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Q5SKU1

- RL35_THET8

UniProt

Q5SKU1 - RL35_THET8

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Protein

50S ribosomal protein L35

Gene

rpmI

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-577-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L35
Gene namesi
Name:rpmI
Ordered Locus Names:TTHA0552
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed2 Publications
Chaini2 – 656450S ribosomal protein L35PRO_0000177443Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0552.

Structurei

Secondary structure

1
65
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi8 – 114
Beta strandi14 – 163
Beta strandi18 – 203
Beta strandi22 – 254
Turni27 – 315
Beta strandi34 – 363
Helixi38 – 436
Beta strandi46 – 494
Helixi52 – 609
Turni61 – 633

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVMX-ray3.2281-65[»]
1VVOX-ray3.2281-65[»]
1VVQX-ray3.9081-65[»]
1VVSX-ray3.9081-65[»]
1VVUX-ray3.9081-65[»]
1VVWX-ray3.9081-65[»]
1VVYX-ray3.9281-65[»]
1VW0X-ray3.9281-65[»]
1VX9X-ray2.9481-65[»]
1VXJX-ray2.9481-65[»]
1VXLX-ray3.4881-65[»]
1VXNX-ray3.4881-65[»]
1VXQX-ray3.1481-65[»]
1VXTX-ray3.1481-65[»]
1VY1X-ray3.6881-65[»]
1VY3X-ray3.6881-65[»]
1YL3X-ray5.5081-63[»]
2HGJX-ray5.0071-65[»]
2HGQX-ray5.5071-65[»]
2HGUX-ray4.5171-65[»]
2J01X-ray2.8081-65[»]
2J03X-ray2.8081-65[»]
2WDIX-ray3.3081-65[»]
2WDJX-ray3.3081-65[»]
2WDLX-ray3.5081-65[»]
2WDNX-ray3.5081-65[»]
2WH2X-ray3.4581-65[»]
2WH4X-ray3.4581-65[»]
2WRJX-ray3.6081-65[»]
2WRLX-ray3.6081-65[»]
2WROX-ray3.6081-65[»]
2WRRX-ray3.6081-65[»]
2X9SX-ray3.1081-65[»]
2X9UX-ray3.1081-65[»]
2XG0X-ray3.2081-65[»]
2XG2X-ray3.2081-65[»]
2XQEX-ray3.1081-65[»]
2XTGelectron microscopy7.8081-65[»]
2XUXelectron microscopy7.6081-65[»]
2Y0VX-ray3.1081-65[»]
2Y0XX-ray3.1081-65[»]
2Y0ZX-ray3.1081-65[»]
2Y11X-ray3.1081-65[»]
2Y13X-ray3.1081-65[»]
2Y15X-ray3.1081-65[»]
2Y17X-ray3.1081-65[»]
2Y19X-ray3.1081-65[»]
