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Protein

50S ribosomal protein L9

Gene

rplI

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA. Extends more that 50 Angstroms beyond the surface of the 70S ribosome.

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-251-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L9
Gene namesi
Name:rplI
Ordered Locus Names:TTHA0242
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14814850S ribosomal protein L9PRO_0000176696Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0242.

Structurei

Secondary structure

1
148
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 76Combined sources
Turni10 – 123Combined sources
Beta strandi14 – 163Combined sources
Beta strandi18 – 203Combined sources
Helixi23 – 286Combined sources
Turni29 – 346Combined sources
Beta strandi35 – 384Combined sources
Helixi42 – 7130Combined sources
Beta strandi72 – 809Combined sources
Turni84 – 863Combined sources
Beta strandi87 – 926Combined sources
Helixi94 – 10310Combined sources
Turni104 – 1063Combined sources
Helixi111 – 1133Combined sources
Beta strandi120 – 1223Combined sources
Beta strandi124 – 1296Combined sources
Beta strandi131 – 1344Combined sources
Beta strandi136 – 1383Combined sources
Beta strandi139 – 1457Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RI/YI1-148[»]
1VY4X-ray2.60BI/DI1-148[»]
1VY5X-ray2.55BI/DI1-148[»]
1VY6X-ray2.90BI/DI1-148[»]
1VY7X-ray2.80BI/DI1-148[»]
4L47X-ray3.22RI/YI1-148[»]
4L71X-ray3.90RI/YI1-148[»]
4LELX-ray3.90RI/YI1-148[»]
4LFZX-ray3.92RI/YI1-148[»]
4LNTX-ray2.94RI/YI1-148[»]
4LSKX-ray3.48RI/YI1-148[»]
4LT8X-ray3.14RI/YI1-148[»]
4P6FX-ray3.60RI/YI1-148[»]
4P70X-ray3.68RI/YI1-148[»]
4V42X-ray5.50K43-49[»]
4V4PX-ray5.50K39-49[»]
4V4XX-ray5.00BK1-148[»]
4V4YX-ray5.50BK1-148[»]
4V4ZX-ray4.51BK1-148[»]
4V51X-ray2.80BI/DI1-148[»]
4V5AX-ray3.50BI/DI1-148[»]
4V5CX-ray3.30BI/DI1-148[»]
4V5DX-ray3.50BI/DI1-148[»]
4V5EX-ray3.45BI1-148[»]
4V5JX-ray3.10BI/DI1-148[»]
4V5KX-ray3.20BI/DI1-148[»]
4V67X-ray3.00I1-148[»]
4V68electron microscopy6.40BI1-145[»]
4V6AX-ray3.10BI/DI1-148[»]
4V6FX-ray3.10AK/DK1-148[»]
4V6GX-ray3.50BK/DK1-148[»]
4V7JX-ray3.30AI/BI1-148[»]
4V7KX-ray3.60AI/BI1-148[»]
4V7LX-ray3.00BI/DI1-148[»]
4V7MX-ray3.45BI/DI1-148[»]
4V7WX-ray3.00BI/DI1-148[»]
4V7XX-ray3.00BI/DI1-148[»]
4V7YX-ray3.00BI/DI1-148[»]
4V7ZX-ray3.10BI/DI1-148[»]
4V87X-ray3.10AK/DK1-146[»]
4V8AX-ray3.20AI/BI1-148[»]
4V8BX-ray3.00BK/DK1-148[»]
4V8CX-ray3.30AK/BK1-148[»]
4V8DX-ray3.00BK/DK1-148[»]
4V8EX-ray3.30AK/CK1-148[»]
4V8FX-ray3.30AK/DK1-148[»]
4V8GX-ray3.00BI/DI1-148[»]
4V8HX-ray3.10BI/DI1-148[»]
4V8IX-ray2.70BI/DI1-148[»]
4V8JX-ray3.90BI/DI1-148[»]
4V8NX-ray3.10BI/DI1-148[»]
4V8XX-ray3.35BI/DI1-148[»]
4V95X-ray3.20BI/DI1-148[»]
4V97X-ray3.52BI/DI1-148[»]
4V9AX-ray3.30BK/DK1-148[»]
4V9BX-ray3.10BK/DK1-148[»]
4V9IX-ray3.30BI/DI1-145[»]
4V9RX-ray3.00BI/DI1-148[»]
4V9SX-ray3.10BI/DI1-148[»]
4W2EX-ray2.90y1-74[»]
4W2FX-ray2.40BI/DI1-148[»]
4W2GX-ray2.55BI/DI1-148[»]
4W2HX-ray2.70BI/DI1-148[»]
4W2IX-ray2.70BI/DI1-148[»]
4WPOX-ray2.80BZ/DZ1-74[»]
4WQFX-ray2.80BZ/DZ1-74[»]
4WQUX-ray2.80BZ/DZ1-74[»]
4WQYX-ray2.80BZ/DZ1-74[»]
4WWEX-ray3.40I1-145[»]
4WWTX-ray3.40I1-145[»]
ProteinModelPortaliQ5SLQ1.
SMRiQ5SLQ1. Positions 1-145.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SLQ1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L9P family.Curated

