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Protein

50S ribosomal protein L35

Gene

rpmI

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-577-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L35
Gene namesi
Name:rpmI
Ordered Locus Names:TTHA0552
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed2 Publications
Chaini2 – 656450S ribosomal protein L35PRO_0000177443Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0552.

Structurei

Secondary structure

1
65
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi8 – 114Combined sources
Beta strandi14 – 163Combined sources
Beta strandi18 – 203Combined sources
Beta strandi22 – 254Combined sources
Turni27 – 315Combined sources
Beta strandi34 – 363Combined sources
Helixi38 – 436Combined sources
Beta strandi46 – 494Combined sources
Helixi52 – 609Combined sources
Turni61 – 633Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVMX-ray3.2281-65[»]
1VVOX-ray3.2281-65[»]
1VVQX-ray3.9081-65[»]
1VVSX-ray3.9081-65[»]
1VVUX-ray3.9081-65[»]
1VVWX-ray3.9081-65[»]
1VVYX-ray3.9281-65[»]
1VW0X-ray3.9281-65[»]
1VX9X-ray2.9481-65[»]
1VXJX-ray2.9481-65[»]
1VXLX-ray3.4881-65[»]
1VXNX-ray3.4881-65[»]
1VXQX-ray3.1481-65[»]
1VXTX-ray3.1481-65[»]
1VY1X-ray3.6881-65[»]
1VY3X-ray3.6881-65[»]
1YL3X-ray5.5081-63[»]
2HGJX-ray5.0071-65[»]
2HGQX-ray5.5071-65[»]
2HGUX-ray4.5171-65[»]
2J01X-ray2.8081-65[»]
2J03X-ray2.8081-65[»]
2WDIX-ray3.3081-65[»]
2WDJX-ray3.3081-65[»]
2WDLX-ray3.5081-65[»]
2WDNX-ray3.5081-65[»]
2WH2X-ray3.4581-65[»]
2WH4X-ray3.4581-65[»]
2WRJX-ray3.6081-65[»]
2WRLX-ray3.6081-65[»]
2WROX-ray3.6081-65[»]
2WRRX-ray3.6081-65[»]
2X9SX-ray3.1081-65[»]
2X9UX-ray3.1081-65[»]
2XG0X-ray3.2081-65[»]
2XG2X-ray3.2081-65[»]
2XQEX-ray3.1081-65[»]
2XTGelectron microscopy7.8081-65[»]
2XUXelectron microscopy7.6081-65[»]
2Y0VX-ray3.1081-65[»]
2Y0XX-ray3.1081-65[»]
2Y0ZX-ray3.1081-65[»]
2Y11X-ray3.1081-65[»]
2Y13X-ray3.1081-65[»]
2Y15X-ray3.1081-65[»]
2Y17X-ray3.1081-65[»]
2Y19X-ray3.1081-65[»]
3FINelectron microscopy6.4082-65[»]
3HUXX-ray3.1081-65[»]
3HUZX-ray3.1081-65[»]
3I8FX-ray3.1081-65[»]
3I8IX-ray3.1081-65[»]
3I9CX-ray3.5081-65[»]
3I9EX-ray3.5081-65[»]
3KIRX-ray3.3081-65[»]
3KITX-ray3.3081-65[»]
3KIWX-ray3.6081-65[»]
3KIYX-ray3.6081-65[»]
3KNIX-ray3.0081-65[»]
3KNKX-ray3.0081-65[»]
3KNMX-ray3.4581-65[»]
3KNOX-ray3.4581-65[»]
3OH5X-ray3.0081-65[»]
3OH7X-ray3.0081-65[»]
3OHJX-ray3.0081-65[»]
3OHKX-ray3.0081-65[»]
3OHZX-ray3.0081-65[»]
3OI1X-ray3.0081-65[»]
3OI3X-ray3.1081-65[»]
3OI5X-ray3.1081-65[»]
3TVEX-ray3.1082-62[»]
3TVHX-ray3.1082-62[»]
3UXQX-ray3.2081-65[»]
3UXRX-ray3.2081-65[»]
3UYEX-ray3.0081-65[»]
3UYGX-ray3.0081-65[»]
3UZ1X-ray3.3081-65[»]
3UZ2X-ray3.3081-65[»]
3UZ8X-ray3.0081-65[»]
3UZ9X-ray3.0081-65[»]
3UZFX-ray3.3081-65[»]
3UZHX-ray3.3081-65[»]
3UZKX-ray3.3081-65[»]
3UZNX-ray3.3081-65[»]
3V23X-ray3.0081-65[»]
3V25X-ray3.0081-65[»]
3V27X-ray3.1081-65[»]
3V29X-ray3.1081-65[»]
3V2DX-ray2.7081-65[»]
3V2FX-ray2.7081-65[»]
3V6WX-ray3.9081-65[»]
3V6XX-ray3.9081-65[»]
3ZN9X-ray3.1081-65[»]
3ZNEX-ray3.1081-65[»]
3ZVPX-ray3.8081-65[»]
4ABSX-ray3.1081-65[»]
4B8GX-ray3.7081-65[»]
4B8IX-ray3.7081-65[»]
4BTDX-ray2.9582-65[»]
4BYCX-ray3.3581-65[»]
4BYEX-ray3.3581-65[»]
4DHAX-ray3.2081-65[»]
4DHCX-ray3.2081-65[»]
4EJBX-ray3.5281-65[»]
4EJCX-ray3.5281-65[»]
4G5LX-ray3.3081-65[»]
4G5NX-ray3.3081-65[»]
4G5UX-ray3.1081-65[»]
4G5WX-ray3.1081-65[»]
4JUXX-ray2.8681-65[»]
4K0MX-ray3.3082-64[»]
4K0QX-ray3.3082-64[»]
4KX0X-ray3.4481-65[»]
4KX2X-ray3.4481-65[»]
4NVVX-ray3.0081-65[»]
4NVXX-ray3.0081-65[»]
4NVZX-ray3.1081-65[»]
4NW1X-ray3.1081-65[»]
4QCNX-ray2.6081-65[»]
4QCPX-ray2.6081-65[»]
4QCRX-ray2.5581-65[»]
4QCTX-ray2.5581-65[»]
4QCVX-ray2.9081-65[»]
4QCXX-ray2.9081-65[»]
4QCZX-ray2.8081-65[»]
4QD1X-ray2.8081-65[»]
4QJSX-ray2.9081-65[»]
4RB6X-ray2.4081-65[»]
4RB8X-ray2.4081-65[»]
4RBAX-ray2.5581-65[»]
4RBCX-ray2.5581-65[»]
4RBEX-ray2.7081-65[»]
4RBGX-ray2.7081-65[»]
4RBIX-ray2.7081-65[»]
4RBKX-ray2.7081-65[»]
4W2BX-ray3.60d1-65[»]
4W2DX-ray3.60d1-65[»]
ProteinModelPortaliQ5SKU1.
SMRiQ5SKU1. Positions 1-64.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SKU1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35P family.Curated

