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Protein

50S ribosomal protein L9

Gene

rplI

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA. Extends more that 50 Angstroms beyond the surface of the 70S ribosome.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L9
Gene namesi
Name:rplI
Ordered Locus Names:TTHA0242
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001766961 – 14850S ribosomal protein L9Add BLAST148

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0242.

Structurei

Secondary structure

1148
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 7Combined sources6
Beta strandi10 – 12Combined sources3
Beta strandi18 – 20Combined sources3
Helixi23 – 28Combined sources6
Helixi30 – 33Combined sources4
Beta strandi35 – 38Combined sources4
Helixi41 – 57Combined sources17
Helixi60 – 72Combined sources13
Beta strandi87 – 90Combined sources4
Helixi94 – 104Combined sources11
Beta strandi111 – 114Combined sources4
Beta strandi124 – 126Combined sources3
Beta strandi132 – 134Combined sources3
Beta strandi139 – 142Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RI/YI1-148[»]
1VY4X-ray2.60BI/DI1-148[»]
1VY5X-ray2.55BI/DI1-148[»]
1VY6X-ray2.90BI/DI1-148[»]
1VY7X-ray2.80BI/DI1-148[»]
4L47X-ray3.22RI/YI1-148[»]
4L71X-ray3.90RI/YI1-148[»]
4LELX-ray3.90RI/YI1-148[»]
4LFZX-ray3.92RI/YI1-148[»]
4LNTX-ray2.94RI/YI1-148[»]
4LSKX-ray3.48RI/YI1-148[»]
4LT8X-ray3.14RI/YI1-148[»]
4P6FX-ray3.60RI/YI1-148[»]
4P70X-ray3.68RI/YI1-148[»]
4TUAX-ray3.60RI/YI1-148[»]
4TUBX-ray3.60RI/YI1-148[»]
4TUCX-ray3.60RI/YI1-148[»]
4TUDX-ray3.60RI/YI1-148[»]
4TUEX-ray3.50RI/YI1-148[»]
4V42X-ray5.50BK43-49[»]
4V4PX-ray5.50K39-49[»]
4V4XX-ray5.00BK1-148[»]
4V4YX-ray5.50BK1-148[»]
4V4ZX-ray4.51BK1-148[»]
4V51X-ray2.80BI/DI1-148[»]
4V5AX-ray3.50BI/DI1-148[»]
4V5CX-ray3.30BI/DI1-148[»]
4V5DX-ray3.50BI/DI1-148[»]
4V5EX-ray3.45BI1-148[»]
4V5JX-ray3.10BI/DI1-148[»]
4V5KX-ray3.20BI/DI1-148[»]
4V67X-ray3.00I1-148[»]
4V68electron microscopy6.40BI1-145[»]
4V6AX-ray3.10BI/DI1-148[»]
4V6FX-ray3.10AK/DK1-148[»]
4V6GX-ray3.50BK/DK1-148[»]
4V7JX-ray3.30AI/BI1-148[»]
4V7KX-ray3.60AI/BI1-148[»]
4V7LX-ray3.00BI/DI1-148[»]
4V7MX-ray3.45BI/DI1-148[»]
4V7WX-ray3.00BI/DI1-148[»]
4V7XX-ray3.00BI/DI1-148[»]
4V7YX-ray3.00BI/DI1-148[»]
4V7ZX-ray3.10BI/DI1-148[»]
4V87X-ray3.10AK/DK1-146[»]
4V8AX-ray3.20AI/BI1-148[»]
4V8BX-ray3.00BK/DK1-148[»]
4V8CX-ray3.30AK/BK1-148[»]
4V8DX-ray3.00BK/DK1-148[»]
4V8EX-ray3.30AK/CK1-148[»]
4V8FX-ray3.30AK/DK1-148[»]
4V8GX-ray3.00BI/DI1-148[»]
4V8HX-ray3.10BI/DI1-148[»]
4V8IX-ray2.70BI/DI1-148[»]
4V8JX-ray3.90BI/DI1-148[»]
4V8NX-ray3.10BI/DI1-148[»]
4V8XX-ray3.35BI/DI1-148[»]
4V95X-ray3.20BI/DI1-148[»]
4V97X-ray3.52BI/DI1-148[»]
4V9AX-ray3.30BK/DK1-148[»]
4V9BX-ray3.10BK/DK1-148[»]
4V9IX-ray3.30BI/DI1-145[»]
4V9RX-ray3.00BI/DI1-148[»]
4V9SX-ray3.10BI/DI1-148[»]
4W2EX-ray2.90y1-74[»]
4W2FX-ray2.40BI/DI1-148[»]
4W2GX-ray2.55BI/DI1-148[»]
4W2HX-ray2.70BI/DI1-148[»]
4W2IX-ray2.70BI/DI1-148[»]
4W4GX-ray3.30RI/YI1-148[»]
4WPOX-ray2.80BZ/DZ1-74[»]
4WQ1X-ray3.1061/691-146[»]
4WQFX-ray2.80BZ/DZ1-74[»]
4WQRX-ray3.1561/691-148[»]
4WQUX-ray2.80BZ/DZ1-74[»]
4WQYX-ray2.80BZ/DZ1-74[»]
4WR6X-ray3.0561/691-148[»]
4WRAX-ray3.0561/691-148[»]
4WROX-ray3.05611-148[»]
4WSDX-ray2.9561/691-148[»]
4WSMX-ray3.3061/691-148[»]
4WT1X-ray3.0561/691-148[»]
4WT8X-ray3.40CI/DI1-145[»]
4WU1X-ray3.2061/691-148[»]
4WZDX-ray3.1061/691-148[»]
4WZOX-ray3.3061/691-148[»]
4Y4OX-ray2.301I/2I1-148[»]
4Y4PX-ray2.501I/2I1-148[»]
4YPBX-ray3.40RI/YI1-148[»]
4YZVX-ray3.10RI/YI1-148[»]
4Z3SX-ray2.651I/2I1-148[»]
4Z8CX-ray2.901I/2I1-148[»]
4ZERX-ray3.101I/2I1-147[»]
4ZSNX-ray3.60RI/YI1-148[»]
5CZPX-ray3.30RI/YI1-148[»]
5D8BX-ray3.63BB/F1-148[»]
5DFEX-ray3.10RI/YI1-148[»]
5DOXX-ray3.101I/2I1-148[»]
5DOYX-ray2.601I/2I1-148[»]
5E7KX-ray3.2061/691-148[»]
5E81X-ray2.9561/691-148[»]
5EL4X-ray3.1561/691-148[»]
5EL5X-ray3.1561/691-148[»]
5EL6X-ray3.1061/691-148[»]
5EL7X-ray3.1561/691-148[»]
5F8KX-ray2.801I/2I1-147[»]
5FDUX-ray2.901I/2I1-147[»]
5FDVX-ray2.801I/2I1-147[»]
5HAUX-ray3.001z/2z1-74[»]
5HCPX-ray2.891I/2I1-148[»]
5HCQX-ray2.801I/2I1-148[»]
5HCRX-ray2.801I/2I1-148[»]
5HD1X-ray2.701I/2I1-148[»]
5IB7X-ray2.9961/691-148[»]
5IB8X-ray3.1361/691-148[»]
5IBBX-ray2.9661/691-148[»]
5J30X-ray3.20RI/YI1-148[»]
5J3CX-ray3.04RI/YI1-148[»]
5J4BX-ray2.601I/2I1-148[»]
5J4CX-ray2.801I/2I1-148[»]
5J8BX-ray2.60z1-74[»]
ProteinModelPortaliQ5SLQ1.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SLQ1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L9P family.Curated

