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Q5T6V5

- CI064_HUMAN

UniProt

Q5T6V5 - CI064_HUMAN

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Protein
UPF0553 protein C9orf64
Gene
C9orf64
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0553 protein C9orf64
Gene namesi
Name:C9orf64
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 9

Organism-specific databases

HGNCiHGNC:28144. C9orf64.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134865965.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 341341UPF0553 protein C9orf64
PRO_0000089700Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionine1 Publication

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiQ5T6V5.
PaxDbiQ5T6V5.
PRIDEiQ5T6V5.

PTM databases

PhosphoSiteiQ5T6V5.

Expressioni

Gene expression databases

ArrayExpressiQ5T6V5.
BgeeiQ5T6V5.
CleanExiHS_C9orf64.
GenevestigatoriQ5T6V5.

Organism-specific databases

HPAiHPA054903.

Interactioni

Protein-protein interaction databases

BioGridi123994. 2 interactions.
STRINGi9606.ENSP00000365522.

Structurei

3D structure databases

ProteinModelPortaliQ5T6V5.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0553 family.

Phylogenomic databases

eggNOGiNOG241762.
HOGENOMiHOG000010664.
HOVERGENiHBG054936.
InParanoidiQ5T6V5.
OMAiFSFWSEL.
OrthoDBiEOG7CK379.
PhylomeDBiQ5T6V5.
TreeFamiTF105811.

Family and domain databases

InterProiIPR019438. DUF2419.
[Graphical view]
PANTHERiPTHR21314. PTHR21314. 1 hit.
PfamiPF10343. DUF2419. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5T6V5-1 [UniParc]FASTAAdd to Basket

« Hide

MDGLLNPRES SKFIAENSRD VFIDSGGVRR VAELLLAKAA GPELRVEGWK    50
ALHELNPRAA DEAAVNWVFV TDTLNFSFWS EQDEHKCVVR YRGKTYSGYW 100
SLCAAVNRAL DEGIPITSAS YYATVTLDQV RNILRSDTDV SMPLVEERHR 150
ILNETGKILL EKFGGSFLNC VRESENSAQK LMHLVVESFP SYRDVTLFEG 200
KRVSFYKRAQ ILVADTWSVL EGKGDGCFKD ISSITMFADY RLPQVLAHLG 250
ALKYSDDLLK KLLKGEMLSY GDRQEVEIRG CSLWCVELIR DCLLELIEQK 300
GEKPNGEINS ILLDYYLWDY AHDHREDMKG IPFHRIRCIY Y 341
Length:341
Mass (Da):39,029
Last modified:December 21, 2004 - v1
Checksum:i50AF5A7D7197D7B2
GO

Sequence cautioni

The sequence BAC03538.1 differs from that shown. Reason: Erroneous initiation.

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti324 – 3241H → Y in BAC03538. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL354733 Genomic DNA. Translation: CAI16017.1.
CH471089 Genomic DNA. Translation: EAW62673.1.
BC137461 mRNA. Translation: AAI37462.1.
BC137462 mRNA. Translation: AAI37463.1.
BC004407 mRNA. No translation available.
AK090882 mRNA. Translation: BAC03538.1. Different initiation.
CCDSiCCDS6666.2.
RefSeqiNP_115683.3. NM_032307.3.
UniGeneiHs.208914.

Genome annotation databases

EnsembliENST00000376344; ENSP00000365522; ENSG00000165118.
GeneIDi84267.
KEGGihsa:84267.
UCSCiuc004anb.3. human.

Polymorphism databases

DMDMi73620030.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL354733 Genomic DNA. Translation: CAI16017.1 .
CH471089 Genomic DNA. Translation: EAW62673.1 .
BC137461 mRNA. Translation: AAI37462.1 .
BC137462 mRNA. Translation: AAI37463.1 .
BC004407 mRNA. No translation available.
AK090882 mRNA. Translation: BAC03538.1 . Different initiation.
CCDSi CCDS6666.2.
RefSeqi NP_115683.3. NM_032307.3.
UniGenei Hs.208914.

3D structure databases

ProteinModelPortali Q5T6V5.
ModBasei Search...

