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Protein

30S ribosomal protein S6

Gene

rpsF

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Located on the outer edge of the platform on the body of the 30S subunit.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S6
Alternative name(s):
TS9
Gene namesi
Name:rpsF
Ordered Locus Names:TTHA0245
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Chemistry databases

DrugBankiDB08185. 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001768631 – 10130S ribosomal protein S6Add BLAST101

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S18. May make transient contacts with protein L2 of the 50S subunit during translation.

Protein-protein interaction databases

STRINGi300852.TTHA0245.

Structurei

Secondary structure

1101
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 10Combined sources9
Helixi16 – 30Combined sources15
Helixi31 – 33Combined sources3
Beta strandi36 – 39Combined sources4
Beta strandi40 – 42Combined sources3
Beta strandi44 – 52Combined sources9
Beta strandi60 – 66Combined sources7
Helixi69 – 80Combined sources12
Beta strandi82 – 84Combined sources3
Beta strandi85 – 92Combined sources8
Beta strandi97 – 100Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00F1-101[»]
1FKAX-ray3.30F1-101[»]
1G1XX-ray2.60A/F1-98[»]
1HNWX-ray3.40F1-101[»]
1HNXX-ray3.40F1-101[»]
1HNZX-ray3.30F1-101[»]
1HR0X-ray3.20F1-101[»]
1I94X-ray3.20F1-101[»]
1I95X-ray4.50F1-101[»]
1I96X-ray4.20F1-101[»]
1I97X-ray4.50F1-101[»]
1IBKX-ray3.31F1-101[»]
1IBLX-ray3.11F1-101[»]
1IBMX-ray3.31F1-101[»]
1J5EX-ray3.05F1-101[»]
1JGOX-ray5.60I1-101[»]
1JGPX-ray7.00I1-101[»]
1JGQX-ray5.00I1-101[»]
1L1Umodel-F1-101[»]
1ML5electron microscopy14.00I1-101[»]
1N32X-ray3.00F1-101[»]
1N33X-ray3.35F1-101[»]
1N34X-ray3.80F1-101[»]
1N36X-ray3.65F1-101[»]
1QD7X-ray5.50E1-97[»]
1VVJX-ray3.44QF/XF1-101[»]
1VY4X-ray2.60AF/CF1-101[»]
1VY5X-ray2.55AF/CF1-101[»]
1VY6X-ray2.90AF/CF1-101[»]
1VY7X-ray2.80AF/CF1-101[»]
1XMOX-ray3.25F1-101[»]
1XMQX-ray3.00F1-101[»]
1XNQX-ray3.05F1-101[»]
1XNRX-ray3.10F1-101[»]
2E5LX-ray3.30F1-101[»]
2F4VX-ray3.80F1-101[»]
2HHHX-ray3.35F1-101[»]
2KJVNMR-A1-101[»]
2KJWNMR-A3-54[»]
2UU9X-ray3.10F1-101[»]
2UUAX-ray2.90F1-101[»]
2UUBX-ray2.90F1-101[»]
2UUCX-ray3.10F1-101[»]
2UXBX-ray3.10F1-101[»]
2UXCX-ray2.90F1-101[»]
2UXDX-ray3.20F1-101[»]
2VQEX-ray2.50F1-101[»]
2VQFX-ray2.90F1-101[»]
2ZM6X-ray3.30F1-101[»]
3OTOX-ray3.69F1-101[»]
3T1HX-ray3.11F1-101[»]
3T1YX-ray2.80F1-101[»]
3ZZPX-ray0.96A55-100[»]
4AQYX-ray3.50F1-101[»]
4B3MX-ray2.90F1-101[»]
4B3RX-ray3.00F1-101[»]
4B3SX-ray3.15F1-101[»]
4B3TX-ray3.00F1-101[»]
4DR1X-ray3.60F1-101[»]
4DR2X-ray3.25F1-101[»]
4DR3X-ray3.35F1-101[»]
4DR4X-ray3.97F1-101[»]
4DR5X-ray3.45F1-101[»]
