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Protein

Uridine kinase

Gene

udk

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

ATP + uridine = ADP + UMP.UniRule annotation
ATP + cytidine = ADP + CMP.UniRule annotation

Pathwayi: CTP biosynthesis via salvage pathway

This protein is involved in step 1 of the subpathway that synthesizes CTP from cytidine.UniRule annotation
Proteins known to be involved in the 3 steps of the subpathway in this organism are:
  1. Uridine kinase (udk)
  2. no protein annotated in this organism
  3. no protein annotated in this organism
This subpathway is part of the pathway CTP biosynthesis via salvage pathway, which is itself part of Pyrimidine metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes CTP from cytidine, the pathway CTP biosynthesis via salvage pathway and in Pyrimidine metabolism.

Pathwayi: UMP biosynthesis via salvage pathway

This protein is involved in step 1 of the subpathway that synthesizes UMP from uridine.UniRule annotation
Proteins known to be involved in this subpathway in this organism are:
  1. Uridine kinase (udk)
This subpathway is part of the pathway UMP biosynthesis via salvage pathway, which is itself part of Pyrimidine metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes UMP from uridine, the pathway UMP biosynthesis via salvage pathway and in Pyrimidine metabolism.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi13 – 20ATPUniRule annotation8

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BRENDAi2.7.1.48. 2305.
UniPathwayiUPA00574; UER00637.
UPA00579; UER00640.

Names & Taxonomyi

Protein namesi
Recommended name:
Uridine kinaseUniRule annotation (EC:2.7.1.48UniRule annotation)
Alternative name(s):
Cytidine monophosphokinaseUniRule annotation
Uridine monophosphokinaseUniRule annotation
Gene namesi
Name:udkUniRule annotation
Ordered Locus Names:TTHA0578
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000819781 – 211Uridine kinaseAdd BLAST211

Interactioni

Protein-protein interaction databases

STRINGi300852.TTHA0578.

Structurei

Secondary structure

1211
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi7 – 14Combined sources8
Helixi19 – 30Combined sources12
Helixi31 – 33Combined sources3
Beta strandi34 – 38Combined sources5
Helixi39 – 41Combined sources3
Helixi51 – 56Combined sources6
Helixi62 – 64Combined sources3
Helixi67 – 78Combined sources12
Beta strandi83 – 89Combined sources7
Turni90 – 93Combined sources4
Beta strandi94 – 102Combined sources9
Beta strandi106 – 112Combined sources7
Turni113 – 116Combined sources4
Helixi119 – 122Combined sources4
Beta strandi126 – 132Combined sources7
Helixi135 – 149Combined sources15
Helixi154 – 163Combined sources10
Helixi165 – 171Combined sources7
Helixi174 – 179Combined sources6
Beta strandi181 – 186Combined sources6
Helixi191 – 209Combined sources19

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ASYX-ray2.40A/B1-211[»]
3ASZX-ray2.25A/B1-211[»]
3W34X-ray1.91A/B1-211[»]
3W8RX-ray2.50A/B1-211[»]
ProteinModelPortaliQ5SKR5.
SMRiQ5SKR5.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SKR5.

Family & Domainsi

Sequence similaritiesi

Belongs to the uridine kinase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DBI. Bacteria.
COG0572. LUCA.
HOGENOMiHOG000262756.
KOiK00876.
OMAiHPSAFEW.
PhylomeDBiQ5SKR5.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00551. Uridine_kinase. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR006083. PRK/URK.
IPR000764. Uridine_kinase-like.
IPR026008. Uridine_kinase_.
[Graphical view]
PfamiPF00485. PRK. 1 hit.
[Graphical view]
PRINTSiPR00988. URIDINKINASE.
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00235. udk. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5SKR5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAPKPFVIG IAGGTASGKT TLAQALARTL GERVALLPMD HYYKDLGHLP
60 70 80 90 100
LEERLRVNYD HPDAFDLALY LEHAQALLRG LPVEMPVYDF RAYTRSPRRT
110 120 130 140 150
PVRPAPVVIL EGILVLYPKE LRDLMDLKVF VDADADERFI RRLKRDVLER
160 170 180 190 200
GRSLEGVVAQ YLEQVKPMHL HFVEPTKRYA DVIVPRGGQN PVALEMLAAK
210
ALARLARMGA A
Length:211
Mass (Da):23,674
Last modified:December 21, 2004 - v1
Checksum:i8A64A64FF033E6B0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70401.1.
RefSeqiWP_011172663.1. NC_006461.1.
YP_143844.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70401; BAD70401; BAD70401.
GeneIDi3168643.
KEGGittj:TTHA0578.
PATRICi23956133. VBITheThe93045_0577.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70401.1.
RefSeqiWP_011172663.1. NC_006461.1.
YP_143844.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ASYX-ray2.40A/B1-211[»]
3ASZX-ray2.25A/B1-211[»]
3W34X-ray1.91A/B1-211[»]
3W8RX-ray2.50A/B1-211[»]
ProteinModelPortaliQ5SKR5.
SMRiQ5SKR5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA0578.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD70401; BAD70401; BAD70401.
GeneIDi3168643.
KEGGittj:TTHA0578.
PATRICi23956133. VBITheThe93045_0577.

Phylogenomic databases

eggNOGiENOG4105DBI. Bacteria.
COG0572. LUCA.
HOGENOMiHOG000262756.
KOiK00876.
OMAiHPSAFEW.
PhylomeDBiQ5SKR5.

Enzyme and pathway databases

UniPathwayiUPA00574; UER00637.
UPA00579; UER00640.
BRENDAi2.7.1.48. 2305.

Miscellaneous databases

EvolutionaryTraceiQ5SKR5.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00551. Uridine_kinase. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR006083. PRK/URK.
IPR000764. Uridine_kinase-like.
IPR026008. Uridine_kinase_.
[Graphical view]
PfamiPF00485. PRK. 1 hit.
[Graphical view]
PRINTSiPR00988. URIDINKINASE.
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00235. udk. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiURK_THET8
AccessioniPrimary (citable) accession number: Q5SKR5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: December 21, 2004
Last modified: November 2, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.