3FINelectron microscopy6.4082-65[»]
3HUXX-ray3.1081-65[»]
3HUZX-ray3.1081-65[»]
3I8FX-ray3.1081-65[»]
3I8IX-ray3.1081-65[»]
3I9CX-ray3.5081-65[»]
3I9EX-ray3.5081-65[»]
3KIRX-ray3.3081-65[»]
3KITX-ray3.3081-65[»]
3KIWX-ray3.6081-65[»]
3KIYX-ray3.6081-65[»]
3KNIX-ray3.0081-65[»]
3KNKX-ray3.0081-65[»]
3KNMX-ray3.4581-65[»]
3KNOX-ray3.4581-65[»]
3OH5X-ray3.0081-65[»]
3OH7X-ray3.0081-65[»]
3OHJX-ray3.0081-65[»]
3OHKX-ray3.0081-65[»]
3OHZX-ray3.0081-65[»]
3OI1X-ray3.0081-65[»]
3OI3X-ray3.1081-65[»]
3OI5X-ray3.1081-65[»]
3TVEX-ray3.1082-62[»]
3TVHX-ray3.1082-62[»]
3UXQX-ray3.2081-65[»]
3UXRX-ray3.2081-65[»]
3UYEX-ray3.0081-65[»]
3UYGX-ray3.0081-65[»]
3UZ1X-ray3.3081-65[»]
3UZ2X-ray3.3081-65[»]
3UZ8X-ray3.0081-65[»]
3UZ9X-ray3.0081-65[»]
3UZFX-ray3.3081-65[»]
3UZHX-ray3.3081-65[»]
3UZKX-ray3.3081-65[»]
3UZNX-ray3.3081-65[»]
3V23X-ray3.0081-65[»]
3V25X-ray3.0081-65[»]
3V27X-ray3.1081-65[»]
3V29X-ray3.1081-65[»]
3V2DX-ray2.7081-65[»]
3V2FX-ray2.7081-65[»]
3V6WX-ray3.9081-65[»]
3V6XX-ray3.9081-65[»]
3ZN9X-ray3.1081-65[»]
3ZNEX-ray3.1081-65[»]
3ZVPX-ray3.8081-65[»]
4ABSX-ray3.1081-65[»]
4B8GX-ray3.7081-65[»]
4B8IX-ray3.7081-65[»]
4BTDX-ray2.9582-65[»]
4BYCX-ray3.3581-65[»]
4BYEX-ray3.3581-65[»]
4DHAX-ray3.2081-65[»]
4DHCX-ray3.2081-65[»]
4EJBX-ray3.5281-65[»]
4EJCX-ray3.5281-65[»]
4G5LX-ray3.3081-65[»]
4G5NX-ray3.3081-65[»]
4G5UX-ray3.1081-65[»]
4G5WX-ray3.1081-65[»]
4JUXX-ray2.8681-65[»]
4K0MX-ray3.3082-64[»]
4K0QX-ray3.3082-64[»]
4KX0X-ray3.4481-65[»]
4KX2X-ray3.4481-65[»]
4NVVX-ray3.0081-65[»]
4NVXX-ray3.0081-65[»]
4NVZX-ray3.1081-65[»]
4NW1X-ray3.1081-65[»]
4QCNX-ray2.6081-65[»]
4QCPX-ray2.6081-65[»]
4QCRX-ray2.5581-65[»]
4QCTX-ray2.5581-65[»]
4QCVX-ray2.9081-65[»]
4QCXX-ray2.9081-65[»]
4QCZX-ray2.8081-65[»]
4QD1X-ray2.8081-65[»]
ProteinModelPortaliQ5SKU1.
SMRiQ5SKU1. Positions 1-64.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SKU1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35P family.Curated