Phylogenomic databases

eggNOGiENOG4105K9Q. Bacteria.
COG0359. LUCA.
HOGENOMiHOG000040337.
KOiK02939.
OMAiVDVAPGY.
PhylomeDBiQ5SLQ1.

Family and domain databases

Gene3Di3.10.430.100. 1 hit.
3.40.5.10. 1 hit.
HAMAPiMF_00503. Ribosomal_L9. 1 hit.
InterProiIPR000244. Ribosomal_L9.
IPR009027. Ribosomal_L9/RNase_H1_N.
IPR020594. Ribosomal_L9_bac/chp.
IPR020069. Ribosomal_L9_C.
IPR020070. Ribosomal_L9_N.
[Graphical view]
PANTHERiPTHR21368. PTHR21368. 1 hit.
PfamiPF03948. Ribosomal_L9_C. 1 hit.
PF01281. Ribosomal_L9_N. 1 hit.
[Graphical view]
SUPFAMiSSF55653. SSF55653. 1 hit.
SSF55658. SSF55658. 1 hit.
TIGRFAMsiTIGR00158. L9. 1 hit.
PROSITEiPS00651. RIBOSOMAL_L9. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SLQ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVILLEPLE NLGDVGQVVD VKPGYARNYL LPRGLAVLAT ESNLKALEAR
60 70 80 90 100
IRAQAKRLAE RKAEAERLKE ILENLTLTIP VRAGETKIYG SVTAKDIAEA
110 120 130 140
LSRQHGVTID PKRLALEKPI KELGEYVLTY KPHPEVPIQL KVSVVAQE
Length:148
Mass (Da):16,397
Last modified:December 21, 2004 - v1
Checksum:iB807DB9453506A2F
GO

