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Q5SKU1 (RL35_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L35
Gene names
Name:rpmI
Ordered Locus Names:TTHA0552
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length65 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L35P family.

Mass spectrometry

Molecular mass is 7354 Da from positions 2 - 65. Determined by MALDI. Ref.4

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Ref.2 Ref.3
Chain2 – 656450S ribosomal protein L35 HAMAP-Rule MF_00514
PRO_0000177443

Experimental info

Sequence conflict651E → ER AA sequence Ref.2

Secondary structure

.................... 65
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5SKU1 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 05D4C15C51166C43

FASTA657,484
        10         20         30         40         50         60 
MPKMKTHKGA KKRVKITASG KVVAMKTGKR HLNWQKSGKE IRQKGRKFVL AKPEAERIKL 


LLPYE 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
Endocyt. Cell Res. 11:41-58(1995)
Cited for: PROTEIN SEQUENCE OF 2-65.
[3]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-25.
[4]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008226 Genomic DNA. Translation: BAD70375.1.
RefSeqYP_143818.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1YL3X-ray5.5081-63[»]
2HGJX-ray5.0071-65[»]
2HGQX-ray5.5071-65[»]
2HGUX-ray4.5171-65[»]
2J01X-ray2.8081-65[»]
2J03X-ray2.8081-65[»]
2WDIX-ray3.3081-65[»]
2WDJX-ray3.3081-65[»]
2WDLX-ray3.5081-65[»]
2WDNX-ray3.5081-65[»]
2WH2X-ray3.4581-65[»]
2WH4X-ray3.4581-65[»]
2WRJX-ray3.6081-65[»]
2WRLX-ray3.6081-65[»]
2WROX-ray3.6081-65[»]
2WRRX-ray3.6081-65[»]
2X9SX-ray3.1081-65[»]
2X9UX-ray3.1081-65[»]
2XG0X-ray3.2081-65[»]
2XG2X-ray3.2081-65[»]
2XQEX-ray3.1081-65[»]
2XTGelectron microscopy7.8081-65[»]
2XUXelectron microscopy7.6081-65[»]
2Y0VX-ray3.1081-65[»]
2Y0XX-ray3.1081-65[»]
2Y0ZX-ray3.1081-65[»]
2Y11X-ray3.1081-65[»]
2Y13X-ray3.1081-65[»]
2Y15X-ray3.1081-65[»]
2Y17X-ray3.1081-65[»]
2Y19X-ray3.1081-65[»]
3FINelectron microscopy6.4082-65[»]
3HUXX-ray3.1081-65[»]
3HUZX-ray3.1081-65[»]
3I8FX-ray3.1081-65[»]
3I8IX-ray3.1081-65[»]
3I9CX-ray3.5081-65[»]
3I9EX-ray3.5081-65[»]
3KIRX-ray3.3081-65[»]
3KITX-ray3.3081-65[»]
3KIWX-ray3.6081-65[»]
3KIYX-ray3.6081-65[»]
3KNIX-ray3.0081-65[»]
3KNKX-ray3.0081-65[»]
3KNMX-ray3.4581-65[»]
3KNOX-ray3.4581-65[»]
3OH5X-ray3.0081-65[»]
3OH7X-ray3.0081-65[»]
3OHJX-ray3.0081-65[»]
3OHKX-ray3.0081-65[»]
3OHZX-ray3.0081-65[»]
3OI1X-ray3.0081-65[»]
3OI3X-ray3.1081-65[»]
3OI5X-ray3.1081-65[»]
3TVEX-ray3.1082-62[»]
3TVHX-ray3.1082-62[»]
3UXQX-ray3.2081-65[»]
3UXRX-ray3.2081-65[»]
3UYEX-ray3.0081-65[»]
3UYGX-ray3.0081-65[»]
3UZ1X-ray3.3081-65[»]
3UZ2X-ray3.3081-65[»]
3UZ8X-ray3.0081-65[»]
3UZ9X-ray3.0081-65[»]
3UZFX-ray3.3081-65[»]
3UZHX-ray3.3081-65[»]
3UZKX-ray3.3081-65[»]
3UZNX-ray3.3081-65[»]
3V23X-ray3.0081-65[»]
3V25X-ray3.0081-65[»]
3V27X-ray3.1081-65[»]
3V29X-ray3.1081-65[»]
3V2DX-ray2.7081-65[»]
3V2FX-ray2.7081-65[»]
3V6WX-ray3.9081-65[»]
3V6XX-ray3.9081-65[»]
3ZN9X-ray3.1081-65[»]
3ZNEX-ray3.1081-65[»]
3ZVPX-ray3.8081-65[»]
4ABSX-ray3.1081-65[»]
4B8GX-ray3.7081-65[»]
4B8IX-ray3.7081-65[»]
4BTDX-ray2.9582-65[»]
4BYCX-ray3.3581-65[»]
4BYEX-ray3.3581-65[»]
4DHAX-ray3.2081-65[»]
4DHCX-ray3.2081-65[»]
4EJBX-ray3.5281-65[»]
4EJCX-ray3.5281-65[»]
4G5LX-ray3.3081-65[»]
4G5NX-ray3.3081-65[»]
4G5UX-ray3.1081-65[»]
4G5WX-ray3.1081-65[»]
4JUXX-ray2.8681-65[»]
4K0MX-ray3.3082-64[»]
4K0QX-ray3.3082-64[»]
ProteinModelPortalQ5SKU1.
SMRQ5SKU1. Positions 1-64.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA0552.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD70375; BAD70375; BAD70375.
GeneID3169498.
KEGGttj:TTHA0552.
PATRIC23956081. VBITheThe93045_0551.

Phylogenomic databases

eggNOGCOG0291.
HOGENOMHOG000040108.
KOK02916.
OMAHQNTGKS.
OrthoDBEOG651T3B.
ProtClustDBPRK00172.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-577-MONOMER.

Family and domain databases

HAMAPMF_00514. Ribosomal_L35.
InterProIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSPR00064. RIBOSOMALL35.
TIGRFAMsTIGR00001. rpmI_bact. 1 hit.
PROSITEPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ5SKU1.

Entry information

Entry nameRL35_THET8
AccessionPrimary (citable) accession number: Q5SKU1
Entry history
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: February 19, 2014
This is version 76 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references