Phylogenomic databases

eggNOGiCOG0291.
HOGENOMiHOG000040108.
KOiK02916.
OMAiRFSITAR.
OrthoDBiEOG651T3B.
PhylomeDBiQ5SKU1.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SKU1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPKMKTHKGA KKRVKITASG KVVAMKTGKR HLNWQKSGKE IRQKGRKFVL
60
AKPEAERIKL LLPYE
Length:65
Mass (Da):7,484
Last modified:January 23, 2007 - v3
Checksum:i05D4C15C51166C43
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti65 – 651E → ER AA sequence 1 PublicationCurated

Mass spectrometryi

Molecular mass is 7354 Da from positions 2 - 65. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD70375.1.
RefSeqiYP_143818.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70375; BAD70375; BAD70375.
GeneIDi3169498.
KEGGittj:TTHA0552.
PATRICi23956081. VBITheThe93045_0551.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD70375.1 .
RefSeqi YP_143818.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VVM X-ray 3.22 8 1-65 [» ]
1VVO X-ray 3.22 8 1-65 [» ]
1VVQ X-ray 3.90 8 1-65 [» ]
1VVS X-ray 3.90 8 1-65 [» ]
1VVU X-ray 3.90 8 1-65 [» ]
1VVW X-ray 3.90 8 1-65 [» ]
1VVY X-ray 3.92 8 1-65 [» ]
1VW0 X-ray 3.92 8 1-65 [» ]
1VX9 X-ray 2.94 8 1-65 [» ]
1VXJ X-ray 2.94 8 1-65 [» ]
1VXL X-ray 3.48 8 1-65 [» ]
1VXN X-ray 3.48 8 1-65 [» ]
1VXQ X-ray 3.14 8 1-65 [» ]
1VXT X-ray 3.14 8 1-65 [» ]
1VY1 X-ray 3.68 8 1-65 [» ]
1VY3 X-ray 3.68 8 1-65 [» ]
1YL3 X-ray 5.50 8 1-63 [» ]
2HGJ X-ray 5.00 7 1-65 [» ]
2HGQ X-ray 5.50 7 1-65 [» ]
2HGU X-ray 4.51 7 1-65 [» ]
2J01 X-ray 2.80 8 1-65 [» ]
2J03 X-ray 2.80 8 1-65 [» ]
2WDI X-ray 3.30 8 1-65 [» ]
2WDJ X-ray 3.30 8 1-65 [» ]
2WDL X-ray 3.50 8 1-65 [» ]
2WDN X-ray 3.50 8 1-65 [» ]
2WH2 X-ray 3.45 8 1-65 [» ]
2WH4 X-ray 3.45 8 1-65 [» ]
2WRJ X-ray 3.60 8 1-65 [» ]
2WRL X-ray 3.60 8 1-65 [» ]
2WRO X-ray 3.60 8 1-65 [» ]
2WRR X-ray 3.60 8 1-65 [» ]
2X9S X-ray 3.10 8 1-65 [» ]
2X9U X-ray 3.10 8 1-65 [» ]
2XG0 X-ray 3.20 8 1-65 [» ]
2XG2 X-ray 3.20 8 1-65 [» ]
2XQE X-ray 3.10 8 1-65 [» ]
2XTG electron microscopy 7.80 8 1-65 [» ]
2XUX electron microscopy 7.60 8 1-65 [» ]
2Y0V X-ray 3.10 8 1-65 [» ]
2Y0X X-ray 3.10 8 1-65 [» ]
2Y0Z X-ray 3.10 8 1-65 [» ]
2Y11 X-ray 3.10 8 1-65 [» ]
2Y13 X-ray 3.10 8 1-65 [» ]
2Y15 X-ray 3.10 8 1-65 [» ]
2Y17 X-ray 3.10 8 1-65 [» ]
2Y19 X-ray 3.10 8 1-65 [» ]
3FIN electron microscopy 6.40 8 2-65 [» ]
3HUX X-ray 3.10 8 1-65 [» ]
3HUZ X-ray 3.10 8 1-65 [» ]
3I8F X-ray 3.10 8 1-65 [» ]
3I8I X-ray 3.10 8 1-65 [» ]
3I9C X-ray 3.50 8 1-65 [» ]
3I9E X-ray 3.50 8 1-65 [» ]
3KIR X-ray 3.30 8 1-65 [» ]
3KIT X-ray 3.30 8 1-65 [» ]
3KIW X-ray 3.60 8 1-65 [» ]
3KIY X-ray 3.60 8 1-65 [» ]
3KNI X-ray 3.00 8 1-65 [» ]
3KNK X-ray 3.00 8 1-65 [» ]
3KNM X-ray 3.45 8 1-65 [» ]
3KNO X-ray 3.45 8 1-65 [» ]
3OH5 X-ray 3.00 8 1-65 [» ]
3OH7 X-ray 3.00 8 1-65 [» ]
3OHJ X-ray 3.00 8 1-65 [» ]
3OHK X-ray 3.00 8 1-65 [» ]
3OHZ X-ray 3.00 8 1-65 [» ]
3OI1 X-ray 3.00 8 1-65 [» ]
3OI3 X-ray 3.10 8 1-65 [» ]
