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Protein

50S ribosomal protein L35

Gene

rpmI

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L35
Gene namesi
Name:rpmI
Ordered Locus Names:TTHA0552
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00001774432 – 6550S ribosomal protein L35Add BLAST64

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0552.

Structurei

Secondary structure

165
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi8 – 11Combined sources4
Beta strandi22 – 25Combined sources4
Beta strandi30 – 32Combined sources3
Beta strandi34 – 36Combined sources3
Helixi38 – 42Combined sources5
Beta strandi45 – 47Combined sources3
Helixi52 – 58Combined sources7
Turni61 – 63Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R8/Y81-65[»]
1VY4X-ray2.60B8/D81-65[»]
1VY5X-ray2.55B8/D81-65[»]
1VY6X-ray2.90B8/D81-65[»]
1VY7X-ray2.80B8/D81-65[»]
4L47X-ray3.22R8/Y81-65[»]
4L71X-ray3.90R8/Y81-65[»]
4LELX-ray3.90R8/Y81-65[»]
4LFZX-ray3.92R8/Y81-65[»]
4LNTX-ray2.94R8/Y81-65[»]
4LSKX-ray3.48R8/Y81-65[»]
4LT8X-ray3.14R8/Y81-65[»]
4P6FX-ray3.60R8/Y81-65[»]
4P70X-ray3.68R8/Y81-65[»]
4TUAX-ray3.60R8/Y81-65[»]
4TUBX-ray3.60R8/Y81-65[»]
4TUCX-ray3.60R8/Y81-65[»]
4TUDX-ray3.60R8/Y81-65[»]
4TUEX-ray3.50R8/Y81-65[»]
4V4PX-ray5.5081-63[»]
4V4XX-ray5.00B71-65[»]
4V4YX-ray5.50B71-65[»]
4V4ZX-ray4.51B71-65[»]
4V51X-ray2.80B8/D82-65[»]
4V5CX-ray3.30B8/D81-65[»]
4V5DX-ray3.50B8/D81-65[»]
4V5EX-ray3.45B8/D81-65[»]
4V5FX-ray3.60B8/D81-65[»]
4V5GX-ray3.60B8/D81-65[»]
4V5JX-ray3.10B8/D81-65[»]
4V5KX-ray3.20B8/D81-65[»]
4V5LX-ray3.10B81-65[»]
4V5Melectron microscopy7.80B81-65[»]
4V5Nelectron microscopy7.60B81-65[»]
4V5PX-ray3.10B8/D81-65[»]
4V5QX-ray3.10B8/D81-65[»]
4V5RX-ray3.10B8/D81-65[»]
4V5SX-ray3.10B8/D81-65[»]
4V68electron microscopy6.40B82-65[»]
4V6AX-ray3.10B8/D81-65[»]
4V6FX-ray3.10A8/D81-65[»]
4V6GX-ray3.50B8/D81-65[»]
4V7JX-ray3.30A8/B81-65[»]
4V7KX-ray3.60A8/B81-65[»]
4V7LX-ray3.00B8/D81-65[»]
4V7MX-ray3.45B8/D81-65[»]
4V7WX-ray3.00B8/D81-65[»]
4V7XX-ray3.00B8/D81-65[»]
4V7YX-ray3.00B8/D81-65[»]
4V7ZX-ray3.10B8/D81-65[»]
4V87X-ray3.10A8/D82-62[»]
4V8AX-ray3.20A8/B81-65[»]
4V8BX-ray3.00B8/D81-65[»]
4V8CX-ray3.30A8/B81-65[»]
4V8DX-ray3.00B8/D81-65[»]
4V8EX-ray3.30A8/C81-65[»]
4V8FX-ray3.30A8/D81-65[»]
