Clathrin, heavy polypeptide (Hc) - Mus musculus (Mouse)

Contribute

Send feedback

Read comments (?) or add your own

Q5SXR6 (Q5SXR6_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified November 16, 2011. Version 52. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

text xml rdf/xml gff fasta

Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Clathrin, heavy polypeptide (Hc) EMBL CAI25361.1

Submitted name:
Uncharacterized protein Ensembl ENSMUSP00000050220

Gene names

Name:	Cltc MGI 2388633 Ensembl ENSMUSP00000050220
ORF Names:	RP23-366M19.3-006 EMBL CAI25361.1

Organism

Mus musculus (Mouse) EMBL CAI25361.1

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	1679 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	intracellular protein transport Inferred from electronic annotation. Source: InterPro vesicle-mediated transport Inferred from electronic annotation. Source: InterPro
Cellular component	clathrin coat of coated pit Inferred from electronic annotation. Source: InterPro clathrin coat of trans-Golgi network vesicle Inferred from electronic annotation. Source: InterPro mitochondrion Inferred from direct assay. Source: MGI
Molecular function	binding Inferred from electronic annotation. Source: InterPro structural molecule activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q5SXR6 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: 8426B26FACC01071
Show »

FASTA

1,679

191,986

        10         20         30         40         50         60 
MAQILPIRFQ EHLQLQNLGI NPANIGFSTL TMESDKFICI REKVGEQAQV VIIDMNDPSN 

        70         80         90        100        110        120 
PIRRPISADS AIMNPASKVI ALKGIKDSGK TLQIFNIEMK SKMKAHTMTD DVTFWKWISL 

       130        140        150        160        170        180 
NTVALVTDNA VYHWSMEGES QPVKMFDRHS SLAGCQIINY RTDAKQKWLL LTGISAQQNR 

       190        200        210        220        230        240 
VVGAMQLYSV DRKVSQPIEG HAASFAQFKM EGNAEESTLF CFAVRGQAGG KLHIIEVGTP 

       250        260        270        280        290        300 
PTGNQPFPKK AVDVFFPPEA QNDFPVAMQI SEKHDVVFLI TKYGYIHLYD LETGTCIYMN 

       310        320        330        340        350        360 
RISGETIFVT APHEATAGII GVNRKGQVLS VCVEEENIIP YITNVLQNPD LALRMAVRNN 

       370        380        390        400        410        420 
LAGAEELFAR KFNALFAQGN YSEAAKVAAN APKGILRTPD TIRRFQSVPA QPGQTSPLLQ 

       430        440        450        460        470        480 
YFGILLDQGQ LNKYESLELC RPVLQQGRKQ LLEKWLKEDK LECSEELGDL VKSVDPTLAL 

       490        500        510        520        530        540 
SVYLRANVPN KVIQCFAETG QVQKIVLYAK KVGYTPDWIF LLRNVMRISP DQGQQFAQML 

       550        560        570        580        590        600 
VQDEEPLADI TQIVDVFMEY NLIQQCTAFL LDALKNNRPS EGPLQTRLLE MNLMHAPQVA 

       610        620        630        640        650        660 
DAILGNQMFT HYDRAHIAQL CEKAGLLQRA LEHFTDLYDI KRAVVHTHLL NPEWLVNYFG 

       670        680        690        700        710        720 
SLSVEDSLEC LRAMLSANIR QNLQICVQVA SKYHEQLSTQ SLIELFESFK SFEGLFYFLG 

       730        740        750        760        770        780 
SIVNFSQDPD VHFKYIQAAC KTGQIKEVER ICRESNCYDP ERVKNFLKEA KLTDQLPLII 

       790        800        810        820        830        840 
VCDRFDFVHD LVLYLYRNNL QKYIEIYVQK VNPSRLPVVI GGLLDVDCSE DVIKNLILVV 

       850        860        870        880        890        900 
RGQFSTDELV AEVEKRNRLK LLLPWLEARI HEGCEEPATH NALAKIYIDS NNNPERFLRE 

       910        920        930        940        950        960 
NPYYDSRVVG KYCEKRDPHL ACVAYERGQC DLELINVCNE NSLFKSLSRY LVRRKDPELW 

       970        980        990       1000       1010       1020 
GSVLLESNPY RRPLIDQVVQ TALSETQDPE EVSVTVKAFM TADLPNELIE LLEKIVLDNS 

      1030       1040       1050       1060       1070       1080 
VFSEHRNLQN LLILTAIKAD RTRVMEYINR LDNYDAPDIA NIAISNELFE EAFAIFRKFD 

