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Protein

ATP-binding cassette sub-family A member 13

Gene

Abca13

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi3843 – 38508ATP 1PROSITE-ProRule annotation
Nucleotide bindingi4729 – 47368ATP 2PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-binding cassette sub-family A member 13
Gene namesi
Name:Abca13
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:2388707. Abca13.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei23 – 4321HelicalSequence analysisAdd
BLAST
Transmembranei3536 – 355621HelicalSequence analysisAdd
BLAST
Transmembranei3590 – 361021HelicalSequence analysisAdd
BLAST
Transmembranei3616 – 363621HelicalSequence analysisAdd
BLAST
Transmembranei3647 – 366721HelicalSequence analysisAdd
BLAST
Transmembranei3677 – 369721HelicalSequence analysisAdd
BLAST
Transmembranei3720 – 374021HelicalSequence analysisAdd
BLAST
Transmembranei4206 – 422621HelicalSequence analysisAdd
BLAST
Transmembranei4432 – 445221HelicalSequence analysisAdd
BLAST
Transmembranei4478 – 449821HelicalSequence analysisAdd
BLAST
Transmembranei4510 – 453021HelicalSequence analysisAdd
BLAST
Transmembranei4540 – 456021HelicalSequence analysisAdd
BLAST
Transmembranei4581 – 460121HelicalSequence analysisAdd
BLAST
Transmembranei4625 – 464521HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 50345034ATP-binding cassette sub-family A member 13PRO_0000253574Add
BLAST

Proteomic databases

PaxDbiQ5SSE9.
PeptideAtlasiQ5SSE9.
PRIDEiQ5SSE9.

PTM databases

iPTMnetiQ5SSE9.
PhosphoSiteiQ5SSE9.

Expressioni

Tissue specificityi

Ubiquitously expressed. May be primarily expressed in kidney.2 Publications

Gene expression databases

BgeeiENSMUSG00000004668.
ExpressionAtlasiQ5SSE9. baseline and differential.
GenevisibleiQ5SSE9. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000040465.

