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Q5SLQ1

- RL9_THET8

UniProt

Q5SLQ1 - RL9_THET8

Protein

50S ribosomal protein L9

Gene

rplI

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 85 (01 Oct 2014)
      Sequence version 1 (21 Dec 2004)
      Previous versions | rss
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    Functioni

    Binds to the 23S rRNA. Extends more that 50 Angstroms beyond the surface of the 70S ribosome.

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-251-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L9
    Gene namesi
    Name:rplI
    Ordered Locus Names:TTHA0242
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 14814850S ribosomal protein L9PRO_0000176696Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.

    Protein-protein interaction databases

    STRINGi300852.TTHA0242.

    Structurei

    Secondary structure

    1
    148
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi2 – 76
    Turni10 – 123
    Beta strandi14 – 163
    Beta strandi18 – 203
    Helixi23 – 286
    Helixi31 – 333
    Beta strandi35 – 384
    Helixi41 – 5212
    Helixi54 – 7118
    Beta strandi72 – 743
    Beta strandi77 – 804
    Beta strandi83 – 908
    Helixi94 – 1018
    Turni102 – 1054
    Helixi111 – 1133
    Beta strandi120 – 1223
    Beta strandi124 – 1296
    Beta strandi131 – 1344
    Beta strandi136 – 1383
    Beta strandi139 – 1457

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1GIYX-ray5.50K43-49[»]
    1YL3X-ray5.50K39-49[»]
    2HGJX-ray5.00K1-148[»]
    2HGQX-ray5.50K1-148[»]
    2HGUX-ray4.51K1-148[»]
    2J01X-ray2.80I1-148[»]
    2J03X-ray2.80I1-148[»]
    2V47X-ray3.80I1-148[»]
    2V49X-ray3.80I1-148[»]
    2WDIX-ray3.30I1-148[»]
    2WDJX-ray3.30I1-148[»]
    2WDLX-ray3.50I1-148[»]
    2WDNX-ray3.50I1-148[»]
    2WH2X-ray3.45I1-148[»]
    2WH4X-ray3.45I1-148[»]
    2X9SX-ray3.10I1-148[»]
    2X9UX-ray3.10I1-148[»]
    2XG0X-ray3.20I1-148[»]
    2XG2X-ray3.20I1-148[»]
    3F1FX-ray3.00I1-148[»]
    3F1HX-ray3.00I1-148[»]
    3FINelectron microscopy6.40I1-145[»]
    3HUXX-ray3.10I1-148[»]
    3HUZX-ray3.10I1-148[»]
    3I8FX-ray3.10K1-148[»]
    3I8IX-ray3.10K1-148[»]
    3I9CX-ray3.50K1-148[»]
    3I9EX-ray3.50K1-148[»]
    3KIRX-ray3.30I1-148[»]
    3KITX-ray3.30I1-148[»]
    3KIWX-ray3.60I1-148[»]
    3KIYX-ray3.60I1-148[»]
    3KNIX-ray3.00I1-148[»]
    3KNKX-ray3.00I1-148[»]
    3KNMX-ray3.45I1-148[»]
    3KNOX-ray3.45I1-148[»]
    3OH7X-ray3.00I1-148[»]
    3OI1X-ray3.00I1-148[»]
    3OI5X-ray3.10I1-148[»]
    3TVEX-ray3.10K1-146[»]
    3TVHX-ray3.10K1-146[»]
    3UXQX-ray3.20I1-148[»]
    3UXRX-ray3.20I1-148[»]
    3UYEX-ray3.00K1-148[»]
    3UYGX-ray3.00K1-148[»]
    3UZ1X-ray3.30K1-148[»]
    3UZ2X-ray3.30K1-148[»]
    3UZ8X-ray3.00K1-148[»]
    3UZ9X-ray3.00K1-148[»]
    3UZFX-ray3.30K1-148[»]
    3UZHX-ray3.30K1-148[»]
    3UZKX-ray3.30K1-148[»]
    3UZNX-ray3.30K1-148[»]
    3V23X-ray3.00I1-148[»]
    3V25X-ray3.00I1-148[»]
    3V27X-ray3.10I1-148[»]
    3V29X-ray3.10I1-148[»]
    3V2DX-ray2.70I1-148[»]
    3V2FX-ray2.70I1-148[»]
    3V6WX-ray3.90I1-148[»]
    3V6XX-ray3.90I1-148[»]
    3ZN9X-ray3.10I1-148[»]
    3ZNEX-ray3.10I1-148[»]
    4BYCX-ray3.35I1-148[»]
    4BYEX-ray3.35I1-148[»]
    4DHAX-ray3.20I1-148[»]
    4DHCX-ray3.20I1-148[»]
    4EJBX-ray3.52I1-148[»]
    4EJCX-ray3.52I1-148[»]
    4G5LX-ray3.30K1-148[»]
    4G5NX-ray3.30K1-148[»]
    4G5UX-ray3.10K1-148[»]
    4G5WX-ray3.10K1-148[»]
    4K0MX-ray3.30I1-145[»]
    4K0QX-ray3.30I1-145[»]
    4NVVX-ray3.00I1-148[»]
    4NVXX-ray3.00I1-148[»]
    4NVZX-ray3.10I1-148[»]
    4NW1X-ray3.10I1-148[»]
    ProteinModelPortaliQ5SLQ1.
    SMRiQ5SLQ1. Positions 1-145.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ5SLQ1.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L9P family.Curated

