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Q5SMK6

- P2C54_ORYSJ

UniProt

Q5SMK6 - P2C54_ORYSJ

Protein

Probable protein phosphatase 2C 54

Gene

Os06g0179700

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 68 (01 Oct 2014)
      Sequence version 1 (21 Dec 2004)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    [a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi109 – 1091Manganese 1By similarity
    Metal bindingi109 – 1091Manganese 2By similarity
    Metal bindingi110 – 1101Manganese 1; via carbonyl oxygenBy similarity
    Metal bindingi273 – 2731Manganese 2By similarity
    Metal bindingi316 – 3161Manganese 2By similarity

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. protein serine/threonine phosphatase activity Source: InterPro

    GO - Biological processi

    1. protein dephosphorylation Source: InterPro
    2. regulation of transcription from RNA polymerase II promoter in response to salt stress Source: EnsemblPlants/Gramene
    3. response to abscisic acid Source: EnsemblPlants/Gramene
    4. response to cold Source: EnsemblPlants/Gramene
    5. response to water deprivation Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    Hydrolase, Protein phosphatase

    Keywords - Ligandi

    Magnesium, Manganese, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable protein phosphatase 2C 54 (EC:3.1.3.16)
    Short name:
    OsPP2C54
    Gene namesi
    Ordered Locus Names:Os06g0179700, LOC_Os06g08140
    ORF Names:OSJNBa0035I03.20, OSJNBb0019L07.2
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 6

    Organism-specific databases

    GrameneiQ5SMK6.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: EnsemblPlants/Gramene
    2. nucleus Source: EnsemblPlants/Gramene

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 360360Probable protein phosphatase 2C 54PRO_0000363301Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliQ5SMK6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini64 – 318255PP2C-likeAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi18 – 247Poly-Ala

    Sequence similaritiesi

    Belongs to the PP2C family.Curated
    Contains 1 PP2C-like domain.Curated

    Phylogenomic databases

    eggNOGiCOG0631.
    HOGENOMiHOG000233896.
    KOiK14803.
    OMAiQYMEDTH.

    Family and domain databases

    Gene3Di3.60.40.10. 1 hit.
    InterProiIPR001932. PP2C-like_dom.
    IPR000222. PP2C_Mn2_Asp60_BS.
    IPR015655. Protein_Pase_2C.
    [Graphical view]
    PANTHERiPTHR13832. PTHR13832. 1 hit.
    PfamiPF00481. PP2C. 1 hit.
    [Graphical view]
    SMARTiSM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view]
    SUPFAMiSSF81606. SSF81606. 1 hit.
    PROSITEiPS01032. PP2C. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5SMK6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MCVEESEGAE RLDFGEPAAA AADAGKSKSK SPDELPSPRM ERVCENTTAA    50
    DFKQNKSGNF VPNIRSGDWS DIGGRQYMED THVCITDLAK NFGYQSVDNE 100
    AISFYGVFDG HGGKDAAHFV RDNLPRIIVE DADFPLELEK VVRRSFVHAD 150
    NQFAKTTLSS GTTALTAMIF GRTLLIANAG DCRAVLSRCG TAIEMSVDHR 200
    PCSLSEKLRV ESLGGYVDDG YLNGLLGVTR ALGDWHLEGM KEAGNPGGPL 250
    SAEPELKMIT LTKDDEFLII GSDGIWDVFS NQNVVDFARR RLQEHNDVKS 300
    CCREIVEEAI KRGATDNLTA VLVSFHLEAP PQVRVSRPGR VARSISAEGL 350
    NSLRTLLRNQ 360
    Length:360
    Mass (Da):39,351
    Last modified:December 21, 2004 - v1
    Checksum:iB9CB2C51C2CEF3F9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003019 Genomic DNA. Translation: BAD72302.1.
    AP007257 Genomic DNA. Translation: BAD72550.1.
    AP008212 Genomic DNA. Translation: BAF18885.1.
    AK065602 mRNA. Translation: BAG89581.1.
    RefSeqiNP_001056971.1. NM_001063506.1.
    UniGeneiOs.17303.

    Genome annotation databases

    EnsemblPlantsiOS06T0179700-01; OS06T0179700-01; OS06G0179700.
    GeneIDi4340303.
    KEGGiosa:4340303.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003019 Genomic DNA. Translation: BAD72302.1 .
    AP007257 Genomic DNA. Translation: BAD72550.1 .
    AP008212 Genomic DNA. Translation: BAF18885.1 .
    AK065602 mRNA. Translation: BAG89581.1 .
    RefSeqi NP_001056971.1. NM_001063506.1.
    UniGenei Os.17303.

    3D structure databases

    ProteinModelPortali Q5SMK6.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS06T0179700-01 ; OS06T0179700-01 ; OS06G0179700 .
    GeneIDi 4340303.
    KEGGi osa:4340303.

    Organism-specific databases

    Gramenei Q5SMK6.

    Phylogenomic databases

    eggNOGi COG0631.
    HOGENOMi HOG000233896.
    KOi K14803.
    OMAi QYMEDTH.

    Family and domain databases

    Gene3Di 3.60.40.10. 1 hit.
    InterProi IPR001932. PP2C-like_dom.
    IPR000222. PP2C_Mn2_Asp60_BS.
    IPR015655. Protein_Pase_2C.
    [Graphical view ]
    PANTHERi PTHR13832. PTHR13832. 1 hit.
    Pfami PF00481. PP2C. 1 hit.
    [Graphical view ]
    SMARTi SM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF81606. SSF81606. 1 hit.
    PROSITEi PS01032. PP2C. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    3. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.
    4. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
      Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
      BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiP2C54_ORYSJ
    AccessioniPrimary (citable) accession number: Q5SMK6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 10, 2009
    Last sequence update: December 21, 2004
    Last modified: October 1, 2014
    This is version 68 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3