Phylogenomic databases

eggNOGiCOG0359.
HOGENOMiHOG000040337.
KOiK02939.
OMAiVDVAPGY.
OrthoDBiEOG6D8BH0.
PhylomeDBiQ5SLQ1.

Family and domain databases

Gene3Di3.10.430.100. 1 hit.
3.40.5.10. 1 hit.
HAMAPiMF_00503. Ribosomal_L9.
InterProiIPR000244. Ribosomal_L9.
IPR009027. Ribosomal_L9/RNase_H1_N.
IPR020594. Ribosomal_L9_bac/chp.
IPR020069. Ribosomal_L9_C.
IPR020070. Ribosomal_L9_N.
[Graphical view]
PANTHERiPTHR21368. PTHR21368. 1 hit.
PfamiPF03948. Ribosomal_L9_C. 1 hit.
PF01281. Ribosomal_L9_N. 1 hit.
[Graphical view]
SUPFAMiSSF55653. SSF55653. 1 hit.
SSF55658. SSF55658. 1 hit.
TIGRFAMsiTIGR00158. L9. 1 hit.
PROSITEiPS00651. RIBOSOMAL_L9. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SLQ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVILLEPLE NLGDVGQVVD VKPGYARNYL LPRGLAVLAT ESNLKALEAR
60 70 80 90 100
IRAQAKRLAE RKAEAERLKE ILENLTLTIP VRAGETKIYG SVTAKDIAEA
110 120 130 140
LSRQHGVTID PKRLALEKPI KELGEYVLTY KPHPEVPIQL KVSVVAQE
Length:148
Mass (Da):16,397
Last modified:December 21, 2004 - v1
Checksum:iB807DB9453506A2F
GO