Phylogenomic databases

eggNOGiCOG0291.
HOGENOMiHOG000040108.
KOiK02916.
OMAiNTEMAGS.
OrthoDBiEOG651T3B.
PhylomeDBiQ5SKU1.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SKU1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPKMKTHKGA KKRVKITASG KVVAMKTGKR HLNWQKSGKE IRQKGRKFVL
60
AKPEAERIKL LLPYE
Length:65
Mass (Da):7,484
Last modified:January 23, 2007 - v3
Checksum:i05D4C15C51166C43
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti65 – 651E → ER AA sequence 1 PublicationCurated

Mass spectrometryi

Molecular mass is 7354 Da from positions 2 - 65. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70375.1.
RefSeqiYP_143818.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70375; BAD70375; BAD70375.
GeneIDi3169498.
KEGGittj:TTHA0552.
PATRICi23956081. VBITheThe93045_0551.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70375.1.
RefSeqiYP_143818.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVMX-ray3.2281-65[»]
1VVOX-ray3.2281-65[»]
1VVQX-ray3.9081-65[»]
1VVSX-ray3.9081-65[»]
1VVUX-ray3.9081-65[»]
1VVWX-ray3.9081-65[»]
1VVYX-ray3.9281-65[»]
1VW0X-ray3.9281-65[»]
1VX9X-ray2.9481-65[»]
1VXJX-ray2.9481-65[»]
1VXLX-ray3.4881-65[»]
1VXNX-ray3.4881-65[»]
1VXQX-ray3.1481-65[»]
1VXTX-ray3.1481-65[»]
1VY1X-ray3.6881-65[»]
1VY3X-ray3.6881-65[»]
1YL3X-ray5.5081-63[»]
2HGJX-ray5.0071-65[»]
2HGQX-ray5.5071-65[»]
2HGUX-ray4.5171-65[»]
2J01X-ray2.8081-65[»]
2J03X-ray2.8081-65[»]
2WDIX-ray3.3081-65[»]
2WDJX-ray3.3081-65[»]
2WDLX-ray3.5081-65[»]
2WDNX-ray3.5081-65[»]
2WH2X-ray3.4581-65[»]
2WH4X-ray3.4581-65[»]
2WRJX-ray3.6081-65[»]
2WRLX-ray3.6081-65[»]
2WROX-ray3.6081-65[»]
2WRRX-ray3.6081-65[»]
2X9SX-ray3.1081-65[»]
2X9UX-ray3.1081-65[»]
2XG0X-ray3.2081-65[»]
2XG2X-ray3.2081-65[»]
2XQEX-ray3.1081-65[»]
2XTGelectron microscopy7.8081-65[»]
2XUXelectron microscopy7.6081-65[»]
2Y0VX-ray3.1081-65[»]
2Y0XX-ray3.1081-65[»]
2Y0ZX-ray3.1081-65[»]
2Y11X-ray3.1081-65[»]
2Y13X-ray3.1081-65[»]
2Y15X-ray3.1081-65[»]
2Y17X-ray3.1081-65[»]
2Y19X-ray3.1081-65[»]
3FINelectron microscopy6.4082-65[»]
3HUXX-ray3.1081-65[»]
3HUZX-ray3.1081-65[»]
3I8FX-ray3.1081-65[»]
3I8IX-ray3.1081-65[»]
3I9CX-ray3.5081-65[»]
3I9EX-ray3.5081-65[»]
3KIRX-ray3.3081-65[»]
3KITX-ray3.3081-65[»]
3KIWX-ray3.6081-65[»]
3KIYX-ray3.6081-65[»]
3KNIX-ray3.0081-65[»]
3KNKX-ray3.0081-65[»]
3KNMX-ray3.4581-65[»]
3KNOX-ray3.4581-65[»]
3OH5X-ray3.0081-65[»]
3OH7X-ray3.0081-65[»]
3OHJX-ray3.0081-65[»]
3OHKX-ray3.0081-65[»]
3OHZX-ray3.0081-65[»]
3OI1X-ray3.0081-65[»]
3OI3X-ray3.1081-65[»]
3OI5X-ray3.1081-65[»]