Structurei

3D structure databases

ProteinModelPortaliQ5SSE9.
SMRiQ5SSE9. Positions 3765-4069, 4707-4969.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3810 – 4042233ABC transporter 1PROSITE-ProRule annotationAdd
BLAST
Domaini4692 – 4931240ABC transporter 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated
Contains 2 ABC transporter domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0059. Eukaryota.
COG1131. LUCA.
GeneTreeiENSGT00760000118965.
HOGENOMiHOG000033760.
HOVERGENiHBG080808.
InParanoidiQ5SSE9.
KOiK05647.
OMAiSWLQMWT.
OrthoDBiEOG091G0014.
PhylomeDBiQ5SSE9.
TreeFamiTF105191.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR026082. ABC_A.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PANTHERiPTHR19229. PTHR19229. 3 hits.
PfamiPF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q5SSE9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MGHAGRQFQA LLWKNWICRL RHPVLSLAEF FWPCILFMIL TVLRFQEPPR
60 70 80 90 100
HRENCYLQAR DLPSRGVLPF VQGLLCNTGS SCRNISFESS MDHHFRLSRF
110 120 130 140 150
QTASDDRKVS SLAFLNEIQD LAEDIFETMD KAKNLQKLWL KRSETPGSSY
160 170 180 190 200
GSGFLTMDLN KTEDVISKLE SLHQQPHIWD FLHSLPRLYM SSAHLEDSMG
210 220 230 240 250
AVTHFLQAGL NSLASLGDLD WLPLHQTIPQ VSRHVLNVTI STLRFLQQHS
260 270 280 290 300
AVVNETIYHL SLKNIVWDPQ KVQSDLKSQF GFNDFQMQHI LNYSAKLEEI
310 320 330 340 350
PTHSFLERMV CSILSNTSED EAESKGYRAD CHPKWSAVKN YIIHAVSWLK
360 370 380 390 400
LYGQVFDQWQ QGSLLQSLLA GASHSLAALR EQFKQQSESW KVVEALHTAL
410 420 430 440 450
LILNDSLAAD VPRDYHLFPQ IFQHLSKLQH ALSDLSPWPA LKRLLLLDTV
460 470 480 490 500
LRNMIAQDLR FVQEFLSYLE RSAKDFIPAG SEGWRLEKDV LFQGLNQLLT
510 520 530 540 550
KNASALCLNG HLSQEAALPT GNSSIWRSVW GVLCHTLFFN ETSVLNELLR
560 570 580 590 600
AVKDAGHSLQ AVIAGHTNGS VSEHGGHFGW QDLGTQLSEI SLTCSRVFQL
610 620 630 640 650
PRADTSPENS FSPGGCESQL VSIVVSHILE DVQMSTQKKS YWKILSKIVR
660 670 680 690 700
KTCELARYVN MNGSLQNSGL ISFSEDSPCY TQDMNWKVII DNYFVFFNNF
710 720 730 740 750
KKSPITSITT AFNFTKHLLV VDQKLHTLEN GQMNILLSFV EFVEKLLSNP
760 770 780 790 800
SGSFPAPEFD NLSSLTELVF NATVSWLTHL KRLKADSHDA APQELLEFDH
810 820 830 840 850
LVTEKIQRLK NHWMKKGSKN ILNFLELILL EMNSELQEFR LNGIPQEERT
860 870 880 890 900
NIEGFSTLVN FSVAEYEKIL CKRFTFSQLF HSYWPKSPAI NADFIHLSET
910 920 930 940 950
IIQSLCGLSF LTQEQVSIAL NTVSALQNTS ELFSALSEPQ KQELDNFLTH
960 970 980 990 1000
VYINVFKDKN IALFLQTYSS FYRYIHKFFN IQNREPLIAY FTQISRHILD
1010 1020 1030 1040 1050
LIKQFNIQNI REALSFLSET TEALGMISEV SHCQQLLSIF NFLELQAWSL
1060 1070 1080 1090 1100
MARGGPAEAV IHASLTGLKQ LFAADEGFRV SLLQYVTQCF NGSAATLVAS
1110 1120 1130 1140 1150
ECFIQENATI SSVNYSGNEG SSLPFPWTQF FSNLSVNGSA ISEFTAIHCT
1160 1170 1180 1190 1200
LSWIQTWAEI WRSIAQIFKL ELSIFTPLHV GITQLLDDLG NYGNISKDCQ
1210 1220 1230 1240 1250
GIVPTYLTAR LILNLFRNIT QENNFHDWDG LQDLRDLWVA FGNELTTVQS
1260 1270 1280 1290 1300
LNLDQVEKTF ITMETSLHQL KTFPMKINAS REFLYSLFDV FIELSKASDY
1310 1320 1330 1340 1350
VDRNVELINN FLSDDLPDHQ AKFASIIKEL KETILFLRHV SQGRTLSACA
1360 1370 1380 1390 1400
DIFQRLTELI FEDSLLLVNT SNKPEHILAM LSSMFSSKNT SSSLEGCITW
1410 1420 1430 1440 1450