Mass spectrometryi

Molecular mass is 16397 Da from positions 1 - 148. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70065.1.
RefSeqiWP_011227802.1. NC_006461.1.
YP_143508.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70065; BAD70065; BAD70065.
GeneIDi3168676.
KEGGittj:TTHA0242.
PATRICi23955429. VBITheThe93045_0242.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70065.1.
RefSeqiWP_011227802.1. NC_006461.1.
YP_143508.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RI/YI1-148[»]
1VY4X-ray2.60BI/DI1-148[»]
1VY5X-ray2.55BI/DI1-148[»]
1VY6X-ray2.90BI/DI1-148[»]
1VY7X-ray2.80BI/DI1-148[»]
4L47X-ray3.22RI/YI1-148[»]
4L71X-ray3.90RI/YI1-148[»]
4LELX-ray3.90RI/YI1-148[»]
4LFZX-ray3.92RI/YI1-148[»]
4LNTX-ray2.94RI/YI1-148[»]
4LSKX-ray3.48RI/YI1-148[»]
4LT8X-ray3.14RI/YI1-148[»]
4P6FX-ray3.60RI/YI1-148[»]
4P70X-ray3.68RI/YI1-148[»]
4TUAX-ray3.60RI/YI1-148[»]
4TUBX-ray3.60RI/YI1-148[»]
4TUCX-ray3.60RI/YI1-148[»]
4TUDX-ray3.60RI/YI1-148[»]
4TUEX-ray3.50RI/YI1-148[»]
4V42X-ray5.50BK43-49[»]
4V4PX-ray5.50K39-49[»]
4V4XX-ray5.00BK1-148[»]
4V4YX-ray5.50BK1-148[»]
4V4ZX-ray4.51BK1-148[»]
4V51X-ray2.80BI/DI1-148[»]
4V5AX-ray3.50BI/DI1-148[»]
4V5CX-ray3.30BI/DI1-148[»]
4V5DX-ray3.50BI/DI1-148[»]
4V5EX-ray3.45BI1-148[»]
4V5JX-ray3.10BI/DI1-148[»]
4V5KX-ray3.20BI/DI1-148[»]
4V67X-ray3.00I1-148[»]
4V68electron microscopy6.40BI1-145[»]
4V6AX-ray3.10BI/DI1-148[»]
4V6FX-ray3.10AK/DK1-148[»]
4V6GX-ray3.50BK/DK1-148[»]
4V7JX-ray3.30AI/BI1-148[»]
4V7KX-ray3.60AI/BI1-148[»]
4V7LX-ray3.00BI/DI1-148[»]
4V7MX-ray3.45BI/DI1-148[»]
4V7WX-ray3.00BI/DI1-148[»]
4V7XX-ray3.00BI/DI1-148[»]
4V7YX-ray3.00BI/DI1-148[»]
4V7ZX-ray3.10BI/DI1-148[»]
4V87X-ray3.10AK/DK1-146[»]
4V8AX-ray3.20AI/BI1-148[»]
4V8BX-ray3.00BK/DK1-148[»]
4V8CX-ray3.30AK/BK1-148[»]
4V8DX-ray3.00BK/DK1-148[»]
4V8EX-ray3.30AK/CK1-148[»]
4V8FX-ray3.30AK/DK1-148[»]
4V8GX-ray3.00BI/DI1-148[»]
4V8HX-ray3.10BI/DI1-148[»]
4V8IX-ray2.70BI/DI1-148[»]
4V8JX-ray3.90BI/DI1-148[»]
4V8NX-ray3.10BI/DI1-148[»]
4V8XX-ray3.35BI/DI1-148[»]
4V95X-ray3.20BI/DI1-148[»]
4V97X-ray3.52BI/DI1-148[»]
4V9AX-ray3.30BK/DK1-148[»]
4V9BX-ray3.10BK/DK1-148[»]
4V9IX-ray3.30BI/DI1-145[»]
4V9RX-ray3.00BI/DI1-148[»]
4V9SX-ray3.10BI/DI1-148[»]
4W2EX-ray2.90y1-74[»]
4W2FX-ray2.40BI/DI1-148[»]
4W2GX-ray2.55BI/DI1-148[»]
4W2HX-ray2.70BI/DI1-148[»]
4W2IX-ray2.70BI/DI1-148[»]
4W4GX-ray3.30RI/YI1-148[»]
4WPOX-ray2.80BZ/DZ1-74[»]
4WQ1X-ray3.1061/691-146[»]
4WQFX-ray2.80BZ/DZ1-74[»]
4WQRX-ray3.1561/691-148[»]
4WQUX-ray2.80BZ/DZ1-74[»]
4WQYX-ray2.80BZ/DZ1-74[»]
4WR6X-ray3.0561/691-148[»]
4WRAX-ray3.0561/691-148[»]
4WROX-ray3.05611-148[»]
4WSDX-ray2.9561/691-148[»]
4WSMX-ray3.3061/691-148[»]
4WT1X-ray3.0561/691-148[»]
4WT8X-ray3.40CI/DI1-145[»]
4WU1X-ray3.2061/691-148[»]
4WZDX-ray3.1061/691-148[»]
4WZOX-ray3.3061/691-148[»]
4Y4OX-ray2.301I/2I1-148[»]
4Y4PX-ray2.501I/2I1-148[»]
4YPBX-ray3.40RI/YI1-148[»]
4YZVX-ray3.10RI/YI1-148[»]
4Z3SX-ray2.651I/2I1-148[»]
4Z8CX-ray2.901I/2I1-148[»]
4ZERX-ray3.101I/2I1-147[»]
4ZSNX-ray3.60RI/YI1-148[»]
5CZPX-ray3.30RI/YI1-148[»]
5D8BX-ray3.63BB/F1-148[»]
5DFEX-ray3.10RI/YI1-148[»]
5DOXX-ray3.101I/2I1-148[»]
5DOYX-ray2.601I/2I1-148[»]
5E7KX-ray3.2061/691-148[»]
5E81X-ray2.9561/691-148[»]
5EL4X-ray3.1561/691-148[»]
5EL5X-ray3.1561/691-148[»]
5EL6X-ray3.1061/691-148[»]
5EL7X-ray3.1561/691-148[»]
5F8KX-ray2.801I/2I1-147[»]
5FDUX-ray2.901I/2I1-147[»]
5FDVX-ray2.801I/2I1-147[»]
5HAUX-ray3.001z/2z1-74[»]
5HCPX-ray2.891I/2I1-148[»]
5HCQX-ray2.801I/2I1-148[»]
5HCRX-ray2.801I/2I1-148[»]
5HD1X-ray2.701I/2I1-148[»]
5IB7X-ray2.9961/691-148[»]
5IB8X-ray3.1361/691-148[»]
5IBBX-ray2.9661/691-148[»]
5J30X-ray3.20RI/YI1-148[»]
5J3CX-ray3.04RI/YI1-148[»]
5J4BX-ray2.601I/2I1-148[»]
5J4CX-ray2.801I/2I1-148[»]
5J8BX-ray2.60z1-74[»]
ProteinModelPortaliQ5SLQ1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA0242.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD70065; BAD70065; BAD70065.
GeneIDi3168676.
KEGGittj:TTHA0242.
PATRICi23955429. VBITheThe93045_0242.