3TVEX-ray3.1082-62[»]
3TVHX-ray3.1082-62[»]
3UXQX-ray3.2081-65[»]
3UXRX-ray3.2081-65[»]
3UYEX-ray3.0081-65[»]
3UYGX-ray3.0081-65[»]
3UZ1X-ray3.3081-65[»]
3UZ2X-ray3.3081-65[»]
3UZ8X-ray3.0081-65[»]
3UZ9X-ray3.0081-65[»]
3UZFX-ray3.3081-65[»]
3UZHX-ray3.3081-65[»]
3UZKX-ray3.3081-65[»]
3UZNX-ray3.3081-65[»]
3V23X-ray3.0081-65[»]
3V25X-ray3.0081-65[»]
3V27X-ray3.1081-65[»]
3V29X-ray3.1081-65[»]
3V2DX-ray2.7081-65[»]
3V2FX-ray2.7081-65[»]
3V6WX-ray3.9081-65[»]
3V6XX-ray3.9081-65[»]
3ZN9X-ray3.1081-65[»]
3ZNEX-ray3.1081-65[»]
3ZVPX-ray3.8081-65[»]
4ABSX-ray3.1081-65[»]
4B8GX-ray3.7081-65[»]
4B8IX-ray3.7081-65[»]
4BTDX-ray2.9582-65[»]
4BYCX-ray3.3581-65[»]
4BYEX-ray3.3581-65[»]
4DHAX-ray3.2081-65[»]
4DHCX-ray3.2081-65[»]
4EJBX-ray3.5281-65[»]
4EJCX-ray3.5281-65[»]
4G5LX-ray3.3081-65[»]
4G5NX-ray3.3081-65[»]
4G5UX-ray3.1081-65[»]
4G5WX-ray3.1081-65[»]
4JUXX-ray2.8681-65[»]
4K0MX-ray3.3082-64[»]
4K0QX-ray3.3082-64[»]
4KX0X-ray3.4481-65[»]
4KX2X-ray3.4481-65[»]
4NVVX-ray3.0081-65[»]
4NVXX-ray3.0081-65[»]
4NVZX-ray3.1081-65[»]
4NW1X-ray3.1081-65[»]
4QCNX-ray2.6081-65[»]
4QCPX-ray2.6081-65[»]
4QCRX-ray2.5581-65[»]
4QCTX-ray2.5581-65[»]
4QCVX-ray2.9081-65[»]
4QCXX-ray2.9081-65[»]
4QCZX-ray2.8081-65[»]
4QD1X-ray2.8081-65[»]
4QJSX-ray2.9081-65[»]
4RB6X-ray2.4081-65[»]
4RB8X-ray2.4081-65[»]
4RBAX-ray2.5581-65[»]
4RBCX-ray2.5581-65[»]
4RBEX-ray2.7081-65[»]
4RBGX-ray2.7081-65[»]
4RBIX-ray2.7081-65[»]
4RBKX-ray2.7081-65[»]
4W2BX-ray3.60d1-65[»]
4W2DX-ray3.60d1-65[»]
ProteinModelPortaliQ5SKU1.
SMRiQ5SKU1. Positions 1-64.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA0552.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD70375; BAD70375; BAD70375.
GeneIDi3169498.
KEGGittj:TTHA0552.
PATRICi23956081. VBITheThe93045_0551.

Phylogenomic databases

eggNOGiCOG0291.
HOGENOMiHOG000040108.
KOiK02916.
OMAiNTEMAGS.
OrthoDBiEOG651T3B.
PhylomeDBiQ5SKU1.

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-577-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ5SKU1.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
    Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
    Endocyt. Cell Res. 11:41-58(1995)
    Cited for: PROTEIN SEQUENCE OF 2-65.
  3. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-25.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.

Entry informationi

Entry nameiRL35_THET8
AccessioniPrimary (citable) accession number: Q5SKU1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: February 4, 2015
This is version 83 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.