446: Missing. 619-621: Missing. 663-686: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 6 (identifier: Q5T8P6-6) The sequence of this isoform differs from the canonical sequence as follows: 110-120: ITKEEEREKKF → VTICVNTLQVI 121-1007: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1007 | 1007 | RNA-binding protein 26 | PRO_0000273376 | |||||
Regions | |||||||||
| Domain | 532 – 606 | 75 | RRM 1 | ||||||
| Domain | 891 – 960 | 70 | RRM 2 | ||||||
| Zinc finger | 288 – 316 | 29 | C3H1-type | ||||||
| Coiled coil | 719 – 795 | 77 | Potential | ||||||
| Coiled coil | 823 – 847 | 25 | Potential | ||||||
| Compositional bias | 134 – 213 | 80 | Arg-rich | ||||||
| Compositional bias | 326 – 420 | 95 | Pro-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 127 | 1 | Phosphoserine Ref.7 Ref.9 Ref.12 Ref.14 | ||||||
| Modified residue | 510 | 1 | N6-acetyllysine Ref.11 | ||||||
| Modified residue | 518 | 1 | Phosphoserine Ref.10 | ||||||
| Modified residue | 616 | 1 | Phosphoserine Ref.8 Ref.10 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 446 | 446 | Missing in isoform 4 and isoform 5. | VSP_022528 | |||||
| Alternative sequence | 110 – 120 | 11 | ITKEEEREKKF → VTICVNTLQVI in isoform 6. | VSP_022529 | |||||
| Alternative sequence | 121 – 1007 | 887 | Missing in isoform 6. | VSP_022530 | |||||
| Alternative sequence | 619 – 621 | 3 | Missing in isoform 3, isoform 4 and isoform 5. | VSP_022531 | |||||
| Alternative sequence | 663 – 686 | 24 | Missing in isoform 2, isoform 3 and isoform 5. | VSP_022532 | |||||
| Natural variant | 718 | 1 | V → D. Corresponds to variant rs10767 [ dbSNP | Ensembl ]. | VAR_030137 | |||||
Experimental info | |||||||||
| Sequence conflict | 12 | 1 | A → T in CAI56708. Ref.5 | ||||||
| Sequence conflict | 66 | 1 | Q → H in CAI56708. Ref.5 | ||||||
| Sequence conflict | 426 | 1 | D → A in CAI56708. Ref.5 | ||||||
| Sequence conflict | 709 | 1 | K → E in BAB55046. Ref.1 | ||||||
| Sequence conflict | 900 | 1 | E → G in BAB55046. Ref.1 | ||||||
| Sequence conflict | 900 | 1 | E → G in BAB55125. Ref.1 | ||||||
| Sequence conflict | 959 | 1 | K → E in BAB14933. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 5). Tissue: Adipose tissue, Embryo, Teratocarcinoma and Testis. |
| [2] | "Functional prediction of the coding sequences of 121 new genes deduced by analysis of cDNA clones from human fetal liver." Zhang C., Yu Y., Zhang S., Wei H., Zhou G., Ouyang S., Luo L., Bi J., Liu M., He F. Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 6). Tissue: Fetal liver. |
| [3] | "The DNA sequence and analysis of human chromosome 13." Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. Ross M.T.Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2; 3 AND 4). Tissue: Lymph. |
| [5] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-911 (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 215-869 (ISOFORM 1). Tissue: Amygdala. |
| [6] | "Serological detection of cutaneous T-cell lymphoma-associated antigens." Eichmueller S., Usener D., Dummer R., Stein A., Thiel D., Schadendorf D. Proc. Natl. Acad. Sci. U.S.A. 98:629-634(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 703-1007. Tissue: Testis. |
| [7] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-127, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [8] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-616, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-127, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-518 AND SER-616, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-510, MASS SPECTROMETRY. |
| [12] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-127, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [13] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [14] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-127, MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AK024610 mRNA. Translation: BAB14933.1. Different initiation. AK027339 mRNA. Translation: BAB55046.1. AK027456 mRNA. Translation: BAB55125.1. Different initiation. AK302871 mRNA. Translation: BAG64052.1. AF116667 mRNA. Translation: AAF71087.1. AL159974, AL139006 Genomic DNA. Translation: CAI12921.2. Sequence problems. AL159974, AL139006 Genomic DNA. Translation: CAI12923.3. AL139006, AL159974 Genomic DNA. Translation: CAI95136.1. Sequence problems. AL139006, AL159974 Genomic DNA. Translation: CAI95137.2. BC041655 mRNA. Translation: AAH41655.1. BC111697 mRNA. Translation: AAI11698.1. BC111739 mRNA. Translation: AAI11740.1. AL834343 mRNA. Translation: CAD39009.3. BX648672 mRNA. Translation: CAI56708.1. AF273052 mRNA. Translation: AAG34912.1. Different initiation. |
| IPI | IPI00032188. IPI00166555. IPI00329545. IPI00646837. IPI00795335. IPI00827541. |
| RefSeq | NP_071401.3. NM_022118.3. |
| UniGene | Hs.558528. |
3D structure databases | |
| ProteinModelPortal | Q5T8P6. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q5T8P6. 3 interactions. |
PTM databases | |
| PhosphoSite | Q5T8P6. |
Polymorphism databases | |
| DMDM | 124021002. |
Proteomic databases | |
| PaxDb | Q5T8P6. |
| PRIDE | Q5T8P6. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000267229; ENSP00000267229; ENSG00000139746. ENST00000327303; ENSP00000327080; ENSG00000139746. ENST00000438724; ENSP00000390222; ENSG00000139746. ENST00000438737; ENSP00000387531; ENSG00000139746. |
| GeneID | 64062. |
| KEGG | hsa:64062. |
| UCSC | uc001vkx.2. human. uc001vky.2. human. uc001vla.2. human. uc001vlc.1. human. |
Organism-specific databases | |
| CTD | 64062. |
| GeneCards | GC13M079888. |
| HGNC | HGNC:20327. RBM26. |
| HPA | HPA040252. |
| neXtProt | NX_Q5T8P6. |
| PharmGKB | PA134982324. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG280405. |
| HOVERGEN | HBG057372. |
| InParanoid | Q5T8P6. |
| KO | K13192. |
Gene expression databases | |
| ArrayExpress | Q5T8P6. |
| Bgee | Q5T8P6. |
| CleanEx | HS_RBM26. |
| Genevestigator | Q5T8P6. |
Family and domain databases | |
| Gene3D | 1.20.1390.10. 1 hit. 3.30.70.330. 2 hits. |
| InterPro | IPR012677. Nucleotide-bd_a/b_plait. IPR002483. PWI_dom. IPR000504. RRM_dom. IPR000571. Znf_CCCH. [Graphical view] |
| Pfam | PF01480. PWI. 1 hit. [Graphical view] |
| SMART | SM00360. RRM. 1 hit. SM00356. ZnF_C3H1. 1 hit. [Graphical view] |
| PROSITE | PS50102. RRM. 2 hits. PS50103. ZF_C3H1. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | RBM26. human. |
| GenomeRNAi | 64062. |
| NextBio | 65822. |
| PMAP-CutDB | Q5T8P6. |
Entry information
| Entry name | RBM26_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q5T8P6 Secondary accession number(s): B4DZE0 Q9P1G7 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 13 Human chromosome 13: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| SIMILARITY comments Index of protein domains and families |

Clusters with
