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Protein

Putative small integral membrane protein 11-like

Gene

SMIM11P1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Names & Taxonomyi

Protein namesi
Recommended name:
Putative small integral membrane protein 11-like
Alternative name(s):
Small integral membrane protein 11 pseudogene 1
Gene namesi
Name:SMIM11P1
Synonyms:C6orf161, FAM165A
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Unplaced

Organism-specific databases

HGNCiHGNC:21400. SMIM11P1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei10 – 3223HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Polymorphism and mutation databases

DMDMi74745137.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 5858Putative small integral membrane protein 11-likePRO_0000341293Add
BLAST

Proteomic databases

PaxDbiQ5T5W8.
PRIDEiQ5T5W8.

PTM databases

PhosphoSiteiQ5T5W8.

Expressioni

Organism-specific databases

HPAiHPA051321.

Structurei

3D structure databases

ProteinModelPortaliQ5T5W8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili29 – 5830Sequence AnalysisAdd
BLAST

Sequence similaritiesi

Belongs to the SMIM11 family.Curated

Keywords - Domaini

Coiled coil, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG71913.
HOGENOMiHOG000060330.
HOVERGENiHBG107872.
InParanoidiQ5T5W8.
OrthoDBiEOG715Q7C.
PhylomeDBiQ5T5W8.
TreeFamiTF330784.

Family and domain databases

InterProiIPR028023. FAM165.
[Graphical view]
PfamiPF14981. FAM165. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5T5W8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNWKVLEHVH LLLYILAAKT LILCLAFAGV KIYQRKRLEA KQQKLEAERK

KQSEKKDN
Length:58
Mass (Da):6,878
Last modified:December 21, 2004 - v1
Checksum:i9FC3B50D696E5854
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL355615 Genomic DNA. Translation: CAI13514.1.

Genome annotation databases

EnsembliENST00000369586; ENSP00000358599; ENSG00000198738.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL355615 Genomic DNA. Translation: CAI13514.1.

3D structure databases

ProteinModelPortaliQ5T5W8.
ModBaseiSearch...
MobiDBiSearch...

PTM databases

PhosphoSiteiQ5T5W8.

Polymorphism and mutation databases

DMDMi74745137.

Proteomic databases

PaxDbiQ5T5W8.
PRIDEiQ5T5W8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000369586; ENSP00000358599; ENSG00000198738.

Organism-specific databases

GeneCardsiGC06M086468.
HGNCiHGNC:21400. SMIM11P1.
HPAiHPA051321.
neXtProtiNX_Q5T5W8.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG71913.
HOGENOMiHOG000060330.
HOVERGENiHBG107872.
InParanoidiQ5T5W8.
OrthoDBiEOG715Q7C.
PhylomeDBiQ5T5W8.
TreeFamiTF330784.

Miscellaneous databases

NextBioi21544809.

Family and domain databases

InterProiIPR028023. FAM165.
[Graphical view]
PfamiPF14981. FAM165. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The DNA sequence and analysis of human chromosome 6."
    Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D.
    , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
    Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiSI11L_HUMAN
AccessioniPrimary (citable) accession number: Q5T5W8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 10, 2008
Last sequence update: December 21, 2004
Last modified: June 24, 2015
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

Could be the product of a pseudogene. There is no evidence of the expression of the gene for this putative protein.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.