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Q5SLQ1 (RL9_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 83. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L9
Gene names
Name:rplI
Ordered Locus Names:TTHA0242
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length148 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Binds to the 23S rRNA. Extends more that 50 Angstroms beyond the surface of the 70S ribosome. HAMAP-Rule MF_00503

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L9P family.

Mass spectrometry

Molecular mass is 16397 Da from positions 1 - 148. Determined by MALDI. Ref.4

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 14814850S ribosomal protein L9 HAMAP-Rule MF_00503
PRO_0000176696

Secondary structure

...................................... 148
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5SLQ1 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: B807DB9453506A2F

FASTA14816,397
        10         20         30         40         50         60 
MKVILLEPLE NLGDVGQVVD VKPGYARNYL LPRGLAVLAT ESNLKALEAR IRAQAKRLAE 

        70         80         90        100        110        120 
RKAEAERLKE ILENLTLTIP VRAGETKIYG SVTAKDIAEA LSRQHGVTID PKRLALEKPI 

       130        140 
KELGEYVLTY KPHPEVPIQL KVSVVAQE 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
Endocyt. Cell Res. 11:41-58(1995)
Cited for: PROTEIN SEQUENCE OF 1-31.
[3]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-15.
[4]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[5]"The path of messenger RNA through the ribosome."
Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[6]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008226 Genomic DNA. Translation: BAD70065.1.
RefSeqYP_143508.1. NC_006461.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50K43-49[»]
1YL3X-ray5.50K39-49[»]
2HGJX-ray5.00K1-148[»]
2HGQX-ray5.50K1-148[»]
2HGUX-ray4.51K1-148[»]
2J01X-ray2.80I1-148[»]
2J03X-ray2.80I1-148[»]
2V47X-ray3.80I1-148[»]
2V49X-ray3.80I1-148[»]
2WDIX-ray3.30I1-148[»]
2WDJX-ray3.30I1-148[»]
2WDLX-ray3.50I1-148[»]
2WDNX-ray3.50I1-148[»]
2WH2X-ray3.45I1-148[»]
2WH4X-ray3.45I1-148[»]
2X9SX-ray3.10I1-148[»]
2X9UX-ray3.10I1-148[»]
2XG0X-ray3.20I1-148[»]
2XG2X-ray3.20I1-148[»]
3F1FX-ray3.00I1-148[»]
3F1HX-ray3.00I1-148[»]
3FINelectron microscopy6.40I1-145[»]
3HUXX-ray3.10I1-148[»]
3HUZX-ray3.10I1-148[»]
3I8FX-ray3.10K1-148[»]
3I8IX-ray3.10K1-148[»]
3I9CX-ray3.50K1-148[»]
3I9EX-ray3.50K1-148[»]
3KIRX-ray3.30I1-148[»]
3KITX-ray3.30I1-148[»]
3KIWX-ray3.60I1-148[»]
3KIYX-ray3.60I1-148[»]
3KNIX-ray3.00I1-148[»]
3KNKX-ray3.00I1-148[»]
3KNMX-ray3.45I1-148[»]
3KNOX-ray3.45I1-148[»]
3OH7X-ray3.00I1-148[»]
3OI1X-ray3.00I1-148[»]
3OI5X-ray3.10I1-148[»]
3TVEX-ray3.10K1-146[»]
3TVHX-ray3.10K1-146[»]
3UXQX-ray3.20I1-148[»]
3UXRX-ray3.20I1-148[»]
3UYEX-ray3.00K1-148[»]
3UYGX-ray3.00K1-148[»]
3UZ1X-ray3.30K1-148[»]
3UZ2X-ray3.30K1-148[»]
3UZ8X-ray3.00K1-148[»]
3UZ9X-ray3.00K1-148[»]
3UZFX-ray3.30K1-148[»]
3UZHX-ray3.30K1-148[»]
3UZKX-ray3.30K1-148[»]
3UZNX-ray3.30K1-148[»]
3V23X-ray3.00I1-148[»]
3V25X-ray3.00I1-148[»]
3V27X-ray3.10I1-148[»]
3V29X-ray3.10I1-148[»]
3V2DX-ray2.70I1-148[»]
3V2FX-ray2.70I1-148[»]
3V6WX-ray3.90I1-148[»]
3V6XX-ray3.90I1-148[»]
3ZN9X-ray3.10I1-148[»]
3ZNEX-ray3.10I1-148[»]
4BYCX-ray3.35I1-148[»]
4BYEX-ray3.35I1-148[»]
4DHAX-ray3.20I1-148[»]
4DHCX-ray3.20I1-148[»]
4EJBX-ray3.52I1-148[»]
4EJCX-ray3.52I1-148[»]
4G5LX-ray3.30K1-148[»]
4G5NX-ray3.30K1-148[»]
4G5UX-ray3.10K1-148[»]
4G5WX-ray3.10K1-148[»]
4K0MX-ray3.30I1-145[»]
4K0QX-ray3.30I1-145[»]
4NVVX-ray3.00I1-148[»]
4NVXX-ray3.00I1-148[»]
4NVZX-ray3.10I1-148[»]
4NW1X-ray3.10I1-148[»]
ProteinModelPortalQ5SLQ1.
SMRQ5SLQ1. Positions 1-145.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA0242.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD70065; BAD70065; BAD70065.
GeneID3168676.
KEGGttj:TTHA0242.
PATRIC23955429. VBITheThe93045_0242.

Phylogenomic databases

eggNOGCOG0359.
HOGENOMHOG000040337.
KOK02939.
OMAAKSEVRM.
OrthoDBEOG6D8BH0.
PhylomeDBQ5SLQ1.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-251-MONOMER.

Family and domain databases

Gene3D3.10.430.100. 1 hit.
3.40.5.10. 1 hit.
HAMAPMF_00503. Ribosomal_L9.
InterProIPR000244. Ribosomal_L9.
IPR009027. Ribosomal_L9/RNase_H1_N.
IPR020594. Ribosomal_L9_bac/chp.
IPR020069. Ribosomal_L9_C.
IPR020070. Ribosomal_L9_N.
[Graphical view]
PANTHERPTHR21368. PTHR21368. 1 hit.
PfamPF03948. Ribosomal_L9_C. 1 hit.
PF01281. Ribosomal_L9_N. 1 hit.
[Graphical view]
SUPFAMSSF55653. SSF55653. 1 hit.
SSF55658. SSF55658. 1 hit.
TIGRFAMsTIGR00158. L9. 1 hit.
PROSITEPS00651. RIBOSOMAL_L9. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ5SLQ1.

Entry information

Entry nameRL9_THET8
AccessionPrimary (citable) accession number: Q5SLQ1
Entry history
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: July 9, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references