IDIINHLCIM YNSSSLPSHS YNILGSFKDM GDKMSSALNI LTWMLNKKRP
1460 1470 1480 1490 1500
ICPWNESNIN CVNIYLKDIT DFLNIIVTTG LEKENVPNVE ILLSLFNDST
1510 1520 1530 1540 1550
KQVDMIITNL TEDLNVASQS NWKHFKDLLL RPTEMSDDIP DQFQNIWQHI
1560 1570 1580 1590 1600
IALGKEMQKL LKGIFHSVLG NNFSSNTETM FSVFSTSPKE GDISHLGKSI
1610 1620 1630 1640 1650
YNLANYFALN LTHNLQNSSE VFPHEILKAV DLSIQLTRDV FNFLMPAVHF
1660 1670 1680 1690 1700
NIPQNSDHAQ TLKKVTSLMQ SLKKADIELL VGQLGENSEI LMSFFKNLSR
1710 1720 1730 1740 1750
SGIDNLGVNM LVGLVEKFVD SSHSWSVSHL LRLSRLLPKD VVDTVLDVYY
1760 1770 1780 1790 1800
ALPHIVGLLR RIVDKNITES LRDVYNFTLL HGITMFKITK EDFADVVKTL
1810 1820 1830 1840 1850
LDAVELVSDE PAIVPEALMC LTRVWCANYT TFRLEKNPKV EDCNIQRHMP
1860 1870 1880 1890 1900
SSFFHMVTSL LDLLHLPPPS DSQCIGEKYA VEITRRLACA VHDLADWNSI
1910 1920 1930 1940 1950
LSELLEIFHV KNLLVKTLQG FWHKVLLFMS SSGIQGNGSI PELCPTSTIK
1960 1970 1980 1990 2000
QGALQIIEKL KYVNFTKFSL GETILDRLGN LDRILSLTKG TEKSVQNNIY
2010 2020 2030 2040 2050
LNLERLFKLI SATWTLRNST HYLLSPITNF LNGNYTGWSL FKNNRTSSNI
2060 2070 2080 2090 2100
EELWLDFKQI PKDLTSNWSL GQLLSDINKN IQGAGLQNTT VQLPQLLELL
2110 2120 2130 2140 2150
DSSPLKTSEI IEGFLFLIKP WLREYENGDF FRFIQSLLNA VASGNSTDVS
2160 2170 2180 2190 2200
RLARDFTMYL GYLRNQSREG NFDVGFFSHM LDQEHLTDLP VVQRLLESIV
2210 2220 2230 2240 2250
MNSVSSFAAL SQETPPSFSG TNLQIADLMN LILKHAQSKN HAEAEGSTED
2260 2270 2280 2290 2300
FLKQLPETFF SSVINGLHSD VTAEVSFVPR DKILEILKLD PFLTWMNKNP
2310 2320 2330 2340 2350
LMNIFSGLKT LYYLIKSSFS LDNRELSGVL KDLSHTHPWE TTVKTDAEGH
2360 2370 2380 2390 2400
LDFFSVVTQF LSQVNSSEDL SKFNQNLRSV LYLVQESSTE MATIIDTVLH
2410 2420 2430 2440 2450
STSGACYSPY PMLQHSTVAK LSDLFSDVNS SFPLRSREIL ESTMRLFGTI
2460 2470 2480 2490 2500
SQVGEESHVL ESALEIFRTL TMLVNSTVEL GHLASTADSM VRLLNLAKIV
2510 2520 2530 2540 2550
SRKMATMLGT LSISSTEDSG KFLDTLYSFM LQSVPHHVKQ ITTLKKGDPF
2560 2570 2580 2590 2600
IVEKTKDLLI PFLDLAFGMI GVTPNVSQDS DVFSMPFSIL SYINQSRDFS
2610 2620 2630 2640 2650
ETLEGMAENL ISIKISLRDW EHFVAMIKNR TQNFSIDAAD LWEEILGCLV
2660 2670 2680 2690 2700
PISNITTQMD FLKLYELSST SHPQVPKQER THDVIRYLDG MLTDNGTERE
2710 2720 2730 2740 2750
TFLKMVIDLT LQALWNGLKE DNWDIFNLLL AFAQHPNDLL KAIESVVAVS
2760 2770 2780 2790 2800
SGIHSDYPDD FNQDSFSDLS LIQNTTRYQL AKAVLIGLGK AGFSREGLPL
2810 2820 2830 2840 2850
NNTQWTHFTR TLFHPDYNSF PNSTPHQNVT SAKDGRTKDE MMVILHGSEP
2860 2870 2880 2890 2900
MPYLQRFLKA LFVSIEHWQE VPQAEQSVFE MCQVFQQLQK PMKTVKMLQR
2910 2920 2930 2940 2950
VEMMALRVLI IFAENPSLTK DILCAALSCK QGAMRHLILA ALQGVTLVHR
2960 2970 2980 2990 3000
HYQEIGKIWF SPDQLDCERL SRNLSSALEG FKSILDNASS HRCTCQPLVG
3010 3020 3030 3040 3050
VVQQHIRRLT KSLEEVWMSK IPAMTFLSNF TVTEDVKIKD LMRNITKFTE
3060 3070 3080 3090 3100
DLRSFFHISE ETIHSILEAN ISHSKVLSSV LTIALSGKCD EEILHLLLTF
3110 3120 3130 3140 3150
PESEKSWFVT RELCSLPGSQ VFSLLVMMGQ NLNLRNLIYK TLIPSEANGL
3160 3170 3180 3190 3200
LKSLLDVVAS LSSILARAQH ALEYLPEFLH TFKITALLDM PDFQQVSSKG
3210 3220 3230 3240 3250
QTRSSAFASF QSVMKLLCKD QESFLSNSNM FINLPRVNEL LEDNKEKFNI
3260 3270 3280 3290 3300
PHDSTPFCLK LYQEILQSPN GALVWSFLKP VLHGKILYTP NSPEINEVIQ
