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Protein

Putative FAM120A opposite strand protein

Gene

FAM120AOS

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Names & Taxonomyi

Protein namesi
Recommended name:
Putative FAM120A opposite strand protein
Gene namesi
Name:FAM120AOS
Synonyms:C9orf10OS
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 9

Organism-specific databases

HGNCiHGNC:23389. FAM120AOS.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134893278.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 256256Putative FAM120A opposite strand proteinPRO_0000337248Add
BLAST

Proteomic databases

PaxDbiQ5T036.
PRIDEiQ5T036.

Expressioni

Gene expression databases

BgeeiQ5T036.
CleanExiHS_FAM120AOS.
ExpressionAtlasiQ5T036. baseline and differential.
GenevestigatoriQ5T036.

Organism-specific databases

HPAiHPA021475.

Interactioni

Protein-protein interaction databases

BioGridi127664. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ5T036.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi31 – 11787Arg-richAdd
BLAST

Phylogenomic databases

eggNOGiNOG115919.
GeneTreeiENSGT00390000001747.
HOGENOMiHOG000112432.
HOVERGENiHBG101582.
InParanoidiQ5T036.
OMAiASEFWSG.
PhylomeDBiQ5T036.
TreeFamiTF338583.

Sequencei

Sequence statusi: Complete.

Q5T036-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGKTKDIGDD DTVASEFWSG ALSQPSSVPT RPRTPNRDSW RRAWAARGLH
60 70 80 90 100
PRPSILQPGP ARLSRARAGG TRCPQRRHGR ATFCALGRGI GVRRGPGPRP
110 120 130 140 150
ARIPGLTLTW KRMSARRMQW AMQTGGRNQT FGGGVPLFWT WLTICCAVWR
160 170 180 190 200
SLPCRLTHSC SRAFSSAPLK KTKSSMLPPK QALASAARNL CRGAGCNRQA
210 220 230 240 250
VAGQLLPSTW SLHAHGLAKE APILPVKKIS RSCSVNNKVS KKTTKPPTLR

SFLSPI
Length:256
Mass (Da):27,929
Last modified:December 21, 2004 - v1
Checksum:i1BEA53331BA94241
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti22 – 221L → F.1 Publication
Corresponds to variant rs1055710 [ dbSNP | Ensembl ].
VAR_043677
Natural varianti241 – 2411K → E.1 Publication
Corresponds to variant rs10821128 [ dbSNP | Ensembl ].
VAR_043678

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK056096 mRNA. No translation available.
AL583839, AL353629 Genomic DNA. Translation: CAI12342.1.
AL353629, AL583839 Genomic DNA. Translation: CAI96107.1.
CCDSiCCDS6705.1.
RefSeqiNP_942138.2. NM_198841.2.
UniGeneiHs.350364.
Hs.709859.

Genome annotation databases

EnsembliENST00000375412; ENSP00000364561; ENSG00000188938.
GeneIDi158293.
KEGGihsa:158293.
UCSCiuc004atu.4. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK056096 mRNA. No translation available.
AL583839, AL353629 Genomic DNA. Translation: CAI12342.1.
AL353629, AL583839 Genomic DNA. Translation: CAI96107.1.
CCDSiCCDS6705.1.
RefSeqiNP_942138.2. NM_198841.2.
UniGeneiHs.350364.
Hs.709859.

3D structure databases

ProteinModelPortaliQ5T036.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi127664. 1 interaction.

Proteomic databases

PaxDbiQ5T036.
PRIDEiQ5T036.

Protocols and materials databases

DNASUi158293.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000375412; ENSP00000364561; ENSG00000188938.
GeneIDi158293.
KEGGihsa:158293.
UCSCiuc004atu.4. human.

Organism-specific databases

CTDi158293.
GeneCardsiGC09M096208.
HGNCiHGNC:23389. FAM120AOS.
HPAiHPA021475.
neXtProtiNX_Q5T036.
PharmGKBiPA134893278.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG115919.
GeneTreeiENSGT00390000001747.
HOGENOMiHOG000112432.
HOVERGENiHBG101582.
InParanoidiQ5T036.
OMAiASEFWSG.
PhylomeDBiQ5T036.
TreeFamiTF338583.

Miscellaneous databases

ChiTaRSiFAM120AOS. human.
GenomeRNAii158293.
NextBioi87677.

Gene expression databases

BgeeiQ5T036.
CleanExiHS_FAM120AOS.
ExpressionAtlasiQ5T036. baseline and differential.
GenevestigatoriQ5T036.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS PHE-22 AND GLU-241.
  2. "DNA sequence and analysis of human chromosome 9."
    Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L.
    , Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beasley H., Beasley O., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burford D., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Chen Y., Clarke G., Clark S.Y., Clee C.M., Clegg S., Collier R.E., Corby N., Crosier M., Cummings A.T., Davies J., Dhami P., Dunn M., Dutta I., Dyer L.W., Earthrowl M.E., Faulkner L., Fleming C.J., Frankish A., Frankland J.A., French L., Fricker D.G., Garner P., Garnett J., Ghori J., Gilbert J.G.R., Glison C., Grafham D.V., Gribble S., Griffiths C., Griffiths-Jones S., Grocock R., Guy J., Hall R.E., Hammond S., Harley J.L., Harrison E.S.I., Hart E.A., Heath P.D., Henderson C.D., Hopkins B.L., Howard P.J., Howden P.J., Huckle E., Johnson C., Johnson D., Joy A.A., Kay M., Keenan S., Kershaw J.K., Kimberley A.M., King A., Knights A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C., Lloyd D.M., Lovell J., Martin S., Mashreghi-Mohammadi M., Matthews L., McLaren S., McLay K.E., McMurray A., Milne S., Nickerson T., Nisbett J., Nordsiek G., Pearce A.V., Peck A.I., Porter K.M., Pandian R., Pelan S., Phillimore B., Povey S., Ramsey Y., Rand V., Scharfe M., Sehra H.K., Shownkeen R., Sims S.K., Skuce C.D., Smith M., Steward C.A., Swarbreck D., Sycamore N., Tester J., Thorpe A., Tracey A., Tromans A., Thomas D.W., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Williams S.A., Wilming L., Wray P.W., Young L., Ashurst J.L., Coulson A., Blocker H., Durbin R.M., Sulston J.E., Hubbard T., Jackson M.J., Bentley D.R., Beck S., Rogers J., Dunham I.
    Nature 429:369-374(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiF120S_HUMAN
AccessioniPrimary (citable) accession number: Q5T036
Secondary accession number(s): A6NN20
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: December 21, 2004
Last modified: January 7, 2015
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

Product of a dubious gene prediction.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 9
    Human chromosome 9: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.