4V8GX-ray3.00B8/D81-65[»]
4V8HX-ray3.10B8/D81-65[»]
4V8IX-ray2.70B8/D81-65[»]
4V8JX-ray3.90B8/D81-65[»]
4V8NX-ray3.10B8/D81-65[»]
4V8OX-ray3.80B81-65[»]
4V8QX-ray3.10A81-65[»]
4V8UX-ray3.70B8/D81-65[»]
4V8XX-ray3.35B8/D81-65[»]
4V90X-ray2.95B82-65[»]
4V95X-ray3.20B8/D81-65[»]
4V97X-ray3.52B8/D81-65[»]
4V9AX-ray3.30B8/D81-65[»]
4V9BX-ray3.10B8/D81-65[»]
4V9HX-ray2.86B81-65[»]
4V9IX-ray3.30B8/D82-64[»]
4V9RX-ray3.00B8/D81-65[»]
4V9SX-ray3.10B8/D81-65[»]
4W2EX-ray2.9081-65[»]
4W2FX-ray2.40B8/D81-65[»]
4W2GX-ray2.55B8/D81-65[»]
4W2HX-ray2.70B8/D81-65[»]
4W2IX-ray2.70B8/D81-65[»]
4W4GX-ray3.30R8/Y81-65[»]
4WPOX-ray2.80A8/C81-65[»]
4WQ1X-ray3.10M52-62[»]
Q81-65[»]
4WQFX-ray2.80A8/C81-65[»]
4WQRX-ray3.15M5/Q81-65[»]
4WQUX-ray2.80A8/C81-65[»]
4WQYX-ray2.80A8/C81-65[»]
4WR6X-ray3.05M5/Q81-65[»]
4WRAX-ray3.05M5/Q81-65[»]
4WROX-ray3.05Q81-65[»]
4WSDX-ray2.95M5/Q81-65[»]
4WSMX-ray3.30M5/Q81-65[»]
4WT1X-ray3.05M5/Q81-65[»]
4WT8X-ray3.40C9/D92-64[»]
4WU1X-ray3.20M5/Q81-65[»]
4WZDX-ray3.10M5/Q81-65[»]
4WZOX-ray3.30M5/Q81-65[»]
4Y4OX-ray2.3018/281-65[»]
4Y4PX-ray2.5018/281-65[»]
4YPBX-ray3.40R8/Y81-65[»]
4YZVX-ray3.10R8/Y81-65[»]
4Z3SX-ray2.6518/281-65[»]
4Z8CX-ray2.9018/281-65[»]
4ZERX-ray3.1018/282-65[»]
4ZSNX-ray3.60R8/Y81-65[»]
5A9Zelectron microscopy4.70Ae1-64[»]
5AA0electron microscopy5.00Ae1-64[»]
5CZPX-ray3.30R8/Y81-65[»]
5D8BX-ray3.63BA/XB1-65[»]
5DFEX-ray3.10R8/Y81-65[»]
5DOXX-ray3.1018/281-65[»]
5DOYX-ray2.6018/281-65[»]
5E7KX-ray3.20M5/Q81-65[»]
5E81X-ray2.95M5/Q81-65[»]
5EL4X-ray3.15M5/Q81-65[»]
5EL5X-ray3.15M5/Q81-65[»]
5EL6X-ray3.10M5/Q81-65[»]
5EL7X-ray3.15M5/Q81-65[»]
5F8KX-ray2.8018/282-65[»]
5FDUX-ray2.9018/282-65[»]
5FDVX-ray2.8018/282-65[»]
5HAUX-ray3.0016/261-65[»]
5HCPX-ray2.8918/281-65[»]
5HCQX-ray2.8018/281-65[»]
5HCRX-ray2.8018/281-65[»]
5HD1X-ray2.7018/281-65[»]
5IB7X-ray2.99M5/Q81-65[»]
5IB8X-ray3.13M5/Q81-65[»]
5IBBX-ray2.96M5/Q81-65[»]
5IMQelectron microscopy3.80z1-65[»]
5IMRelectron microscopy-z1-65[»]
5J30X-ray3.20R8/Y81-65[»]
5J3CX-ray3.04R8/Y81-65[»]
5J4BX-ray2.6018/281-65[»]
5J4CX-ray2.8018/281-65[»]
5J8BX-ray2.6081-65[»]
ProteinModelPortaliQ5SKU1.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SKU1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35P family.Curated