3310 3320 3330 3340 3350
KANYTFYFVD KIKVLSETFL KISKLFQGSG NGQMFNQLQD ALRNKFIRNF
3360 3370 3380 3390 3400
VESQLHIDMD KLTEDLQTYG RMLDKMFNHV EAGHFRFLGG MLANLSSCVV
3410 3420 3430 3440 3450
LDRFQAVETV DTLETKAHEL MQQNSFLASI IFNSSLRHRH IRSAPHKLPP
3460 3470 3480 3490 3500
HVTYTIRTNV LYSMRTDMIK NPSWKFHPQN LPAGGFKYNY IFVPLQDMIE
3510 3520 3530 3540 3550
RAIIVVQTGQ ESLEPTTQAQ AAPYPCHTSD LFLNNVGFFF PLIMMLTWMV
3560 3570 3580 3590 3600
AVASMVRKLV YEREIQIEEY MRMMGLHPTI HFLSWFLENM ATLALSSAAL
3610 3620 3630 3640 3650
AVILKMSGIF MHSDAFIIFL YLLDFGVSAV MMSYFLSVFF NQANTAALCT
3660 3670 3680 3690 3700
SLGYMISFLP YVVLLVLHNQ LSFAIQTLLC LLSTTAFGQG VFFITFLEGQ
3710 3720 3730 3740 3750
EEGIQWGNMY RAPEPGGMTF GWVCWMILFD AILYFLGGWY FSNLVPGTFG
3760 3770 3780 3790 3800
LGKPWYFPFT ASYWKSICGL MERRRCSLSS GLFFFNEDFG NKGLSQQNGP
3810 3820 3830 3840 3850
GEMEGGNPGV ALISVTKEYE DHKVAVQELT LTFHRDQITA LLGTNGAGKT
3860 3870 3880 3890 3900
TIISMLMGLF PPTSGTITIN GKNLQTDLSK VREELGVCPQ QDVLLDNLTV
3910 3920 3930 3940 3950
REHLMLFASI KAPWWTTKEL QQQVNKTLDE VELTQHQHKP AGVLSGGMKR
3960 3970 3980 3990 4000
KLSIGIAFMG MSKTVVLDEP SSGVDPCSRR SLWDILLKYR EGRTIIFTTH
4010 4020 4030 4040 4050
HLDEAEMLSD HVAVLQQGRL RCYAPPADLK ETYGQGLTLT LSKQPSILET
4060 4070 4080 4090 4100
QEPKDVARVT SLIQIYIPQA FLKDSCGGEL TYTIPKDADR TCFKGLCQAL
4110 4120 4130 4140 4150
DQNLQHLHLT GYGISDTTLE EVFLMLLQDT NKKSYITPDN KVEPQNERPV
4160 4170 4180 4190 4200
GPLSPHNVSP LSTPPEGALP EPIGGCQLLL GQAVALLRKR LLHTLRAWKS
4210 4220 4230 4240 4250
TTSDLLLPVL FVALAMGLFM VQPLAITYPP LKLTPGHYET AETYFFSSGN
4260 4270 4280 4290 4300
HGPDLTHVLL RKFRDQDPVC ADAFRMNSSS WHRDPYSGPE SQDSCGCLKC
4310 4320 4330 4340 4350
PNKSAGAPSL TNCLGHTLLN LSGYDVEEYL LVPSAKPRLG GWSFGGQIPN
4360 4370 4380 4390 4400
DAEDVKTNTS KPRTLAKVWY NQKGFHSLPS YLNHLNNLIL WHHLPANAVD
4410 4420 4430 4440 4450
WRQYGITLYS HPYGGALLNE DRILESIRQC GVALCIVLGF SILSASIGSS
4460 4470 4480 4490 4500
VVRDRVTGAK RLQHISGLGH RTYWLINFLY DMLFYLVSVC LCVAVIGAFQ
4510 4520 4530 4540 4550
LTAFTFRENL AATALLLALF GYAMIPWMYL MSRIFSSSDV AFISYISLNF
4560 4570 4580 4590 4600
IFGLCTMLMT TMPRLLAIIS KAQNLQKIYN VLKWAFTIFP QFCLGQGLIE
4610 4620 4630 4640 4650
LCYNQIKYDL THNFGIDSYV SPFEMNFLGW IFVELTLQGT FLLLLRLMLH
4660 4670 4680 4690 4700
GDLLRWPRDH SVLQDIVKPA KDIDVETEQM RVLEGRTGGD MMVLCNLSKS
4710 4720 4730 4740 4750
YRSVFGGKTT AVHGISLGIP RGECFGLLGV NGAGKSTTFK ILNGETPPSS
4760 4770 4780 4790 4800
GYTVIRTPQG DMVDLASAGK AGILIGYCPQ QDALDELLTG WEHLQYYCRL
4810 4820 4830 4840 4850
RGIPKQYIPE VAADLVRRLH LESHVDKPVA TYSGGTRRKL STALALVGKP
4860 4870 4880 4890 4900
DILLLDEPSS GMDPCSKRYL WQTITQEVRD GCAAVLTSHS MEECEALCTR
4910 4920 4930 4940 4950
LAIMVDGSFR CLGPPQHIKN RFGDGYTVKV WLHKEGSQPS AVSDCLKLHF
4960 4970 4980 4990 5000
PGIQFKGQRL NLLEYHVQKS WECLADLFKV LENNKSLLNI EHYSISQTTL
5010 5020 5030
EQVFVNFATE QLQTPCFPVD SPSTDAQHPC YTRI
Length:5,034
Mass (Da):568,897
Last modified:December 21, 2004 - v1
Checksum:i23D41658044635AF
GO
Isoform 2 (identifier: Q5SSE9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     3340-3342: DAL → DGC
     3343-5034: Missing.

Show »
Length:3,342
Mass (Da):379,247
Checksum:iC55D3C7CDB7D7B5F
GO
Isoform 3 (identifier: Q5SSE9-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     97-107: LSRFQTASDDR → YEKYKHPFQNS
     108-5034: Missing.

Note: No experimental confirmation available.
Show »
Length:107
Mass (Da):12,753
Checksum:i71D44E9CBDF79BA8
GO

Sequence cautioni

The sequence AAO18684 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti3048 – 30481F → L in AAO18684 (PubMed:12706902).Curated
Sequence conflicti3099 – 30991T → M in AAO18684 (PubMed:12706902).Curated
Sequence conflicti3166 – 31661A → T in AAO18684 (PubMed:12706902).Curated
Sequence conflicti3199 – 31991K → N in AAO18684 (PubMed:12706902).Curated
Sequence conflicti3238 – 32381N → T in AAO18684 (PubMed:12706902).Curated
Sequence conflicti3368 – 33681T → I in AAO18684 (PubMed:12706902).Curated
Sequence conflicti3917 – 39171T → K in AAO18684 (PubMed:12706902).Curated
Sequence conflicti4024 – 40241A → T in AAO18684 (PubMed:12706902).Curated
Sequence conflicti4076 – 40761C → S in AAO18684 (PubMed:12706902).Curated
Sequence conflicti4490 – 44901C → W in AAO18684 (PubMed:12706902).Curated
Sequence conflicti4495 – 44951V → G in AAO18684 (PubMed:12706902).Curated
Sequence conflicti4498 – 44981A → T in AAO18684 (PubMed:12706902).Curated
Sequence conflicti4517 – 45171L → V in AAO18684 (PubMed:12706902).Curated
Sequence conflicti4649 – 46491L → V in AAO18684 (PubMed:12706902).Curated
Sequence conflicti4670 – 46701A → V in AAO18684 (PubMed:12706902).Curated
Sequence conflicti4700 – 47001S → R in AAO18684 (PubMed:12706902).Curated
Sequence conflicti4798 – 47981C → G in BAC31829 (PubMed:16141072).Curated
Sequence conflicti4885 – 48851V → M in AAO18684 (PubMed:12706902).Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei97 – 10711LSRFQTASDDR → YEKYKHPFQNS in isoform 3. 1 PublicationVSP_021071Add
BLAST
Alternative sequencei108 – 50344927Missing in isoform 3. 1 PublicationVSP_021072Add
BLAST
Alternative sequencei3340 – 33423DAL → DGC in isoform 2. CuratedVSP_021073
Alternative sequencei3343 – 50341692Missing in isoform 2. CuratedVSP_021074Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK036546 mRNA. Translation: BAC29471.1.
AK044229 mRNA. Translation: BAC31829.1.
AL645994
, AL663110, AL663114, AL669853 Genomic DNA. Translation: CAI23929.1.
AL669853
, AL645994, AL663110, AL663114 Genomic DNA. Translation: CAI24458.1.
AL663110
, AL645994, AL663114, AL669853 Genomic DNA. Translation: CAI24652.1.
AL663114
, AL645994, AL663110, AL669853 Genomic DNA. Translation: CAI24813.1.
AY160971 mRNA. Translation: AAO18684.1. Different initiation.
CCDSiCCDS36110.1. [Q5SSE9-1]
RefSeqiNP_839990.2. NM_178259.3. [Q5SSE9-1]
UniGeneiMm.39270.

Genome annotation databases

EnsembliENSMUST00000042740; ENSMUSP00000040465; ENSMUSG00000004668. [Q5SSE9-1]
GeneIDi268379.
KEGGimmu:268379.
UCSCiuc007hzz.1. mouse. [Q5SSE9-3]
uc007iaa.1. mouse. [Q5SSE9-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK036546 mRNA. Translation: BAC29471.1.
AK044229 mRNA. Translation: BAC31829.1.
AL645994
, AL663110, AL663114, AL669853 Genomic DNA. Translation: CAI23929.1.
AL669853
, AL645994, AL663110, AL663114 Genomic DNA. Translation: CAI24458.1.
AL663110
, AL645994, AL663114, AL669853 Genomic DNA. Translation: CAI24652.1.
AL663114
, AL645994, AL663110, AL669853 Genomic DNA. Translation: CAI24813.1.
AY160971 mRNA. Translation: AAO18684.1. Different initiation.
CCDSiCCDS36110.1. [Q5SSE9-1]
RefSeqiNP_839990.2. NM_178259.3. [Q5SSE9-1]
UniGeneiMm.39270.

3D structure databases

ProteinModelPortaliQ5SSE9.
SMRiQ5SSE9. Positions 3765-4069, 4707-4969.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000040465.

PTM databases

iPTMnetiQ5SSE9.
PhosphoSiteiQ5SSE9.

Proteomic databases

PaxDbiQ5SSE9.
PeptideAtlasiQ5SSE9.
PRIDEiQ5SSE9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000042740; ENSMUSP00000040465; ENSMUSG00000004668. [Q5SSE9-1]
GeneIDi268379.
KEGGimmu:268379.
UCSCiuc007hzz.1. mouse. [Q5SSE9-3]
uc007iaa.1. mouse. [Q5SSE9-1]

Organism-specific databases

CTDi154664.
MGIiMGI:2388707. Abca13.

Phylogenomic databases

eggNOGiKOG0059. Eukaryota.
COG1131. LUCA.
GeneTreeiENSGT00760000118965.
HOGENOMiHOG000033760.
HOVERGENiHBG080808.
InParanoidiQ5SSE9.
KOiK05647.
OMAiSWLQMWT.
OrthoDBiEOG091G0014.
PhylomeDBiQ5SSE9.
TreeFamiTF105191.

Miscellaneous databases

ChiTaRSiAbca13. mouse.
PROiQ5SSE9.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000004668.
ExpressionAtlasiQ5SSE9. baseline and differential.
GenevisibleiQ5SSE9. MM.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR026082. ABC_A.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PANTHERiPTHR19229. PTHR19229. 3 hits.
PfamiPF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiABCAD_MOUSE
AccessioniPrimary (citable) accession number: Q5SSE9
Secondary accession number(s): Q80T20, Q8BHZ2, Q8CB91
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 17, 2006
Last sequence update: December 21, 2004
Last modified: September 7, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.