Mass spectrometryi

Molecular mass is 16397 Da from positions 1 - 148. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70065.1.
RefSeqiWP_011227802.1. NC_006461.1.
YP_143508.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70065; BAD70065; BAD70065.
GeneIDi3168676.
KEGGittj:TTHA0242.
PATRICi23955429. VBITheThe93045_0242.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70065.1.
RefSeqiWP_011227802.1. NC_006461.1.
YP_143508.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RI/YI1-148[»]
1VY4X-ray2.60BI/DI1-148[»]
1VY5X-ray2.55BI/DI1-148[»]
1VY6X-ray2.90BI/DI1-148[»]
1VY7X-ray2.80BI/DI1-148[»]
4L47X-ray3.22RI/YI1-148[»]
4L71X-ray3.90RI/YI1-148[»]
4LELX-ray3.90RI/YI1-148[»]
4LFZX-ray3.92RI/YI1-148[»]
4LNTX-ray2.94RI/YI1-148[»]
4LSKX-ray3.48RI/YI1-148[»]
4LT8X-ray3.14RI/YI1-148[»]
4P6FX-ray3.60RI/YI1-148[»]
4P70X-ray3.68RI/YI1-148[»]
4V42X-ray5.50K43-49[»]
4V4PX-ray5.50K39-49[»]
4V4XX-ray5.00BK1-148[»]
4V4YX-ray5.50BK1-148[»]
4V4ZX-ray4.51BK1-148[»]
4V51X-ray2.80BI/DI1-148[»]
4V5AX-ray3.50BI/DI1-148[»]
4V5CX-ray3.30BI/DI1-148[»]
4V5DX-ray3.50BI/DI1-148[»]
4V5EX-ray3.45BI1-148[»]
4V5JX-ray3.10BI/DI1-148[»]
4V5KX-ray3.20BI/DI1-148[»]
4V67X-ray3.00I1-148[»]
4V68electron microscopy6.40BI1-145[»]
4V6AX-ray3.10BI/DI1-148[»]
4V6FX-ray3.10AK/DK1-148[»]
4V6GX-ray3.50BK/DK1-148[»]
4V7JX-ray3.30AI/BI1-148[»]
4V7KX-ray3.60AI/BI1-148[»]
4V7LX-ray3.00BI/DI1-148[»]
4V7MX-ray3.45BI/DI1-148[»]
4V7WX-ray3.00BI/DI1-148[»]
4V7XX-ray3.00BI/DI1-148[»]
4V7YX-ray3.00BI/DI1-148[»]
4V7ZX-ray3.10BI/DI1-148[»]
4V87X-ray3.10AK/DK1-146[»]
4V8AX-ray3.20AI/BI1-148[»]
4V8BX-ray3.00BK/DK1-148[»]
4V8CX-ray3.30AK/BK1-148[»]
4V8DX-ray3.00BK/DK1-148[»]
4V8EX-ray3.30AK/CK1-148[»]
4V8FX-ray3.30AK/DK1-148[»]
4V8GX-ray3.00BI/DI1-148[»]
4V8HX-ray3.10BI/DI1-148[»]
4V8IX-ray2.70BI/DI1-148[»]
4V8JX-ray3.90BI/DI1-148[»]
4V8NX-ray3.10BI/DI1-148[»]
4V8XX-ray3.35BI/DI1-148[»]
4V95X-ray3.20BI/DI1-148[»]
4V97X-ray3.52BI/DI1-148[»]
4V9AX-ray3.30BK/DK1-148[»]
4V9BX-ray3.10BK/DK1-148[»]
4V9IX-ray3.30BI/DI1-145[»]
4V9RX-ray3.00BI/DI1-148[»]
4V9SX-ray3.10BI/DI1-148[»]
4W2EX-ray2.90y1-74[»]
4W2FX-ray2.40BI/DI1-148[»]
4W2GX-ray2.55BI/DI1-148[»]
4W2HX-ray2.70BI/DI1-148[»]
4W2IX-ray2.70BI/DI1-148[»]
4WPOX-ray2.80BZ/DZ1-74[»]
4WQFX-ray2.80BZ/DZ1-74[»]
4WQUX-ray2.80BZ/DZ1-74[»]
4WQYX-ray2.80BZ/DZ1-74[»]
4WWEX-ray3.40I1-145[»]
4WWTX-ray3.40I1-145[»]
ProteinModelPortaliQ5SLQ1.
SMRiQ5SLQ1. Positions 1-145.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA0242.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD70065; BAD70065; BAD70065.
GeneIDi3168676.
KEGGittj:TTHA0242.
PATRICi23955429. VBITheThe93045_0242.

Phylogenomic databases

eggNOGiCOG0359.
HOGENOMiHOG000040337.
KOiK02939.
OMAiVDVAPGY.
OrthoDBiEOG6D8BH0.
PhylomeDBiQ5SLQ1.

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-251-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ5SLQ1.

Family and domain databases

Gene3Di3.10.430.100. 1 hit.
3.40.5.10. 1 hit.
HAMAPiMF_00503. Ribosomal_L9.
InterProiIPR000244. Ribosomal_L9.
IPR009027. Ribosomal_L9/RNase_H1_N.
IPR020594. Ribosomal_L9_bac/chp.
IPR020069. Ribosomal_L9_C.
IPR020070. Ribosomal_L9_N.
[Graphical view]
PANTHERiPTHR21368. PTHR21368. 1 hit.
PfamiPF03948. Ribosomal_L9_C. 1 hit.
PF01281. Ribosomal_L9_N. 1 hit.
[Graphical view]
SUPFAMiSSF55653. SSF55653. 1 hit.
SSF55658. SSF55658. 1 hit.
TIGRFAMsiTIGR00158. L9. 1 hit.
PROSITEiPS00651. RIBOSOMAL_L9. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
    Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
    Endocyt. Cell Res. 11:41-58(1995)
    Cited for: PROTEIN SEQUENCE OF 1-31.
  3. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-15.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  5. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  6. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

Entry informationi

Entry nameiRL9_THET8
AccessioniPrimary (citable) accession number: Q5SLQ1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: April 29, 2015
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.