4DR6X-ray3.30F1-101[»]
4DR7X-ray3.75F1-101[»]
4DUYX-ray3.39F1-101[»]
4DUZX-ray3.65F1-101[»]
4DV0X-ray3.85F1-101[»]
4DV1X-ray3.85F1-101[»]
4DV2X-ray3.65F1-101[»]
4DV3X-ray3.55F1-101[»]
4DV4X-ray3.65F1-101[»]
4DV5X-ray3.68F1-101[»]
4DV6X-ray3.30F1-101[»]
4DV7X-ray3.29F1-101[»]
4GKJX-ray3.30F1-101[»]
4GKKX-ray3.20F1-101[»]
4JI0X-ray3.49F1-101[»]
4JI1X-ray3.14F1-101[»]
4JI2X-ray3.64F1-101[»]
4JI3X-ray3.35F1-101[»]
4JI4X-ray3.69F1-101[»]
4JI5X-ray3.85F1-101[»]
4JI6X-ray3.55F1-101[»]
4JI7X-ray3.50F1-101[»]
4JI8X-ray3.74F1-101[»]
4JV5X-ray3.16F1-101[»]
4JYAX-ray3.10F1-101[»]
4K0KX-ray3.40F1-101[»]
4KHPX-ray3.10F1-101[»]
4L47X-ray3.22QF/XF1-101[»]
4L71X-ray3.90QF/XF1-101[»]
4LELX-ray3.90QF/XF1-101[»]
4LF4X-ray3.34F1-101[»]
4LF5X-ray3.75F1-101[»]
4LF6X-ray3.31F1-101[»]
4LF7X-ray3.15F1-101[»]
4LF8X-ray3.15F1-101[»]
4LF9X-ray3.28F1-101[»]
4LFAX-ray3.65F1-101[»]
4LFBX-ray3.01F1-101[»]
4LFCX-ray3.60F1-101[»]
4LFZX-ray3.92QF/XF1-101[»]
4LNTX-ray2.94QF/XF1-101[»]
4LSKX-ray3.48QF/XF1-101[»]
4LT8X-ray3.14QF/XF1-101[»]
4NXMX-ray3.65F1-101[»]
4NXNX-ray3.54F1-101[»]
4OX9X-ray3.80F1-101[»]
4P6FX-ray3.60QF/XF1-101[»]
4P70X-ray3.68QF/XF1-101[»]
4TUAX-ray3.60QF/XF1-101[»]
4TUBX-ray3.60QF/XF1-101[»]
4TUCX-ray3.60QF/XF1-101[»]
4TUDX-ray3.60QF/XF1-101[»]
4TUEX-ray3.50QF/XF1-101[»]
4V42X-ray5.50AI1-101[»]
4V49X-ray8.70F1-101[»]
4V4AX-ray9.50F1-101[»]
4V4IX-ray3.71g-[»]
4V4PX-ray5.50BI1-101[»]
4V4RX-ray5.90AF1-101[»]
4V4SX-ray6.76AF1-101[»]
4V4TX-ray6.46AF1-101[»]
4V4XX-ray5.00AI1-101[»]
4V4YX-ray5.50AI1-101[»]
4V4ZX-ray4.51AI1-101[»]
4V51X-ray2.80AF/CF1-101[»]
4V5AX-ray3.50AF/CF1-101[»]
4V5CX-ray3.30AF/CF1-101[»]
4V5DX-ray3.50AF/CF1-101[»]
4V5EX-ray3.45AF/CF1-101[»]
4V5FX-ray3.60AF/CF1-101[»]
4V5GX-ray3.60AF/CF1-101[»]
4V5JX-ray3.10AF/CF1-101[»]
4V5KX-ray3.20AF/CF1-101[»]
4V5LX-ray3.10AF1-101[»]
4V5Melectron microscopy7.80AF1-101[»]
4V5Nelectron microscopy7.60AF1-101[»]
4V5PX-ray3.10AF/CF1-101[»]
4V5QX-ray3.10AF/CF1-101[»]
4V5RX-ray3.10AF/CF1-101[»]
4V5SX-ray3.10AF/CF1-101[»]
4V68electron microscopy6.40AF1-101[»]
4V6AX-ray3.10AF/CF1-101[»]
4V6FX-ray3.10BI/CI1-101[»]
4V6GX-ray3.50AI/CI1-101[»]
4V7JX-ray3.30Af/Bf1-101[»]
4V7KX-ray3.60Af/Bf1-101[»]
4V7LX-ray3.00AF/CF1-101[»]
4V7MX-ray3.45AF/CF1-101[»]
4V7WX-ray3.00AF/CF1-101[»]
4V7XX-ray3.00AF/CF1-101[»]
4V7YX-ray3.00AF/CF1-101[»]
4V7ZX-ray3.10AF/CF1-101[»]
4V87X-ray3.10BI/CI1-101[»]
4V8AX-ray3.20CF/DF1-101[»]
4V8BX-ray3.00AI/CI1-101[»]
4V8CX-ray3.30CI/DI1-101[»]
4V8DX-ray3.00AI/CI1-101[»]
4V8EX-ray3.30BI/DI1-101[»]
4V8FX-ray3.30BI/CI1-101[»]
4V8GX-ray3.00AF/CF1-101[»]
4V8HX-ray3.10AF/CF1-101[»]
4V8IX-ray2.70AF/CF1-101[»]
4V8JX-ray3.90AF/CF1-101[»]
4V8NX-ray3.10AF/CF1-101[»]
4V8OX-ray3.80AF1-101[»]
4V8QX-ray3.10BF1-101[»]
4V8UX-ray3.70AF/CF1-101[»]
