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Q5SKU1

- RL35_THET8

UniProt

Q5SKU1 - RL35_THET8

Protein

50S ribosomal protein L35

Gene

rpmI

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-577-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L35
    Gene namesi
    Name:rpmI
    Ordered Locus Names:TTHA0552
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed2 Publications
    Chaini2 – 656450S ribosomal protein L35PRO_0000177443Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.

    Protein-protein interaction databases

    STRINGi300852.TTHA0552.

    Structurei

    Secondary structure

    1
    65
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi8 – 114
    Beta strandi14 – 163
    Beta strandi18 – 203
    Beta strandi22 – 254
    Turni27 – 315
    Beta strandi34 – 363
    Helixi38 – 436
    Beta strandi46 – 494
    Helixi52 – 609
    Turni61 – 633

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1YL3X-ray5.5081-63[»]
    2HGJX-ray5.0071-65[»]
    2HGQX-ray5.5071-65[»]
    2HGUX-ray4.5171-65[»]
    2J01X-ray2.8081-65[»]
    2J03X-ray2.8081-65[»]
    2WDIX-ray3.3081-65[»]
    2WDJX-ray3.3081-65[»]
    2WDLX-ray3.5081-65[»]
    2WDNX-ray3.5081-65[»]
    2WH2X-ray3.4581-65[»]
    2WH4X-ray3.4581-65[»]
    2WRJX-ray3.6081-65[»]
    2WRLX-ray3.6081-65[»]
    2WROX-ray3.6081-65[»]
    2WRRX-ray3.6081-65[»]
    2X9SX-ray3.1081-65[»]
    2X9UX-ray3.1081-65[»]
    2XG0X-ray3.2081-65[»]
    2XG2X-ray3.2081-65[»]
    2XQEX-ray3.1081-65[»]
    2XTGelectron microscopy7.8081-65[»]
    2XUXelectron microscopy7.6081-65[»]
    2Y0VX-ray3.1081-65[»]
    2Y0XX-ray3.1081-65[»]
    2Y0ZX-ray3.1081-65[»]
    2Y11X-ray3.1081-65[»]
    2Y13X-ray3.1081-65[»]
    2Y15X-ray3.1081-65[»]
    2Y17X-ray3.1081-65[»]
    2Y19X-ray3.1081-65[»]
    3FINelectron microscopy6.4082-65[»]
    3HUXX-ray3.1081-65[»]
    3HUZX-ray3.1081-65[»]
    3I8FX-ray3.1081-65[»]
    3I8IX-ray3.1081-65[»]
    3I9CX-ray3.5081-65[»]
    3I9EX-ray3.5081-65[»]
    3KIRX-ray3.3081-65[»]
    3KITX-ray3.3081-65[»]
    3KIWX-ray3.6081-65[»]
    3KIYX-ray3.6081-65[»]
    3KNIX-ray3.0081-65[»]
    3KNKX-ray3.0081-65[»]
    3KNMX-ray3.4581-65[»]
    3KNOX-ray3.4581-65[»]
    3OH5X-ray3.0081-65[»]
    3OH7X-ray3.0081-65[»]
    3OHJX-ray3.0081-65[»]
    3OHKX-ray3.0081-65[»]
    3OHZX-ray3.0081-65[»]
    3OI1X-ray3.0081-65[»]
    3OI3X-ray3.1081-65[»]
    3OI5X-ray3.1081-65[»]
    3TVEX-ray3.1082-62[»]
    3TVHX-ray3.1082-62[»]
    3UXQX-ray3.2081-65[»]
    3UXRX-ray3.2081-65[»]
    3UYEX-ray3.0081-65[»]
    3UYGX-ray3.0081-65[»]
    3UZ1X-ray3.3081-65[»]
    3UZ2X-ray3.3081-65[»]
    3UZ8X-ray3.0081-65[»]
    3UZ9X-ray3.0081-65[»]
    3UZFX-ray3.3081-65[»]
    3UZHX-ray3.3081-65[»]
    3UZKX-ray3.3081-65[»]
    3UZNX-ray3.3081-65[»]
    3V23X-ray3.0081-65[»]
    3V25X-ray3.0081-65[»]
    3V27X-ray3.1081-65[»]
    3V29X-ray3.1081-65[»]
    3V2DX-ray2.7081-65[»]
    3V2FX-ray2.7081-65[»]
    3V6WX-ray3.9081-65[»]
    3V6XX-ray3.9081-65[»]
    3ZN9X-ray3.1081-65[»]
    3ZNEX-ray3.1081-65[»]
    3ZVPX-ray3.8081-65[»]
    4ABSX-ray3.1081-65[»]
    4B8GX-ray3.7081-65[»]
    4B8IX-ray3.7081-65[»]
    4BTDX-ray2.9582-65[»]
    4BYCX-ray3.3581-65[»]
    4BYEX-ray3.3581-65[»]
    4DHAX-ray3.2081-65[»]
    4DHCX-ray3.2081-65[»]
    4EJBX-ray3.5281-65[»]
    4EJCX-ray3.5281-65[»]
    4G5LX-ray3.3081-65[»]
    4G5NX-ray3.3081-65[»]
    4G5UX-ray3.1081-65[»]
    4G5WX-ray3.1081-65[»]
    4JUXX-ray2.8681-65[»]
    4K0MX-ray3.3082-64[»]
    4K0QX-ray3.3082-64[»]
    4NVVX-ray3.0081-65[»]
    4NVXX-ray3.0081-65[»]
    4NVZX-ray3.1081-65[»]
    4NW1X-ray3.1081-65[»]
    ProteinModelPortaliQ5SKU1.
    SMRiQ5SKU1. Positions 1-64.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ5SKU1.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L35P family.Curated