Phylogenomic databases

eggNOGiENOG410868C. Bacteria.
ENOG410ZYKZ. LUCA.
HOGENOMiHOG000040108.
KOiK02916.
OMAiHQNTGKS.
PhylomeDBiQ5SKU1.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35. 1 hit.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SKU1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKMKTHKGA KKRVKITASG KVVAMKTGKR HLNWQKSGKE IRQKGRKFVL
60
AKPEAERIKL LLPYE
Length:65
Mass (Da):7,484
Last modified:January 23, 2007 - v3
Checksum:i05D4C15C51166C43
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti65E → ER AA sequence (Ref. 2) Curated1

Mass spectrometryi

Molecular mass is 7354 Da from positions 2 - 65. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70375.1.
RefSeqiWP_011172638.1. NC_006461.1.
YP_143818.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70375; BAD70375; BAD70375.
GeneIDi3169498.
KEGGittj:TTHA0552.
PATRICi23956081. VBITheThe93045_0551.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70375.1.
RefSeqiWP_011172638.1. NC_006461.1.
YP_143818.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R8/Y81-65[»]
1VY4X-ray2.60B8/D81-65[»]
1VY5X-ray2.55B8/D81-65[»]
1VY6X-ray2.90B8/D81-65[»]
1VY7X-ray2.80B8/D81-65[»]
4L47X-ray3.22R8/Y81-65[»]
4L71X-ray3.90R8/Y81-65[»]
4LELX-ray3.90R8/Y81-65[»]
4LFZX-ray3.92R8/Y81-65[»]
4LNTX-ray2.94R8/Y81-65[»]
4LSKX-ray3.48R8/Y81-65[»]
4LT8X-ray3.14R8/Y81-65[»]
4P6FX-ray3.60R8/Y81-65[»]
4P70X-ray3.68R8/Y81-65[»]
4TUAX-ray3.60R8/Y81-65[»]
4TUBX-ray3.60R8/Y81-65[»]
4TUCX-ray3.60R8/Y81-65[»]
4TUDX-ray3.60R8/Y81-65[»]
4TUEX-ray3.50R8/Y81-65[»]
4V4PX-ray5.5081-63[»]
4V4XX-ray5.00B71-65[»]
4V4YX-ray5.50B71-65[»]
4V4ZX-ray4.51B71-65[»]
4V51X-ray2.80B8/D82-65[»]
4V5CX-ray3.30B8/D81-65[»]
4V5DX-ray3.50B8/D81-65[»]
4V5EX-ray3.45B8/D81-65[»]
4V5FX-ray3.60B8/D81-65[»]
4V5GX-ray3.60B8/D81-65[»]
4V5JX-ray3.10B8/D81-65[»]
4V5KX-ray3.20B8/D81-65[»]
4V5LX-ray3.10B81-65[»]
4V5Melectron microscopy7.80B81-65[»]
4V5Nelectron microscopy7.60B81-65[»]
4V5PX-ray3.10B8/D81-65[»]
4V5QX-ray3.10B8/D81-65[»]
4V5RX-ray3.10B8/D81-65[»]
4V5SX-ray3.10B8/D81-65[»]
4V68electron microscopy6.40B82-65[»]
4V6AX-ray3.10B8/D81-65[»]
4V6FX-ray3.10A8/D81-65[»]
4V6GX-ray3.50B8/D81-65[»]
4V7JX-ray3.30A8/B81-65[»]
4V7KX-ray3.60A8/B81-65[»]
4V7LX-ray3.00B8/D81-65[»]
4V7MX-ray3.45B8/D81-65[»]
4V7WX-ray3.00B8/D81-65[»]
4V7XX-ray3.00B8/D81-65[»]
4V7YX-ray3.00B8/D81-65[»]
4V7ZX-ray3.10B8/D81-65[»]
4V87X-ray3.10A8/D82-62[»]
4V8AX-ray3.20A8/B81-65[»]
4V8BX-ray3.00B8/D81-65[»]
4V8CX-ray3.30A8/B81-65[»]
4V8DX-ray3.00B8/D81-65[»]
4V8EX-ray3.30A8/C81-65[»]
4V8FX-ray3.30A8/D81-65[»]
4V8GX-ray3.00B8/D81-65[»]
4V8HX-ray3.10B8/D81-65[»]
4V8IX-ray2.70B8/D81-65[»]
4V8JX-ray3.90B8/D81-65[»]
4V8NX-ray3.10B8/D81-65[»]
4V8OX-ray3.80B81-65[»]
