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Protein

50S ribosomal protein L35

Gene

rpmI

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-569-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L35
Gene namesi
Name:rpmI
Ordered Locus Names:TTHA0552
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00001774432 – 6550S ribosomal protein L35Add BLAST64

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0552

Structurei

Secondary structure

165
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi8 – 11Combined sources4
Beta strandi22 – 25Combined sources4
Beta strandi30 – 32Combined sources3
Beta strandi34 – 36Combined sources3
Helixi38 – 42Combined sources5
Beta strandi45 – 47Combined sources3
Helixi52 – 58Combined sources7
Turni61 – 63Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R8/Y81-65[»]
1VY4X-ray2.60B8/D81-65[»]
1VY5X-ray2.55B8/D81-65[»]
1VY6X-ray2.90B8/D81-65[»]
1VY7X-ray2.80B8/D81-65[»]
4L47X-ray3.22R8/Y81-65[»]
4L71X-ray3.90R8/Y81-65[»]
4LELX-ray3.90R8/Y81-65[»]
4LFZX-ray3.92R8/Y81-65[»]
4LNTX-ray2.94R8/Y81-65[»]
4LSKX-ray3.48R8/Y81-65[»]
4LT8X-ray3.14R8/Y81-65[»]
4P6FX-ray3.60R8/Y81-65[»]
4P70X-ray3.68R8/Y81-65[»]
4TUAX-ray3.60R8/Y81-65[»]
4TUBX-ray3.60R8/Y81-65[»]
4TUCX-ray3.60R8/Y81-65[»]
4TUDX-ray3.60R8/Y81-65[»]
4TUEX-ray3.50R8/Y81-65[»]
4V4PX-ray5.5081-63[»]
4V4XX-ray5.00B71-65[»]
4V4YX-ray5.50B71-65[»]
4V4ZX-ray4.51B71-65[»]
4V51X-ray2.80B8/D82-65[»]
4V5CX-ray3.30B8/D81-65[»]
4V5DX-ray3.50B8/D81-65[»]
4V5EX-ray3.45B8/D81-65[»]
4V5FX-ray3.60B8/D81-65[»]
4V5GX-ray3.60B8/D81-65[»]
4V5JX-ray3.10B8/D81-65[»]
4V5KX-ray3.20B8/D81-65[»]
4V5LX-ray3.10B81-65[»]
4V5Melectron microscopy7.80B81-65[»]
4V5Nelectron microscopy7.60B81-65[»]
4V5PX-ray3.10B8/D81-65[»]
4V5QX-ray3.10B8/D81-65[»]
4V5RX-ray3.10B8/D81-65[»]
4V5SX-ray3.10B8/D81-65[»]
4V68electron microscopy6.40B82-65[»]
4V6AX-ray3.10B8/D81-65[»]
4V6FX-ray3.10A8/D81-65[»]
4V6GX-ray3.50B8/D81-65[»]
4V7JX-ray3.30A8/B81-65[»]
4V7KX-ray3.60A8/B81-65[»]
4V7LX-ray3.00B8/D81-65[»]
4V7MX-ray3.45B8/D81-65[»]
4V7WX-ray3.00B8/D81-65[»]
4V7XX-ray3.00B8/D81-65[»]
4V7YX-ray3.00B8/D81-65[»]
4V7ZX-ray3.10B8/D81-65[»]
4V87X-ray3.10A8/D82-62[»]
4V8AX-ray3.20A8/B81-65[»]
4V8BX-ray3.00B8/D81-65[»]
4V8CX-ray3.30A8/B81-65[»]
4V8DX-ray3.00B8/D81-65[»]
4V8EX-ray3.30A8/C81-65[»]
4V8FX-ray3.30A8/D81-65[»]
4V8GX-ray3.00B8/D81-65[»]
4V8HX-ray3.10B8/D81-65[»]
4V8IX-ray2.70B8/D81-65[»]
4V8JX-ray3.90B8/D81-65[»]
4V8NX-ray3.10B8/D81-65[»]
4V8OX-ray3.80B81-65[»]
4V8QX-ray3.10A81-65[»]
4V8UX-ray3.70B8/D81-65[»]
4V8XX-ray3.35B8/D81-65[»]
4V90X-ray2.95B82-65[»]
4V95X-ray3.20B8/D81-65[»]
4V97X-ray3.52B8/D81-65[»]
4V9AX-ray3.30B8/D81-65[»]
4V9BX-ray3.10B8/D81-65[»]
4V9HX-ray2.86B81-65[»]
4V9IX-ray3.30B8/D82-64[»]
4V9RX-ray3.00B8/D81-65[»]
4V9SX-ray3.10B8/D81-65[»]
4W2EX-ray2.9081-65[»]
4W2FX-ray2.40B8/D81-65[»]
4W2GX-ray2.55B8/D81-65[»]
4W2HX-ray2.70B8/D81-65[»]
4W2IX-ray2.70B8/D81-65[»]
4W4GX-ray3.30R8/Y81-65[»]
4WPOX-ray2.80A8/C81-65[»]
4WQ1X-ray3.10M52-62[»]
Q81-65[»]
4WQFX-ray2.80A8/C81-65[»]
4WQRX-ray3.15M5/Q81-65[»]
4WQUX-ray2.80A8/C81-65[»]
4WQYX-ray2.80A8/C81-65[»]
4WR6X-ray3.05M5/Q81-65[»]
4WRAX-ray3.05M5/Q81-65[»]
4WROX-ray3.05Q81-65[»]
4WSDX-ray2.95M5/Q81-65[»]
4WSMX-ray3.30M5/Q81-65[»]
4WT1X-ray3.05M5/Q81-65[»]
4WT8X-ray3.40C9/D92-64[»]
4WU1X-ray3.20M5/Q81-65[»]
4WZDX-ray3.10M5/Q81-65[»]
4WZOX-ray3.30M5/Q81-65[»]
4Y4OX-ray2.3018/281-65[»]
4Y4PX-ray2.5018/281-65[»]
4YPBX-ray3.40R8/Y81-65[»]
4YZVX-ray3.10R8/Y81-65[»]
4Z3SX-ray2.6518/281-65[»]
4Z8CX-ray2.9018/281-65[»]
4ZERX-ray3.1018/282-65[»]
4ZSNX-ray3.60R8/Y81-65[»]
5A9Zelectron microscopy4.70Ae1-64[»]
5AA0electron microscopy5.00Ae1-64[»]
5CZPX-ray3.30R8/Y81-65[»]
5D8BX-ray3.63BA/XB1-65[»]
5DFEX-ray3.10R8/Y81-65[»]
5DOXX-ray3.1018/281-65[»]
5DOYX-ray2.6018/281-65[»]
5E7KX-ray3.20M5/Q81-65[»]
5E81X-ray2.95M5/Q81-65[»]
5EL4X-ray3.15M5/Q81-65[»]
5EL5X-ray3.15M5/Q81-65[»]
5EL6X-ray3.10M5/Q81-65[»]
5EL7X-ray3.15M5/Q81-65[»]
5F8KX-ray2.8018/282-65[»]
5FDUX-ray2.9018/282-65[»]
5FDVX-ray2.8018/282-65[»]
5HAUX-ray3.0016/261-65[»]
5HCPX-ray2.8918/281-65[»]
5HCQX-ray2.8018/281-65[»]
5HCRX-ray2.8018/281-65[»]
5HD1X-ray2.7018/281-65[»]
5IB7X-ray2.99M5/Q81-65[»]
5IB8X-ray3.13M5/Q81-65[»]
5IBBX-ray2.96M5/Q81-65[»]
5IMQelectron microscopy3.80z1-65[»]
5IMRelectron microscopy-z1-65[»]
5J30X-ray3.20R8/Y81-65[»]
5J3CX-ray3.04R8/Y81-65[»]
5J4BX-ray2.6018/281-65[»]
5J4CX-ray2.8018/281-65[»]
5J8BX-ray2.6081-65[»]
5NDKX-ray2.95M5/Q81-65[»]
5OT7electron microscopy3.80d2-65[»]
5UQ7electron microscopy3.5082-65[»]
5UQ8electron microscopy3.2082-65[»]
5VP2X-ray2.8018/281-65[»]
5W4KX-ray2.7018/281-65[»]
5WISX-ray2.7018/281-65[»]
5WITX-ray2.6018/281-65[»]
6C5LX-ray3.20B8/D81-65[»]
6CFJX-ray2.8018/281-65[»]
6CFKX-ray2.7018/281-65[»]
6CFLX-ray2.6018/281-65[»]
6FKRX-ray3.2018/282-65[»]
ProteinModelPortaliQ5SKU1
SMRiQ5SKU1
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SKU1