Protein-protein interaction databases

BioGridi 123994. 2 interactions.
STRINGi 9606.ENSP00000365522.

PTM databases

PhosphoSitei Q5T6V5.

Polymorphism databases

DMDMi 73620030.

Proteomic databases

MaxQBi Q5T6V5.
PaxDbi Q5T6V5.
PRIDEi Q5T6V5.

Protocols and materials databases

DNASUi 84267.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000376344 ; ENSP00000365522 ; ENSG00000165118 .
GeneIDi 84267.
KEGGi hsa:84267.
UCSCi uc004anb.3. human.

Organism-specific databases

CTDi 84267.
GeneCardsi GC09M086553.
HGNCi HGNC:28144. C9orf64.
HPAi HPA054903.
MIMi 611342. gene.
neXtProti NX_Q5T6V5.
PharmGKBi PA134865965.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG241762.
HOGENOMi HOG000010664.
HOVERGENi HBG054936.
InParanoidi Q5T6V5.
OMAi FSFWSEL.
OrthoDBi EOG7CK379.
PhylomeDBi Q5T6V5.
TreeFami TF105811.

Miscellaneous databases

GeneWikii C9orf64.
GenomeRNAii 84267.
NextBioi 73816.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q5T6V5.
Bgeei Q5T6V5.
CleanExi HS_C9orf64.
Genevestigatori Q5T6V5.

Family and domain databases

InterProi IPR019438. DUF2419.
[Graphical view ]
PANTHERi PTHR21314. PTHR21314. 1 hit.
Pfami PF10343. DUF2419. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "DNA sequence and analysis of human chromosome 9."
    Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L.
    , Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beasley H., Beasley O., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burford D., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Chen Y., Clarke G., Clark S.Y., Clee C.M., Clegg S., Collier R.E., Corby N., Crosier M., Cummings A.T., Davies J., Dhami P., Dunn M., Dutta I., Dyer L.W., Earthrowl M.E., Faulkner L., Fleming C.J., Frankish A., Frankland J.A., French L., Fricker D.G., Garner P., Garnett J., Ghori J., Gilbert J.G.R., Glison C., Grafham D.V., Gribble S., Griffiths C., Griffiths-Jones S., Grocock R., Guy J., Hall R.E., Hammond S., Harley J.L., Harrison E.S.I., Hart E.A., Heath P.D., Henderson C.D., Hopkins B.L., Howard P.J., Howden P.J., Huckle E., Johnson C., Johnson D., Joy A.A., Kay M., Keenan S., Kershaw J.K., Kimberley A.M., King A., Knights A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C., Lloyd D.M., Lovell J., Martin S., Mashreghi-Mohammadi M., Matthews L., McLaren S., McLay K.E., McMurray A., Milne S., Nickerson T., Nisbett J., Nordsiek G., Pearce A.V., Peck A.I., Porter K.M., Pandian R., Pelan S., Phillimore B., Povey S., Ramsey Y., Rand V., Scharfe M., Sehra H.K., Shownkeen R., Sims S.K., Skuce C.D., Smith M., Steward C.A., Swarbreck D., Sycamore N., Tester J., Thorpe A., Tracey A., Tromans A., Thomas D.W., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Williams S.A., Wilming L., Wray P.W., Young L., Ashurst J.L., Coulson A., Blocker H., Durbin R.M., Sulston J.E., Hubbard T., Jackson M.J., Bentley D.R., Beck S., Rogers J., Dunham I.
    Nature 429:369-374(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain and Placenta.
  4. Bienvenut W.V., Glen H., Frame M.C.
    Submitted (MAR-2008) to UniProtKB
    Cited for: PROTEIN SEQUENCE OF 31-38; 136-148 AND 163-172, IDENTIFICATION BY MASS SPECTROMETRY.
    Tissue: Osteosarcoma.
  5. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 83-341.
    Tissue: Amygdala.
  6. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  7. Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiCI064_HUMAN
AccessioniPrimary (citable) accession number: Q5T6V5
Secondary accession number(s): B2RPI6, Q8N2B1, Q9BT18
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: December 21, 2004
Last modified: July 9, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Human chromosome 9
    Human chromosome 9: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

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