Q5SJV1 (Q5SJV1_THET8) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribosome-binding factor A EMBL BAD70730.1

Gene names

Ordered Locus Names:

TTHA0907

Organism

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Taxonomic identifier

300852 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus

Protein attributes

Sequence length	95 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 2R1C PDB 2DYJ Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	rRNA processing Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5SJV1 [UniParc]. Last modified December 21, 2004. Version 1. Checksum: 2807A8979E74A3C9	FASTA	95	10,857
	10 20 30 40 50 60 MAYGKAHLEA QLKRALAEEI QALEDPRLFL LTVEAVRLSK DGSVLSVYVE AFREEEGALR 70 80 90 ALSRAERRLV AALARRVRMR RLPRLEFLPW RASPA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Thermus thermophilus HB8." Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S. Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HB8 / ATCC 27634 / DSM 579.
[2]	"Structural aspects of RbfA action during small ribosomal subunit assembly." Datta P.P., Wilson D.N., Kawazoe M., Swami N.K., Kaminishi T., Sharma M.R., Booth T.M., Takemoto C., Fucini P., Yokoyama S., Agrawal R.K. Mol. Cell 28:434-445(2007) [PubMed: 17996707] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.84 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AP008226 Genomic DNA. Translation: BAD70730.1.

RefSeq

YP_144173.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2DYJ	X-ray	1.84	A/B	1-95	[»]
2R1C	electron microscopy	-	A	1-95	[»]

ProteinModelPortal

Q5SJV1.

SMR

Q5SJV1. Positions 4-94.

ModBase

Search...

Protein-protein interaction databases

STRING

Q5SJV1.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

3169952.

GenomeReviews

Gene locus TTHA0907 in contig AP008226_GR.

KEGG

ttj:TTHA0907.

PATRIC

23956794. VBITheThe93045_0899.

Phylogenomic databases

HOGENOM

HBG244803.

OMA

RTPTLEF.

ProtClustDB

CLSK738533.

Enzyme and pathway databases

BioCyc

TTHE300852:TTHA0907-MONOMER.

Family and domain databases

InterPro

IPR015946. KH_dom-like_a/b.
IPR000238. Ribosome-bd_facA.
IPR023799. Ribosome-bd_facA_dom.
[Graphical view]

Gene3D

G3DSA:3.30.300.20. KH_prok. 1 hit.

KO

K02834.

Pfam

PF02033. RBFA. 1 hit.
[Graphical view]

ProDom

PD007327. Rib_bd_factA. 1 hit.
[Graphical view] [Entries sharing at least one domain]

SUPFAM

SSF89919. Rib_bd_factA. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q5SJV1_THET8

Accession

Primary (citable) accession number: Q5SJV1

Entry history

Integrated into UniProtKB/TrEMBL:	December 21, 2004
Last sequence update:	December 21, 2004
Last modified:	December 14, 2011
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)