4V8XX-ray3.35AF/CF1-101[»]
4V90X-ray2.95AF1-101[»]
4V95X-ray3.20AF/CF1-101[»]
4V97X-ray3.52AF/CF1-101[»]
4V9AX-ray3.30AI/CI1-101[»]
4V9BX-ray3.10AI/CI1-101[»]
4V9HX-ray2.86AF1-101[»]
4V9IX-ray3.30AF/CF1-101[»]
4V9RX-ray3.00AF/CF1-101[»]
4V9SX-ray3.10AF/CF1-101[»]
4W2EX-ray2.90f1-101[»]
4W2FX-ray2.40AF/CF1-101[»]
4W2GX-ray2.55AF/CF1-101[»]
4W2HX-ray2.70AF/CF1-101[»]
4W2IX-ray2.70AF/CF1-101[»]
4W4GX-ray3.30QF/XF1-101[»]
4WPOX-ray2.80BF/DF1-101[»]
4WQ1X-ray3.1052/5E1-101[»]
4WQFX-ray2.80BF/DF1-101[»]
4WQRX-ray3.1552/5E1-101[»]
4WQUX-ray2.80BF/DF1-101[»]
4WQYX-ray2.80BF/DF1-101[»]
4WR6X-ray3.0552/5E1-101[»]
4WRAX-ray3.0552/5E1-101[»]
4WROX-ray3.055E1-101[»]
4WSDX-ray2.9552/5E1-101[»]
4WSMX-ray3.3052/5E1-101[»]
4WT1X-ray3.0552/5E1-101[»]
4WT8X-ray3.40AF/BF1-101[»]
4WU1X-ray3.2052/5E1-101[»]
4WZDX-ray3.1052/5E1-101[»]
4WZOX-ray3.3052/5E1-101[»]
4X62X-ray3.45F1-101[»]
4X64X-ray3.35F1-101[»]
4X65X-ray3.35F1-101[»]
4X66X-ray3.45F1-101[»]
4Y4OX-ray2.301f/2f1-101[»]
4Y4PX-ray2.501f/2f1-101[»]
4YHHX-ray3.42F1-101[»]
4YPBX-ray3.40QF/XF1-101[»]
4YY3X-ray3.60F1-101[»]
4YZVX-ray3.10QF/XF1-101[»]
4Z3SX-ray2.651f/2f1-101[»]
4Z8CX-ray2.901f/2f1-101[»]
4ZERX-ray3.101f/2f1-100[»]
4ZSNX-ray3.60QF/XF1-101[»]
5A9Zelectron microscopy4.70BJ1-101[»]
5AA0electron microscopy5.00BJ1-101[»]
5BR8X-ray3.40F1-101[»]
5CZPX-ray3.30QF/XF1-101[»]
5D8BX-ray3.63CC/GA1-101[»]
5DFEX-ray3.10QF/XF1-101[»]
5DOXX-ray3.101f/2f1-101[»]
5DOYX-ray2.601f/2f1-101[»]
5E7KX-ray3.2052/5E1-101[»]
5E81X-ray2.9552/5E1-101[»]
5EL4X-ray3.1552/5E1-101[»]
5EL5X-ray3.1552/5E1-101[»]
5EL6X-ray3.1052/5E1-101[»]
5EL7X-ray3.1552/5E1-101[»]
5F8KX-ray2.801f/2f1-100[»]
5FDUX-ray2.901f/2f1-100[»]
5FDVX-ray2.801f/2f1-100[»]
5HAUX-ray3.001f/2f1-101[»]
5HCPX-ray2.891f/2f1-101[»]
5HCQX-ray2.801f/2f1-101[»]
5HCRX-ray2.801f/2f1-101[»]
5HD1X-ray2.701f/2f1-101[»]
5IB7X-ray2.9952/5E1-101[»]
5IB8X-ray3.1352/5E1-101[»]
5IBBX-ray2.9652/5E1-101[»]
5IMQelectron microscopy3.80J1-101[»]
5IMRelectron microscopy-J1-101[»]
5IWAX-ray3.50F1-101[»]
5J30X-ray3.20QF/XF1-101[»]
5J3CX-ray3.04QF/XF1-101[»]
5J4BX-ray2.601f/2f1-101[»]
5J4CX-ray2.801f/2f1-101[»]
5J8BX-ray2.60f1-101[»]
5LMNelectron microscopy3.55F1-101[»]
5LMOelectron microscopy4.30F1-101[»]
5LMPelectron microscopy5.35F1-101[»]
5LMQelectron microscopy4.20F1-101[»]
5LMRelectron microscopy4.45F1-101[»]
5LMSelectron microscopy5.10F1-101[»]
5LMTelectron microscopy4.15F1-101[»]
5LMUelectron microscopy4.00F1-101[»]
5LMVelectron microscopy4.90F1-101[»]
ProteinModelPortaliQ5SLP8.
SMRiQ5SLP8.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SLP8.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG41082AW. Bacteria.
COG0360. LUCA.
HOGENOMiHOG000040440.
KOiK02990.
OMAiVKDRPEW.
PhylomeDBiQ5SLP8.