4V8QX-ray3.10A81-65[»]
4V8UX-ray3.70B8/D81-65[»]
4V8XX-ray3.35B8/D81-65[»]
4V90X-ray2.95B82-65[»]
4V95X-ray3.20B8/D81-65[»]
4V97X-ray3.52B8/D81-65[»]
4V9AX-ray3.30B8/D81-65[»]
4V9BX-ray3.10B8/D81-65[»]
4V9HX-ray2.86B81-65[»]
4V9IX-ray3.30B8/D82-64[»]
4V9RX-ray3.00B8/D81-65[»]
4V9SX-ray3.10B8/D81-65[»]
4W2EX-ray2.9081-65[»]
4W2FX-ray2.40B8/D81-65[»]
4W2GX-ray2.55B8/D81-65[»]
4W2HX-ray2.70B8/D81-65[»]
4W2IX-ray2.70B8/D81-65[»]
4W4GX-ray3.30R8/Y81-65[»]
4WPOX-ray2.80A8/C81-65[»]
4WQ1X-ray3.10M52-62[»]
Q81-65[»]
4WQFX-ray2.80A8/C81-65[»]
4WQRX-ray3.15M5/Q81-65[»]
4WQUX-ray2.80A8/C81-65[»]
4WQYX-ray2.80A8/C81-65[»]
4WR6X-ray3.05M5/Q81-65[»]
4WRAX-ray3.05M5/Q81-65[»]
4WROX-ray3.05Q81-65[»]
4WSDX-ray2.95M5/Q81-65[»]
4WSMX-ray3.30M5/Q81-65[»]
4WT1X-ray3.05M5/Q81-65[»]
4WT8X-ray3.40C9/D92-64[»]
4WU1X-ray3.20M5/Q81-65[»]
4WZDX-ray3.10M5/Q81-65[»]
4WZOX-ray3.30M5/Q81-65[»]
4Y4OX-ray2.3018/281-65[»]
4Y4PX-ray2.5018/281-65[»]
4YPBX-ray3.40R8/Y81-65[»]
4YZVX-ray3.10R8/Y81-65[»]
4Z3SX-ray2.6518/281-65[»]
4Z8CX-ray2.9018/281-65[»]
4ZERX-ray3.1018/282-65[»]
4ZSNX-ray3.60R8/Y81-65[»]
5A9Zelectron microscopy4.70Ae1-64[»]
5AA0electron microscopy5.00Ae1-64[»]
5CZPX-ray3.30R8/Y81-65[»]
5D8BX-ray3.63BA/XB1-65[»]
5DFEX-ray3.10R8/Y81-65[»]
5DOXX-ray3.1018/281-65[»]
5DOYX-ray2.6018/281-65[»]
5E7KX-ray3.20M5/Q81-65[»]
5E81X-ray2.95M5/Q81-65[»]
5EL4X-ray3.15M5/Q81-65[»]
5EL5X-ray3.15M5/Q81-65[»]
5EL6X-ray3.10M5/Q81-65[»]
5EL7X-ray3.15M5/Q81-65[»]
5F8KX-ray2.8018/282-65[»]
5FDUX-ray2.9018/282-65[»]
5FDVX-ray2.8018/282-65[»]
5HAUX-ray3.0016/261-65[»]
5HCPX-ray2.8918/281-65[»]
5HCQX-ray2.8018/281-65[»]
5HCRX-ray2.8018/281-65[»]
5HD1X-ray2.7018/281-65[»]
5IB7X-ray2.99M5/Q81-65[»]
5IB8X-ray3.13M5/Q81-65[»]
5IBBX-ray2.96M5/Q81-65[»]
5IMQelectron microscopy3.80z1-65[»]
5IMRelectron microscopy-z1-65[»]
5J30X-ray3.20R8/Y81-65[»]
5J3CX-ray3.04R8/Y81-65[»]
5J4BX-ray2.6018/281-65[»]
5J4CX-ray2.8018/281-65[»]
5J8BX-ray2.6081-65[»]
ProteinModelPortaliQ5SKU1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA0552.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD70375; BAD70375; BAD70375.
GeneIDi3169498.
KEGGittj:TTHA0552.
PATRICi23956081. VBITheThe93045_0551.

Phylogenomic databases

eggNOGiENOG410868C. Bacteria.
ENOG410ZYKZ. LUCA.
HOGENOMiHOG000040108.
KOiK02916.
OMAiHQNTGKS.
PhylomeDBiQ5SKU1.

Miscellaneous databases

EvolutionaryTraceiQ5SKU1.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35. 1 hit.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL35_THET8
AccessioniPrimary (citable) accession number: Q5SKU1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: November 30, 2016
This is version 101 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.