3OI5 X-ray 3.10 8 1-65 [» ]
3TVE X-ray 3.10 8 2-62 [» ]
3TVH X-ray 3.10 8 2-62 [» ]
3UXQ X-ray 3.20 8 1-65 [» ]
3UXR X-ray 3.20 8 1-65 [» ]
3UYE X-ray 3.00 8 1-65 [» ]
3UYG X-ray 3.00 8 1-65 [» ]
3UZ1 X-ray 3.30 8 1-65 [» ]
3UZ2 X-ray 3.30 8 1-65 [» ]
3UZ8 X-ray 3.00 8 1-65 [» ]
3UZ9 X-ray 3.00 8 1-65 [» ]
3UZF X-ray 3.30 8 1-65 [» ]
3UZH X-ray 3.30 8 1-65 [» ]
3UZK X-ray 3.30 8 1-65 [» ]
3UZN X-ray 3.30 8 1-65 [» ]
3V23 X-ray 3.00 8 1-65 [» ]
3V25 X-ray 3.00 8 1-65 [» ]
3V27 X-ray 3.10 8 1-65 [» ]
3V29 X-ray 3.10 8 1-65 [» ]
3V2D X-ray 2.70 8 1-65 [» ]
3V2F X-ray 2.70 8 1-65 [» ]
3V6W X-ray 3.90 8 1-65 [» ]
3V6X X-ray 3.90 8 1-65 [» ]
3ZN9 X-ray 3.10 8 1-65 [» ]
3ZNE X-ray 3.10 8 1-65 [» ]
3ZVP X-ray 3.80 8 1-65 [» ]
4ABS X-ray 3.10 8 1-65 [» ]
4B8G X-ray 3.70 8 1-65 [» ]
4B8I X-ray 3.70 8 1-65 [» ]
4BTD X-ray 2.95 8 2-65 [» ]
4BYC X-ray 3.35 8 1-65 [» ]
4BYE X-ray 3.35 8 1-65 [» ]
4DHA X-ray 3.20 8 1-65 [» ]
4DHC X-ray 3.20 8 1-65 [» ]
4EJB X-ray 3.52 8 1-65 [» ]
4EJC X-ray 3.52 8 1-65 [» ]
4G5L X-ray 3.30 8 1-65 [» ]
4G5N X-ray 3.30 8 1-65 [» ]
4G5U X-ray 3.10 8 1-65 [» ]
4G5W X-ray 3.10 8 1-65 [» ]
4JUX X-ray 2.86 8 1-65 [» ]
4K0M X-ray 3.30 8 2-64 [» ]
4K0Q X-ray 3.30 8 2-64 [» ]
4KX0 X-ray 3.44 8 1-65 [» ]
4KX2 X-ray 3.44 8 1-65 [» ]
4NVV X-ray 3.00 8 1-65 [» ]
4NVX X-ray 3.00 8 1-65 [» ]
4NVZ X-ray 3.10 8 1-65 [» ]
4NW1 X-ray 3.10 8 1-65 [» ]
4QCN X-ray 2.60 8 1-65 [» ]
4QCP X-ray 2.60 8 1-65 [» ]
4QCR X-ray 2.55 8 1-65 [» ]
4QCT X-ray 2.55 8 1-65 [» ]
4QCV X-ray 2.90 8 1-65 [» ]
4QCX X-ray 2.90 8 1-65 [» ]
4QCZ X-ray 2.80 8 1-65 [» ]
4QD1 X-ray 2.80 8 1-65 [» ]
ProteinModelPortali Q5SKU1.
SMRi Q5SKU1. Positions 1-64.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA0552.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD70375 ; BAD70375 ; BAD70375 .
GeneIDi 3169498.
KEGGi ttj:TTHA0552.
PATRICi 23956081. VBITheThe93045_0551.

Phylogenomic databases

eggNOGi COG0291.
HOGENOMi HOG000040108.
KOi K02916.
OMAi RFSITAR.
OrthoDBi EOG651T3B.
PhylomeDBi Q5SKU1.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-577-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5SKU1.

Family and domain databases

HAMAPi MF_00514. Ribosomal_L35.
InterProi IPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view ]
Pfami PF01632. Ribosomal_L35p. 1 hit.
[Graphical view ]
PRINTSi PR00064. RIBOSOMALL35.
TIGRFAMsi TIGR00001. rpmI_bact. 1 hit.
PROSITEi PS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
    Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
    Endocyt. Cell Res. 11:41-58(1995)
    Cited for: PROTEIN SEQUENCE OF 2-65.
  3. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-25.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.

Entry informationi

Entry nameiRL35_THET8
AccessioniPrimary (citable) accession number: Q5SKU1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 80 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3