    Phylogenomic databases

    eggNOGiCOG0291.
    HOGENOMiHOG000040108.
    KOiK02916.
    OMAiRFSITAR.
    OrthoDBiEOG651T3B.
    PhylomeDBiQ5SKU1.

    Family and domain databases

    HAMAPiMF_00514. Ribosomal_L35.
    InterProiIPR021137. Ribosomal_L35.
    IPR018265. Ribosomal_L35_CS.
    IPR001706. Ribosomal_L35_non-mt.
    [Graphical view]
    PfamiPF01632. Ribosomal_L35p. 1 hit.
    [Graphical view]
    PRINTSiPR00064. RIBOSOMALL35.
    TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
    PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q5SKU1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPKMKTHKGA KKRVKITASG KVVAMKTGKR HLNWQKSGKE IRQKGRKFVL   50
    AKPEAERIKL LLPYE 65
    Length:65
    Mass (Da):7,484
    Last modified:January 23, 2007 - v3
    Checksum:i05D4C15C51166C43
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti65 – 651E → ER AA sequence 1 PublicationCurated

    Mass spectrometryi

    Molecular mass is 7354 Da from positions 2 - 65. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD70375.1.
    RefSeqiYP_143818.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD70375; BAD70375; BAD70375.
    GeneIDi3169498.
    KEGGittj:TTHA0552.
    PATRICi23956081. VBITheThe93045_0551.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD70375.1 .
    RefSeqi YP_143818.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1YL3 X-ray 5.50 8 1-63 [» ]
    2HGJ X-ray 5.00 7 1-65 [» ]
    2HGQ X-ray 5.50 7 1-65 [» ]
    2HGU X-ray 4.51 7 1-65 [» ]
    2J01 X-ray 2.80 8 1-65 [» ]
    2J03 X-ray 2.80 8 1-65 [» ]
    2WDI X-ray 3.30 8 1-65 [» ]
    2WDJ X-ray 3.30 8 1-65 [» ]
    2WDL X-ray 3.50 8 1-65 [» ]
    2WDN X-ray 3.50 8 1-65 [» ]
    2WH2 X-ray 3.45 8 1-65 [» ]
    2WH4 X-ray 3.45 8 1-65 [» ]
    2WRJ X-ray 3.60 8 1-65 [» ]
    2WRL X-ray 3.60 8 1-65 [» ]
    2WRO X-ray 3.60 8 1-65 [» ]
    2WRR X-ray 3.60 8 1-65 [» ]
    2X9S X-ray 3.10 8 1-65 [» ]
    2X9U X-ray 3.10 8 1-65 [» ]
    2XG0 X-ray 3.20 8 1-65 [» ]
    2XG2 X-ray 3.20 8 1-65 [» ]
    2XQE X-ray 3.10 8 1-65 [» ]
    2XTG electron microscopy 7.80 8 1-65 [» ]
    2XUX electron microscopy 7.60 8 1-65 [» ]
    2Y0V X-ray 3.10 8 1-65 [» ]
    2Y0X X-ray 3.10 8 1-65 [» ]
    2Y0Z X-ray 3.10 8 1-65 [» ]
    2Y11 X-ray 3.10 8 1-65 [» ]
    2Y13 X-ray 3.10 8 1-65 [» ]
    2Y15 X-ray 3.10 8 1-65 [» ]
    2Y17 X-ray 3.10 8 1-65 [» ]
    2Y19 X-ray 3.10 8 1-65 [» ]
    3FIN electron microscopy 6.40 8 2-65 [» ]
    3HUX X-ray 3.10 8 1-65 [» ]
    3HUZ X-ray 3.10 8 1-65 [» ]
    3I8F X-ray 3.10 8 1-65 [» ]
    3I8I X-ray 3.10 8 1-65 [» ]
    3I9C X-ray 3.50 8 1-65 [» ]
    3I9E X-ray 3.50 8 1-65 [» ]
    3KIR X-ray 3.30 8 1-65 [» ]
    3KIT X-ray 3.30 8 1-65 [» ]
    3KIW X-ray 3.60 8 1-65 [» ]
    3KIY X-ray 3.60 8 1-65 [» ]
    3KNI X-ray 3.00 8 1-65 [» ]
    3KNK X-ray 3.00 8 1-65 [» ]
    3KNM X-ray 3.45 8 1-65 [» ]
    3KNO X-ray 3.45 8 1-65 [» ]
    3OH5 X-ray 3.00 8 1-65 [» ]
    3OH7 X-ray 3.00 8 1-65 [» ]
    3OHJ X-ray 3.00 8 1-65 [» ]
    3OHK X-ray 3.00 8 1-65 [» ]
    3OHZ X-ray 3.00 8 1-65 [» ]
    3OI1 X-ray 3.00 8 1-65 [» ]
    3OI3 X-ray 3.10 8 1-65 [» ]
    3OI5 X-ray 3.10 8 1-65 [» ]
    3TVE X-ray 3.10 8 2-62 [» ]
