Reviewed, UniProtKB/Swiss-Prot Q5SSK3 (CQ042_MOUSE)

Names and origin

Protein names	Recommended name:     UPF0629 protein C17orf42 homolog
Organism	Mus musculus (Mouse)
Taxonomic identifier	10090 [NCBI]
Taxonomic lineage	Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus

Protein attributes

Sequence length	364 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Belongs to the UPF0629 family.

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 364	364	UPF0629 protein C17orf42 homolog		PRO_0000344990

Sequences

	Sequence		Length	Mass (Da)
	Q5SSK3-1 [UniParc]. Last modified December 21, 2004. Version 1. Checksum: 37A54216F0E53DF4	FASTA	364	41,874
	10 20 30 40 50 60 MAWRTNLACL IKAGGRRWFP VPEYSSLPPV LNNTCSVRKS TAPEKRVASV AACDTDGKEP 70 80 90 100 110 120 GNPLDRLFSL EQQASILQVL NTASDKELEA FRLLRGRKSV NIVEHRKKFG PFQRLENLID 130 140 150 160 170 180 VPLIQYKTAV EVCNSILCPE NRRRKKSQEK WLLRKFIKPG VEQERLKAVK SIVSIVFGTR 190 200 210 220 230 240 RIAWAHLDRR PTVLDWQQTE CWKLTNKTYP TSFYLEEISS VISKIPKADL YILEKSGLSI 250 260 270 280 290 300 QNTSLLPILL HFLITEAMLY ALLNKTFAED GQHRVLSINR NAVGKHFDLM IGDTRTSGRE 310 320 330 340 350 360 LVKQFLSESV LKERPRVFFP QDLLVQYRQK VVKSSYRIEE LYDSLLQAVA FYELVFGKDS ELKC

References

[1]	"The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y. Science 309:1559-1563(2005) [PubMed: 16141072] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: C57BL/6J. Tissue: Stomach.
[2]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed: 19468303] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AK146639 mRNA. Translation: BAE27323.1. AL663057 Genomic DNA. Translation: CAI26035.1.
IPI	IPI00404845.
RefSeq	NP_899098.2.
UniGene	Mm.18466
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q5SSK3.
Proteomic databases
PRIDE	Q5SSK3.
Genome annotation databases
Ensembl	ENSMUST00000050207; ENSMUSP00000059304; ENSMUSG00000046909; Mus musculus. [Genome view]
GeneID	68550.
KEGG	mmu:68550.
NMPDR	fig|10090.3.peg.24845.
UCSC	uc007klj.1. mouse.
Organism-specific databases
MGI	MGI:1915800. 1110002N22Rik.
Phylogenomic databases
HOGENOM	Q5SSK3.
HOVERGEN	Q5SSK3.
OMA	MNRNAVG
OrthoDB	EOG93R668
Gene expression databases
ArrayExpress	Q5SSK3.
Bgee	Q5SSK3.
Genevestigator	Q5SSK3.
Family and domain databases
ProtoNet	Search...
Other Resources
NextBio	327432.

Entry information

Entry name

CQ042_MOUSE

Accession

Primary (citable) accession number: Q5SSK3

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 22, 2008
Last sequence update:	December 21, 2004
Last modified:	November 24, 2009
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HPI (Human Proteome Initiative)