Family and domain databases

Gene3Di3.30.70.60. 1 hit.
HAMAPiMF_00360. Ribosomal_S6. 1 hit.
InterProiView protein in InterPro
IPR000529. Ribosomal_S6.
IPR020815. Ribosomal_S6_CS.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
PANTHERiPTHR21011. PTHR21011. 1 hit.
PfamiView protein in Pfam
PF01250. Ribosomal_S6. 1 hit.
SUPFAMiSSF54995. SSF54995. 1 hit.
TIGRFAMsiTIGR00166. S6. 1 hit.
PROSITEiView protein in PROSITE
PS01048. RIBOSOMAL_S6. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5SLP8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRYEVNIVL NPNLDQSQLA LEKEIIQRAL ENYGARVEKV EELGLRRLAY
60 70 80 90 100
PIAKDPQGYF LWYQVEMPED RVNDLARELR IRDNVRRVMV VKSQEPFLAN

A
Length:101
Mass (Da):11,973
Last modified:December 21, 2004 - v1
Checksum:i4FEE8005C74902E5
GO

Mass spectrometryi

Molecular mass is 11973 Da from positions 1 - 101. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70068.1.
RefSeqiWP_011174099.1. NC_006461.1.
YP_143511.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70068; BAD70068; BAD70068.
GeneIDi3168355.
KEGGittj:TTHA0245.
PATRICifig|300852.9.peg.245.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS6_THET8
AccessioniPrimary (citable) accession number: Q5SLP8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: December 21, 2004
Last modified: June 7, 2017
This is version 118 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families