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG410868C Bacteria
ENOG410ZYKZ LUCA
HOGENOMiHOG000040108
KOiK02916
OMAiHLNWHKS
PhylomeDBiQ5SKU1

Family and domain databases

HAMAPiMF_00514 Ribosomal_L35, 1 hit
InterProiView protein in InterPro
IPR021137 Ribosomal_L35
IPR018265 Ribosomal_L35_CS
IPR001706 Ribosomal_L35_non-mt
IPR037229 Ribosomal_L35_sf
PANTHERiPTHR33343 PTHR33343, 1 hit
PfamiView protein in Pfam
PF01632 Ribosomal_L35p, 1 hit
PRINTSiPR00064 RIBOSOMALL35
SUPFAMiSSF143034 SSF143034, 1 hit
TIGRFAMsiTIGR00001 rpmI_bact, 1 hit
PROSITEiView protein in PROSITE
PS00936 RIBOSOMAL_L35, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SKU1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKMKTHKGA KKRVKITASG KVVAMKTGKR HLNWQKSGKE IRQKGRKFVL
60
AKPEAERIKL LLPYE
Length:65
Mass (Da):7,484
Last modified:January 23, 2007 - v3
Checksum:i05D4C15C51166C43
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti65E → ER AA sequence (Ref. 2) Curated1

Mass spectrometryi

Molecular mass is 7354 Da from positions 2 - 65. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA Translation: BAD70375.1
RefSeqiWP_011172638.1, NC_006461.1
YP_143818.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD70375; BAD70375; BAD70375
GeneIDi3169498
KEGGittj:TTHA0552
PATRICifig|300852.9.peg.551

Similar proteinsi

Entry informationi

Entry nameiRL35_THET8
AccessioniPrimary (citable) accession number: Q5SKU1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: May 23, 2018
This is version 112 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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