    Phylogenomic databases

    eggNOGiCOG0359.
    HOGENOMiHOG000040337.
    KOiK02939.
    OMAiAKSEVRM.
    OrthoDBiEOG6D8BH0.
    PhylomeDBiQ5SLQ1.

    Family and domain databases

    Gene3Di3.10.430.100. 1 hit.
    3.40.5.10. 1 hit.
    HAMAPiMF_00503. Ribosomal_L9.
    InterProiIPR000244. Ribosomal_L9.
    IPR009027. Ribosomal_L9/RNase_H1_N.
    IPR020594. Ribosomal_L9_bac/chp.
    IPR020069. Ribosomal_L9_C.
    IPR020070. Ribosomal_L9_N.
    [Graphical view]
    PANTHERiPTHR21368. PTHR21368. 1 hit.
    PfamiPF03948. Ribosomal_L9_C. 1 hit.
    PF01281. Ribosomal_L9_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF55653. SSF55653. 1 hit.
    SSF55658. SSF55658. 1 hit.
    TIGRFAMsiTIGR00158. L9. 1 hit.
    PROSITEiPS00651. RIBOSOMAL_L9. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5SLQ1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKVILLEPLE NLGDVGQVVD VKPGYARNYL LPRGLAVLAT ESNLKALEAR    50
    IRAQAKRLAE RKAEAERLKE ILENLTLTIP VRAGETKIYG SVTAKDIAEA 100
    LSRQHGVTID PKRLALEKPI KELGEYVLTY KPHPEVPIQL KVSVVAQE 148
    Length:148
    Mass (Da):16,397
    Last modified:December 21, 2004 - v1
    Checksum:iB807DB9453506A2F
    GO

