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Protein
Submitted name:

Transcription factor COE1

Gene

Ebf1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDevelopmental proteinUniRule annotation, DNA-bindingUniRule annotation
Biological processTranscription, Transcription regulationUniRule annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription factor COE1Imported
Gene namesi
Name:Ebf1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:95275 Ebf1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

PTM / Processingi

Proteomic databases

MaxQBiQ5SWK4

Expressioni

Gene expression databases

BgeeiENSMUSG00000057098

Interactioni

GO - Molecular functioni

Structurei

3D structure databases

SMRiQ5SWK4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini262 – 346IPT/TIGInterPro annotationAdd BLAST85

Sequence similaritiesi

Belongs to the COE family.UniRule annotation

Keywords - Domaini

Zinc-fingerUniRule annotation

Phylogenomic databases

eggNOGiKOG3836 Eukaryota
ENOG410XQ9Z LUCA
GeneTreeiENSGT00390000014051
HOGENOMiHOG000092311
HOVERGENiHBG005108
KOiK09103
OMAiHAATPCI
OrthoDBiEOG091G0A9D

Family and domain databases

CDDicd01175 IPT_COE, 1 hit
Gene3Di2.60.40.101 hit
2.60.40.31801 hit
4.10.280.102 hits
InterProiView protein in InterPro
IPR032200 COE_DBD
IPR038173 COE_DBD_sf
IPR032201 COE_HLH
IPR038006 COE_IPT
IPR036638 HLH_DNA-bd_sf
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
IPR002909 IPT_dom
IPR003523 Transcription_factor_COE
IPR018350 Transcription_factor_COE_CS
PANTHERiPTHR10747 PTHR10747, 1 hit
PfamiView protein in Pfam
PF16422 COE1_DBD, 1 hit
PF16423 COE1_HLH, 1 hit
PF01833 TIG, 1 hit
SMARTiView protein in SMART
SM00429 IPT, 1 hit
SUPFAMiSSF81296 SSF81296, 1 hit
PROSITEiView protein in PROSITE
PS01345 COE, 1 hit

Sequencei

Sequence statusi: Complete.

Q5SWK4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFGIQESIQR SGSSMKEEPL GSGMNAVRTW MQGAGVLDAN TAAQSGVGLA
60 70 80 90 100
RAHFEKQPPS NLRKSNFFHF VLALYDRQGQ PVEIERTAFV GFVEKEKEAN
110 120 130 140 150
SEKTNNGIHY RLQLLYSNGI RTEQDFYVRL IDSMTKQAIV YEGQDKNPEM
160 170 180 190 200
CRVLLTHEIM CSRCCDKKSC GNRNETPSDP VIIDRFFLKF FLKCNQNCLK
210 220 230 240 250
NAGNPRDMRR FQVVVSTTVN VDGHVLAVSD NMFVHNNSKH GRRARRLDPS
260 270 280 290 300
EGTPSYLEHA ATPCIKAISP SEGWTTGGAT VIIIGDNFFD GLQVIFGTML
310 320 330 340 350
VWSELITPHA IRVQTPPRHI PGVVEVTLSY KSKQFCKGTP GRFIYTALNE
360 370 380 390 400
PTIDYGFQRL QKVIPRHPGD PERLPKEVIL KRAADLVEAL YGMPHNNQEI
410 420 430 440 450
ILKRAADIAE ALYSVPRNHN QLPALANTSV HAGMMGVNSF SGQLAVNVSE
460 470 480 490 500
ASQATNQGFT RNSSSVSPHG YVPSTTPQQT NYNSVTTSMN GYGSAAMSNL
510 520 530 540 550
GGSPTFLNGS AANSPYAIVP SSPTMASSTS LPSNCSSSSG IFSFSPANMV
560 570 580 590
SAVKQKSAFA PVVRPQTSPP PTCTSTNGNS LQAISGMIVP PM
Length:592
Mass (Da):64,535
Last modified:February 5, 2008 - v1
Checksum:i6A95ED03B5B349DD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL603913 Genomic DNA No translation available.
AL645607 Genomic DNA No translation available.
AL672013 Genomic DNA No translation available.
AL732622 Genomic DNA No translation available.
AK141175 mRNA Translation: BAE24573.1
RefSeqiNP_001277638.1, NM_001290709.1
NP_001277639.1, NM_001290710.1
NP_001277640.1, NM_001290711.1
NP_031923.1, NM_007897.3
UniGeneiMm.439662
Mm.440346

Genome annotation databases

EnsembliENSMUST00000101326; ENSMUSP00000099857; ENSMUSG00000057098
GeneIDi13591
KEGGimmu:13591
UCSCiuc007inm.2 mouse

Similar proteinsi

Entry informationi

Entry nameiQ5SWK4_MOUSE
AccessioniPrimary (citable) accession number: Q5SWK4
Entry historyiIntegrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: April 25, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported