Q5SRE5 (NU188_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
April 3, 2013.
Version 75.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Nucleoporin NUP188 homolog Short name=hNup188 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1749 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | May function as a component of the nuclear pore complex (NPC). |
| Subcellular location | Nucleus › nuclear pore complex Probable. |
| Sequence caution | The sequence CAD97835.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q5SRE5-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q5SRE5-2) The sequence of this isoform differs from the canonical sequence as follows: 116-226: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1749 | 1749 | Nucleoporin NUP188 homolog | PRO_0000299172 | |||||
Amino acid modifications | |||||||||
| Modified residue | 1709 | 1 | Phosphoserine Ref.10 | ||||||
| Modified residue | 1717 | 1 | Phosphoserine Ref.8 Ref.9 Ref.10 Ref.12 Ref.13 Ref.15 | ||||||
Natural variations | |||||||||
| Alternative sequence | 116 – 226 | 111 | Missing in isoform 2. | VSP_027585 | |||||
| Natural variant | 1419 | 1 | A → V. Corresponds to variant rs17433024 [ dbSNP | Ensembl ]. | VAR_034792 | |||||
| Natural variant | 1587 | 1 | N → K. Corresponds to variant rs12350674 [ dbSNP | Ensembl ]. | VAR_034793 | |||||
Experimental info | |||||||||
| Sequence conflict | 773 | 1 | A → T in CAD97835. Ref.1 | ||||||
| Sequence conflict | 995 | 1 | R → W in AAH40352. Ref.5 | ||||||
| Sequence conflict | 1196 | 1 | Q → R in CAD97835. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Endometrium. |
| [2] | "DNA sequence and analysis of human chromosome 9." Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L. Dunham I.Nature 429:369-374(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1." Nagase T., Seki N., Ishikawa K., Tanaka A., Nomura N. DNA Res. 3:17-24(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 5-1749 (ISOFORM 1). Tissue: Bone marrow. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 457-1749. Tissue: Ovary and Uterus. |
| [6] | "Identification of a new vertebrate nucleoporin, Nup188, with the use of a novel organelle trap assay." Miller B.R., Powers M., Park M., Fischer W., Forbes D.J. Mol. Biol. Cell 11:3381-3396(2000) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION AS NUCLEOPORIN. |
| [7] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [8] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1717, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1717, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1709 AND SER-1717, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [12] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1717, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [13] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1717, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [15] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1717, MASS SPECTROMETRY. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | BX537774 mRNA. Translation: CAD97835.1. Different initiation. AL672142, AL592211 Genomic DNA. Translation: CAI10845.1. AL592211, AL672142 Genomic DNA. Translation: CAI12368.1. CH471090 Genomic DNA. Translation: EAW87850.1. D79991 mRNA. Translation: BAA11486.1. BC040352 mRNA. Translation: AAH40352.1. BC111045 mRNA. Translation: AAI11046.1. |
| IPI | IPI00385001. IPI00477040. |
| RefSeq | NP_056169.1. NM_015354.2. |
| UniGene | Hs.308340. |
3D structure databases | |
| ProteinModelPortal | Q5SRE5. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q5SRE5. 7 interactions. |
| STRING | 9606.ENSP00000361658. |
PTM databases | |
| PhosphoSite | Q5SRE5. |
Polymorphism databases | |
| DMDM | 74743623. |
Proteomic databases | |
| PaxDb | Q5SRE5. |
| PRIDE | Q5SRE5. |
Protocols and materials databases | |
| DNASU | 23511. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000372577; ENSP00000361658; ENSG00000095319. |
| GeneID | 23511. |
| KEGG | hsa:23511. |
| UCSC | uc004bws.1. human. |
Organism-specific databases | |
| CTD | 23511. |
| GeneCards | GC09P131709. |
| HGNC | HGNC:17859. NUP188. |
| neXtProt | NX_Q5SRE5. |
| PharmGKB | PA134908952. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG280768. |
| HOGENOM | HOG000113876. |
| HOVERGEN | HBG055598. |
| InParanoid | Q5SRE5. |
| KO | K14311. |
| OMA | KELCEVD. |
| OrthoDB | EOG4HDSSM. |
Enzyme and pathway databases | |
| Reactome | REACT_111217. Metabolism. REACT_116125. Disease. REACT_15518. Transmembrane transport of small molecules. REACT_6900. Immune System. |
Gene expression databases | |
| ArrayExpress | Q5SRE5. |
| Bgee | Q5SRE5. |
| CleanEx | HS_NUP188. |
| Genevestigator | Q5SRE5. |
Family and domain databases | |
| InterPro | IPR018864. Nucleoporin_Nup188. [Graphical view] |
| Pfam | PF10487. Nup188. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | NUP188. human. |
| GenomeRNAi | 23511. |
| NextBio | 45927. |
Entry information
| Entry name | NU188_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q5SRE5 Secondary accession number(s): Q14675 Q8IWF1 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 9 Human chromosome 9: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |

Clusters with