      1090       1100       1110       1120       1130       1140 
VNTSAVQVLI EHIGNLDRAY EFAERCNEPA VWSQLAKAQL QKGMVKEAID SYIKADDPSS 

      1150       1160       1170       1180       1190       1200 
YMEVVQAANA SGNWEELVKY LQMARKKARE SYVETELIFA LAKTNRLAEL EEFINGPNNA 

      1210       1220       1230       1240       1250       1260 
HIQQVGDRCY DEKMYDAAKL LYNNVSNFGR LASTLVHLGE YQAAVDGARK ANSTRTWKEV 

      1270       1280       1290       1300       1310       1320 
CFACVDGKEF RLAQMCGLHI VVHADELEEL INYYQDRGYF EELITMLEAA LGLERAHMGM 

      1330       1340       1350       1360       1370       1380 
FTELAILYSK FKPQKMREHL ELFWSRVNIP KVLRAAEQAH LWAELVFLYD KYEEYDNAII 

      1390       1400       1410       1420       1430       1440 
TMMNHPTDAW KEGQFKDIIT KVANVELYYK AIQFYLEFKP LLLNDLLMVL SPRLDHTRAV 

      1450       1460       1470       1480       1490       1500 
NYFSKVKQLP LVKPYLRSVQ NHNNKSVNES LNNLFITEED YQALRTSIDA YDNFDNISLA 

      1510       1520       1530       1540       1550       1560 
QRLEKHELIE FRRIAAYLFK GNNRWKQSVE LCKKDSLYKD AMQYASESKD TELAEELLQW 

      1570       1580       1590       1600       1610       1620 
FLQEEKRECF GACLFTCYDL LRPDVVLETA WRHNIMDFAM PYFIQVMKEY LTKVDKLDAS 

      1630       1640       1650       1660       1670 
ESLRKEEEQA TETQPIVYGQ PQLMLTAGPS VAVPPQAPFG YGYTAPPYGQ PQPGFGYSM

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Mouse Genome Sequencing Consortium Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed: 19468303] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6 Ensembl ENSMUSP00000050220.
[2]	Johnson C. Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000050220.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AL592222 Genomic DNA. Translation: CAI25361.1.
IPI	IPI00648173.
UniGene	Mm.479526.
3D structure databases
ProteinModelPortal	Q5SXR6.
SMR	Q5SXR6. Positions 1-497, 1081-1634.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q5SXR6. 1 interaction.
STRING	Q5SXR6.
Proteomic databases
PRIDE	Q5SXR6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000060766; ENSMUSP00000050220; ENSMUSG00000047126.
UCSC	uc011ybt.1. mouse.
Organism-specific databases
MGI	MGI:2388633. Cltc.
Phylogenomic databases
HOGENOM	HBG317411.
HOVERGEN	HBG005344.
InParanoid	Q5SXR6.
OMA	GFIHLYE.
PhylomeDB	Q5SXR6.
Gene expression databases
ArrayExpress	Q5SXR6.
Bgee	Q5SXR6.
Genevestigator	Q5SXR6.
Family and domain databases
InterPro	IPR016024. ARM-type_fold. IPR000547. Clathrin_H-chain/VPS_repeat. IPR016025. Clathrin_H-chain_link/propller. IPR015348. Clathrin_H-chain_linker_core. IPR001473. Clathrin_H-chain_propeller_N. IPR022365. Clathrin_H-chain_propeller_rpt. IPR016341. Clathrin_heavy_chain. IPR011990. TPR-like_helical. [Graphical view]
Gene3D	G3DSA:2.130.10.110. Clathrin_H-chain_link/propller. 1 hit. G3DSA:1.25.40.10. TPR-like_helical. 3 hits.
Pfam	PF00637. Clathrin. 7 hits. PF09268. Clathrin-link. 1 hit. PF01394. Clathrin_propel. 3 hits. [Graphical view]
PIRSF	PIRSF002290. Clathrin_H_chain. 1 hit.
SMART	SM00299. CLH. 7 hits. [Graphical view]
SUPFAM	SSF48371. ARM-type_fold. 5 hits. SSF50989. Clathrin_H-chain_propeller_N. 1 hit.
ProtoNet	Search...
Other
SOURCE	Search...

Entry information

Entry name

Q5SXR6_MOUSE

Accession

Primary (citable) accession number: Q5SXR6

Entry history

Integrated into UniProtKB/TrEMBL:	December 21, 2004
Last sequence update:	December 21, 2004
Last modified:	November 16, 2011
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info

Preferred order of sections

Names and origin

Protein attributes

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Gene expression databases

Family and domain databases

Other

Entry information