    3TVH X-ray 3.10 8 2-62 [» ]
    3UXQ X-ray 3.20 8 1-65 [» ]
    3UXR X-ray 3.20 8 1-65 [» ]
    3UYE X-ray 3.00 8 1-65 [» ]
    3UYG X-ray 3.00 8 1-65 [» ]
    3UZ1 X-ray 3.30 8 1-65 [» ]
    3UZ2 X-ray 3.30 8 1-65 [» ]
    3UZ8 X-ray 3.00 8 1-65 [» ]
    3UZ9 X-ray 3.00 8 1-65 [» ]
    3UZF X-ray 3.30 8 1-65 [» ]
    3UZH X-ray 3.30 8 1-65 [» ]
    3UZK X-ray 3.30 8 1-65 [» ]
    3UZN X-ray 3.30 8 1-65 [» ]
    3V23 X-ray 3.00 8 1-65 [» ]
    3V25 X-ray 3.00 8 1-65 [» ]
    3V27 X-ray 3.10 8 1-65 [» ]
    3V29 X-ray 3.10 8 1-65 [» ]
    3V2D X-ray 2.70 8 1-65 [» ]
    3V2F X-ray 2.70 8 1-65 [» ]
    3V6W X-ray 3.90 8 1-65 [» ]
    3V6X X-ray 3.90 8 1-65 [» ]
    3ZN9 X-ray 3.10 8 1-65 [» ]
    3ZNE X-ray 3.10 8 1-65 [» ]
    3ZVP X-ray 3.80 8 1-65 [» ]
    4ABS X-ray 3.10 8 1-65 [» ]
    4B8G X-ray 3.70 8 1-65 [» ]
    4B8I X-ray 3.70 8 1-65 [» ]
    4BTD X-ray 2.95 8 2-65 [» ]
    4BYC X-ray 3.35 8 1-65 [» ]
    4BYE X-ray 3.35 8 1-65 [» ]
    4DHA X-ray 3.20 8 1-65 [» ]
    4DHC X-ray 3.20 8 1-65 [» ]
    4EJB X-ray 3.52 8 1-65 [» ]
    4EJC X-ray 3.52 8 1-65 [» ]
    4G5L X-ray 3.30 8 1-65 [» ]
    4G5N X-ray 3.30 8 1-65 [» ]
    4G5U X-ray 3.10 8 1-65 [» ]
    4G5W X-ray 3.10 8 1-65 [» ]
    4JUX X-ray 2.86 8 1-65 [» ]
    4K0M X-ray 3.30 8 2-64 [» ]
    4K0Q X-ray 3.30 8 2-64 [» ]
    4NVV X-ray 3.00 8 1-65 [» ]
    4NVX X-ray 3.00 8 1-65 [» ]
    4NVZ X-ray 3.10 8 1-65 [» ]
    4NW1 X-ray 3.10 8 1-65 [» ]
    ProteinModelPortali Q5SKU1.
    SMRi Q5SKU1. Positions 1-64.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA0552.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD70375 ; BAD70375 ; BAD70375 .
    GeneIDi 3169498.
    KEGGi ttj:TTHA0552.
    PATRICi 23956081. VBITheThe93045_0551.

    Phylogenomic databases

    eggNOGi COG0291.
    HOGENOMi HOG000040108.
    KOi K02916.
    OMAi RFSITAR.
    OrthoDBi EOG651T3B.
    PhylomeDBi Q5SKU1.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-577-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q5SKU1.

    Family and domain databases

    HAMAPi MF_00514. Ribosomal_L35.
    InterProi IPR021137. Ribosomal_L35.
    IPR018265. Ribosomal_L35_CS.
    IPR001706. Ribosomal_L35_non-mt.
    [Graphical view ]
    Pfami PF01632. Ribosomal_L35p. 1 hit.
    [Graphical view ]
    PRINTSi PR00064. RIBOSOMALL35.
    TIGRFAMsi TIGR00001. rpmI_bact. 1 hit.
    PROSITEi PS00936. RIBOSOMAL_L35. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    2. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
      Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
      Endocyt. Cell Res. 11:41-58(1995)
      Cited for: PROTEIN SEQUENCE OF 2-65.
    3. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
      Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
      Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-25.
    4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.

    Entry informationi

    Entry nameiRL35_THET8
    AccessioniPrimary (citable) accession number: Q5SKU1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 29, 2005
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 79 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3