    Mass spectrometryi

    Molecular mass is 16397 Da from positions 1 - 148. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD70065.1.
    RefSeqiWP_011227802.1. NC_006461.1.
    YP_143508.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD70065; BAD70065; BAD70065.
    GeneIDi3168676.
    KEGGittj:TTHA0242.
    PATRICi23955429. VBITheThe93045_0242.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD70065.1 .
    RefSeqi WP_011227802.1. NC_006461.1.
    YP_143508.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1GIY X-ray 5.50 K 43-49 [» ]
    1YL3 X-ray 5.50 K 39-49 [» ]
    2HGJ X-ray 5.00 K 1-148 [» ]
    2HGQ X-ray 5.50 K 1-148 [» ]
    2HGU X-ray 4.51 K 1-148 [» ]
    2J01 X-ray 2.80 I 1-148 [» ]
    2J03 X-ray 2.80 I 1-148 [» ]
    2V47 X-ray 3.80 I 1-148 [» ]
    2V49 X-ray 3.80 I 1-148 [» ]
    2WDI X-ray 3.30 I 1-148 [» ]
    2WDJ X-ray 3.30 I 1-148 [» ]
    2WDL X-ray 3.50 I 1-148 [» ]
    2WDN X-ray 3.50 I 1-148 [» ]
    2WH2 X-ray 3.45 I 1-148 [» ]
    2WH4 X-ray 3.45 I 1-148 [» ]
    2X9S X-ray 3.10 I 1-148 [» ]
    2X9U X-ray 3.10 I 1-148 [» ]
    2XG0 X-ray 3.20 I 1-148 [» ]
    2XG2 X-ray 3.20 I 1-148 [» ]
    3F1F X-ray 3.00 I 1-148 [» ]
    3F1H X-ray 3.00 I 1-148 [» ]
    3FIN electron microscopy 6.40 I 1-145 [» ]
    3HUX X-ray 3.10 I 1-148 [» ]
    3HUZ X-ray 3.10 I 1-148 [» ]
    3I8F X-ray 3.10 K 1-148 [» ]
    3I8I X-ray 3.10 K 1-148 [» ]
    3I9C X-ray 3.50 K 1-148 [» ]
    3I9E X-ray 3.50 K 1-148 [» ]
    3KIR X-ray 3.30 I 1-148 [» ]
    3KIT X-ray 3.30 I 1-148 [» ]
    3KIW X-ray 3.60 I 1-148 [» ]
    3KIY X-ray 3.60 I 1-148 [» ]
    3KNI X-ray 3.00 I 1-148 [» ]
    3KNK X-ray 3.00 I 1-148 [» ]
    3KNM X-ray 3.45 I 1-148 [» ]
    3KNO X-ray 3.45 I 1-148 [» ]
    3OH7 X-ray 3.00 I 1-148 [» ]
    3OI1 X-ray 3.00 I 1-148 [» ]
    3OI5 X-ray 3.10 I 1-148 [» ]
    3TVE X-ray 3.10 K 1-146 [» ]
    3TVH X-ray 3.10 K 1-146 [» ]
    3UXQ X-ray 3.20 I 1-148 [» ]
    3UXR X-ray 3.20 I 1-148 [» ]
    3UYE X-ray 3.00 K 1-148 [» ]
    3UYG X-ray 3.00 K 1-148 [» ]
    3UZ1 X-ray 3.30 K 1-148 [» ]
    3UZ2 X-ray 3.30 K 1-148 [» ]
    3UZ8 X-ray 3.00 K 1-148 [» ]
    3UZ9 X-ray 3.00 K 1-148 [» ]
    3UZF X-ray 3.30 K 1-148 [» ]
    3UZH X-ray 3.30 K 1-148 [» ]
    3UZK X-ray 3.30 K 1-148 [» ]
    3UZN X-ray 3.30 K 1-148 [» ]
    3V23 X-ray 3.00 I 1-148 [» ]
    3V25 X-ray 3.00 I 1-148 [» ]
    3V27 X-ray 3.10 I 1-148 [» ]
    3V29 X-ray 3.10 I 1-148 [» ]
    3V2D X-ray 2.70 I 1-148 [» ]
    3V2F X-ray 2.70 I 1-148 [» ]
    3V6W X-ray 3.90 I 1-148 [» ]
    3V6X X-ray 3.90 I 1-148 [» ]
    3ZN9 X-ray 3.10 I 1-148 [» ]
    3ZNE X-ray 3.10 I 1-148 [» ]
    4BYC X-ray 3.35 I 1-148 [» ]
    4BYE X-ray 3.35 I 1-148 [» ]
    4DHA X-ray 3.20 I 1-148 [» ]
    4DHC X-ray 3.20 I 1-148 [» ]
    4EJB X-ray 3.52 I 1-148 [» ]
    4EJC X-ray 3.52 I 1-148 [» ]
    4G5L X-ray 3.30 K 1-148 [» ]
    4G5N X-ray 3.30 K 1-148 [» ]
    4G5U X-ray 3.10 K 1-148 [» ]
    4G5W X-ray 3.10 K 1-148 [» ]
    4K0M X-ray 3.30 I 1-145 [» ]
    4K0Q X-ray 3.30 I 1-145 [» ]
    4NVV X-ray 3.00 I 1-148 [» ]
    4NVX X-ray 3.00 I 1-148 [» ]
    4NVZ X-ray 3.10 I 1-148 [» ]
    4NW1 X-ray 3.10 I 1-148 [» ]
    ProteinModelPortali Q5SLQ1.
    SMRi Q5SLQ1. Positions 1-145.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA0242.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD70065 ; BAD70065 ; BAD70065 .
    GeneIDi 3168676.
    KEGGi ttj:TTHA0242.
    PATRICi 23955429. VBITheThe93045_0242.

    Phylogenomic databases

    eggNOGi COG0359.
    HOGENOMi HOG000040337.
    KOi K02939.
    OMAi AKSEVRM.
    OrthoDBi EOG6D8BH0.
    PhylomeDBi Q5SLQ1.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-251-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q5SLQ1.

    Family and domain databases

    Gene3Di 3.10.430.100. 1 hit.
    3.40.5.10. 1 hit.
    HAMAPi MF_00503. Ribosomal_L9.
    InterProi IPR000244. Ribosomal_L9.
    IPR009027. Ribosomal_L9/RNase_H1_N.
    IPR020594. Ribosomal_L9_bac/chp.
    IPR020069. Ribosomal_L9_C.
    IPR020070. Ribosomal_L9_N.
    [Graphical view ]
    PANTHERi PTHR21368. PTHR21368. 1 hit.
    Pfami PF03948. Ribosomal_L9_C. 1 hit.
    PF01281. Ribosomal_L9_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55653. SSF55653. 1 hit.
    SSF55658. SSF55658. 1 hit.
    TIGRFAMsi TIGR00158. L9. 1 hit.
    PROSITEi PS00651. RIBOSOMAL_L9. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    2. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
      Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
      Endocyt. Cell Res. 11:41-58(1995)
      Cited for: PROTEIN SEQUENCE OF 1-31.
    3. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
      Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
      Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 1-15.
    4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
    5. "The path of messenger RNA through the ribosome."
      Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
      Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
    6. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

    Entry informationi

    Entry nameiRL9_THET8
    AccessioniPrimary (citable) accession number: Q5SLQ1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 29, 2005
    Last sequence update: December 21, 2004
    Last modified: October 1, 2014
    This is version 85 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3