Phylogenomic databases

eggNOGiENOG4105K9Q. Bacteria.
COG0359. LUCA.
HOGENOMiHOG000040337.
KOiK02939.
OMAiVDVAPGY.
PhylomeDBiQ5SLQ1.

Miscellaneous databases

EvolutionaryTraceiQ5SLQ1.

Family and domain databases

Gene3Di3.10.430.100. 1 hit.
3.40.5.10. 1 hit.
HAMAPiMF_00503. Ribosomal_L9. 1 hit.
InterProiIPR000244. Ribosomal_L9.
IPR009027. Ribosomal_L9/RNase_H1_N.
IPR020594. Ribosomal_L9_bac/chp.
IPR020069. Ribosomal_L9_C.
IPR020070. Ribosomal_L9_N.
[Graphical view]
PANTHERiPTHR21368. PTHR21368. 1 hit.
PfamiPF03948. Ribosomal_L9_C. 1 hit.
PF01281. Ribosomal_L9_N. 1 hit.
[Graphical view]
SUPFAMiSSF55653. SSF55653. 1 hit.
SSF55658. SSF55658. 1 hit.
TIGRFAMsiTIGR00158. L9. 1 hit.
PROSITEiPS00651. RIBOSOMAL_L9. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL9_THET8
AccessioniPrimary (citable) accession number: Q5SLQ1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: November 30, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.