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Protein
Submitted name:

PR domain containing 1, with ZNF domain

Gene

PRDM1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PR domain containing 1, with ZNF domainImported
Submitted name:
PR domain containing 1, with ZNF domain, isoform CRA_bImported
Gene namesi
Name:PRDM1Imported
ORF Names:hCG_33515Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Organism-specific databases

EuPathDBiHostDB:ENSG00000057657.14

PTM / Processingi

Proteomic databases

MaxQBiQ5T4E8

Expressioni

Gene expression databases

BgeeiENSG00000057657
ExpressionAtlasiQ5T4E8 baseline and differential

Structurei

3D structure databases

SMRiQ5T4E8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini48 – 165SETInterPro annotationAdd BLAST118
Domaini539 – 566C2H2-typeInterPro annotationAdd BLAST28
Domaini567 – 594C2H2-typeInterPro annotationAdd BLAST28
Domaini595 – 622C2H2-typeInterPro annotationAdd BLAST28
Domaini623 – 650C2H2-typeInterPro annotationAdd BLAST28

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG2461 Eukaryota
ENOG410ZFVU LUCA
HOVERGENiHBG053670

Family and domain databases

InterProiView protein in InterPro
IPR001214 SET_dom
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00856 SET, 1 hit
SMARTiView protein in SMART
SM00317 SET, 1 hit
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF57667 SSF57667, 3 hits
PROSITEiView protein in PROSITE
PS50280 SET, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 4 hits
PS50157 ZINC_FINGER_C2H2_2, 4 hits

Sequencei

Sequence statusi: Complete.

Q5T4E8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKMDMEDADM TLWTEAEFEE KCTYIVNDHP WDSGADGGTS VQAEASLPRN
60 70 80 90 100
LLFKYATNSE EVIGVMSKEY IPKGTRFGPL IGEIYTNDTV PKNANRKYFW
110 120 130 140 150
RIYSRGELHH FIDGFNEEKS NWMRYVNPAH SPREQNLAAC QNGMNIYFYT
160 170 180 190 200
IKPIPANQEL LVWYCRDFAE RLHYPYPGEL TMMNLTQTQS SLKQPSTEKN
210 220 230 240 250
ELCPKNVPKR EYSVKEILKL DSNPSKGKDL YRSNISPLTS EKDLDDFRRR
260 270 280 290 300
GSPEMPFYPR VVYPIRAPLP EDFLKASLAY GIERPTYITR SPIPSSTTPS
310 320 330 340 350
PSARSSPDQS LKSSSPHSSP GNTVSPVGPG SQEHRDSYAY LNASYGTEGL
360 370 380 390 400
GSYPGYAPLP HLPPAFIPSY NAHYPKFLLP PYGMNCNGLS AVSSMNGINN
410 420 430 440 450
FGLFPRLCPV YSNLLGGGSL PHPMLNPTSL PSSLPSDGAR RLLQPEHPRE
460 470 480 490 500
VLVPAPHSAF SFTGAAASMK DKACSPTSGS PTAGTAATAE HVVQPKATSA
510 520 530 540 550
AMAAPSSDEA MNLIKNKRNM TGYKTLPYPL KKQNGKIKYE CNVCAKTFGQ
560 570 580 590 600
LSNLKVHLRV HSGERPFKCQ TCNKGFTQLA HLQKHYLVHT GEKPHECQVC
610 620 630 640 650
HKRFSSTSNL KTHLRLHSGE KPYQCKVCPA KFTQFVHLKL HKRLHTRERP
660 670 680 690 700
HKCSQCHKNY IHLCSLKVHL KGNCAAAPAP GLPLEDLTRI NEEIEKFDIS
710 720 730 740 750
DNADRLEDVE DDISVISVVE KEILAVVRKE KEETGLKVSL QRNMGNGLLS
760 770 780
SGCSLYESSD LPLMKLPPSN PLPLVPVKVK QETVEPMDP
Length:789
Mass (Da):87,991
Last modified:May 10, 2005 - v1
Checksum:i6A1FEBEAD309BC7D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF064715 Genomic DNA Translation: ABK41898.1
CH471051 Genomic DNA Translation: EAW48420.1
RefSeqiXP_011534365.1, XM_011536063.2
XP_016866676.1, XM_017011187.1
UniGeneiHs.436023

Genome annotation databases

GeneIDi639
UCSCiuc063qim.1 human

Similar proteinsi

Entry informationi

Entry nameiQ5T4E8_HUMAN
AccessioniPrimary (citable) accession number: Q5T4E8
Entry historyiIntegrated into UniProtKB/TrEMBL: May 10, 2005
Last sequence update: May 10, 2005
Last modified: May 23, 2018
This is version 132 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

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