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Q5T036

- F120S_HUMAN

UniProt

Q5T036 - F120S_HUMAN

Protein

Putative FAM120A opposite strand protein

Gene

FAM120AOS

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5- Protein uncertaini
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    • History
      Entry version 68 (01 Oct 2014)
      Sequence version 1 (21 Dec 2004)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative FAM120A opposite strand protein
    Gene namesi
    Name:FAM120AOS
    Synonyms:C9orf10OS
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 9

    Organism-specific databases

    HGNCiHGNC:23389. FAM120AOS.

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA134893278.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 256256Putative FAM120A opposite strand proteinPRO_0000337248Add
    BLAST

    Proteomic databases

    PaxDbiQ5T036.
    PRIDEiQ5T036.

    Expressioni

    Gene expression databases

    ArrayExpressiQ5T036.
    BgeeiQ5T036.
    CleanExiHS_FAM120AOS.
    GenevestigatoriQ5T036.

    Organism-specific databases

    HPAiHPA021475.

    Interactioni

    Protein-protein interaction databases

    BioGridi127664. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliQ5T036.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi31 – 11787Arg-richAdd
    BLAST

    Phylogenomic databases

    eggNOGiNOG115919.
    HOGENOMiHOG000112432.
    HOVERGENiHBG101582.
    InParanoidiQ5T036.
    OMAiASEFWSG.
    PhylomeDBiQ5T036.
    TreeFamiTF338583.

    Sequencei

    Sequence statusi: Complete.

    Q5T036-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGKTKDIGDD DTVASEFWSG ALSQPSSVPT RPRTPNRDSW RRAWAARGLH    50
    PRPSILQPGP ARLSRARAGG TRCPQRRHGR ATFCALGRGI GVRRGPGPRP 100
    ARIPGLTLTW KRMSARRMQW AMQTGGRNQT FGGGVPLFWT WLTICCAVWR 150
    SLPCRLTHSC SRAFSSAPLK KTKSSMLPPK QALASAARNL CRGAGCNRQA 200
    VAGQLLPSTW SLHAHGLAKE APILPVKKIS RSCSVNNKVS KKTTKPPTLR 250
    SFLSPI 256
    Length:256
    Mass (Da):27,929
    Last modified:December 21, 2004 - v1
    Checksum:i1BEA53331BA94241
    GO

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti22 – 221L → F.1 Publication
    Corresponds to variant rs1055710 [ dbSNP | Ensembl ].
    VAR_043677
    Natural varianti241 – 2411K → E.1 Publication
    Corresponds to variant rs10821128 [ dbSNP | Ensembl ].
    VAR_043678

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK056096 mRNA. No translation available.
    AL583839, AL353629 Genomic DNA. Translation: CAI12342.1.
    AL353629, AL583839 Genomic DNA. Translation: CAI96107.1.
    CCDSiCCDS6705.1.
    RefSeqiNP_942138.2. NM_198841.2.
    UniGeneiHs.350364.
    Hs.709859.

    Genome annotation databases

    EnsembliENST00000375412; ENSP00000364561; ENSG00000188938.
    GeneIDi158293.
    KEGGihsa:158293.
    UCSCiuc004atu.4. human.

    Keywords - Coding sequence diversityi

    Polymorphism

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK056096 mRNA. No translation available.
    AL583839 , AL353629 Genomic DNA. Translation: CAI12342.1 .
    AL353629 , AL583839 Genomic DNA. Translation: CAI96107.1 .
    CCDSi CCDS6705.1.
    RefSeqi NP_942138.2. NM_198841.2.
    UniGenei Hs.350364.
    Hs.709859.

    3D structure databases

    ProteinModelPortali Q5T036.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 127664. 1 interaction.

    Proteomic databases

    PaxDbi Q5T036.
    PRIDEi Q5T036.

    Protocols and materials databases

    DNASUi 158293.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000375412 ; ENSP00000364561 ; ENSG00000188938 .
    GeneIDi 158293.
    KEGGi hsa:158293.
    UCSCi uc004atu.4. human.

    Organism-specific databases

    CTDi 158293.
    GeneCardsi GC09M096208.
    HGNCi HGNC:23389. FAM120AOS.
    HPAi HPA021475.
    neXtProti NX_Q5T036.
    PharmGKBi PA134893278.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG115919.
    HOGENOMi HOG000112432.
    HOVERGENi HBG101582.
    InParanoidi Q5T036.
    OMAi ASEFWSG.
    PhylomeDBi Q5T036.
    TreeFami TF338583.

    Miscellaneous databases

    ChiTaRSi FAM120AOS. human.
    GenomeRNAii 158293.
    NextBioi 87677.

    Gene expression databases

    ArrayExpressi Q5T036.
    Bgeei Q5T036.
    CleanExi HS_FAM120AOS.
    Genevestigatori Q5T036.

    Family and domain databases

    ProtoNeti Search...

    Publicationsi

    1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
      Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
      , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
      Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS PHE-22 AND GLU-241.
    2. "DNA sequence and analysis of human chromosome 9."
      Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L.
      , Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beasley H., Beasley O., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burford D., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Chen Y., Clarke G., Clark S.Y., Clee C.M., Clegg S., Collier R.E., Corby N., Crosier M., Cummings A.T., Davies J., Dhami P., Dunn M., Dutta I., Dyer L.W., Earthrowl M.E., Faulkner L., Fleming C.J., Frankish A., Frankland J.A., French L., Fricker D.G., Garner P., Garnett J., Ghori J., Gilbert J.G.R., Glison C., Grafham D.V., Gribble S., Griffiths C., Griffiths-Jones S., Grocock R., Guy J., Hall R.E., Hammond S., Harley J.L., Harrison E.S.I., Hart E.A., Heath P.D., Henderson C.D., Hopkins B.L., Howard P.J., Howden P.J., Huckle E., Johnson C., Johnson D., Joy A.A., Kay M., Keenan S., Kershaw J.K., Kimberley A.M., King A., Knights A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C., Lloyd D.M., Lovell J., Martin S., Mashreghi-Mohammadi M., Matthews L., McLaren S., McLay K.E., McMurray A., Milne S., Nickerson T., Nisbett J., Nordsiek G., Pearce A.V., Peck A.I., Porter K.M., Pandian R., Pelan S., Phillimore B., Povey S., Ramsey Y., Rand V., Scharfe M., Sehra H.K., Shownkeen R., Sims S.K., Skuce C.D., Smith M., Steward C.A., Swarbreck D., Sycamore N., Tester J., Thorpe A., Tracey A., Tromans A., Thomas D.W., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Williams S.A., Wilming L., Wray P.W., Young L., Ashurst J.L., Coulson A., Blocker H., Durbin R.M., Sulston J.E., Hubbard T., Jackson M.J., Bentley D.R., Beck S., Rogers J., Dunham I.
      Nature 429:369-374(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiF120S_HUMAN
    AccessioniPrimary (citable) accession number: Q5T036
    Secondary accession number(s): A6NN20
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 20, 2008
    Last sequence update: December 21, 2004
    Last modified: October 1, 2014
    This is version 68 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Caution

    Product of a dubious gene prediction.Curated

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 9
      Human chromosome 9: entries, gene names and cross-references to MIM
    2. Human entries with polymorphisms or disease mutations
      List of human entries with polymorphisms or disease mutations
    3. Human polymorphisms and disease mutations
      Index of human polymorphisms and disease mutations

    External Data

    Dasty 3