Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Ribosome maturation factor RimM

Gene

rimM

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Chaperone

Keywords - Biological processi

Ribosome biogenesis

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1065-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation factor RimMUniRule annotation
Gene namesi
Name:rimMUniRule annotation
Ordered Locus Names:TTHA1033
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 162162Ribosome maturation factor RimMPRO_0000163380Add
BLAST

Interactioni

Subunit structurei

Binds ribosomal protein S19.

Protein-protein interaction databases

STRINGi300852.TTHA1033.

Structurei

Secondary structure

1
162
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 1210Combined sources
Beta strandi14 – 174Combined sources
Beta strandi19 – 235Combined sources
Helixi25 – 295Combined sources
Beta strandi31 – 355Combined sources
Turni36 – 383Combined sources
Beta strandi39 – 4911Combined sources
Beta strandi52 – 576Combined sources
Helixi63 – 675Combined sources
Turni68 – 714Combined sources
Beta strandi73 – 775Combined sources
Helixi78 – 803Combined sources
Helixi91 – 944Combined sources
Beta strandi98 – 1014Combined sources
Beta strandi104 – 11512Combined sources
Beta strandi118 – 1258Combined sources
Helixi130 – 1323Combined sources
Beta strandi136 – 1394Combined sources
Beta strandi145 – 1473Combined sources
Beta strandi152 – 1543Combined sources
Turni158 – 1603Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2DOGNMR-A1-85[»]
2DYIX-ray2.00A1-162[»]
3A1PX-ray2.30A/C1-162[»]
ProteinModelPortaliQ5SJH5.
SMRiQ5SJH5. Positions 1-162.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SJH5.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini86 – 16075PRC barrelUniRule annotationAdd
BLAST

Domaini

The PRC barrel domain binds ribosomal protein S19.

Sequence similaritiesi

Belongs to the RimM family.UniRule annotation
Contains 1 PRC barrel domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4106GF2. Bacteria.
COG0806. LUCA.
HOGENOMiHOG000220991.
KOiK02860.
OMAiLQAPYVE.
OrthoDBiEOG6SBT2K.
PhylomeDBiQ5SJH5.

Family and domain databases

Gene3Di2.40.30.60. 1 hit.
HAMAPiMF_00014. Ribosome_mat_RimM.
InterProiIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMiSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5SJH5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLVEIGRFG APYALKGGLR FRGEPVVLHL ERVYVEGHGW RAIEDLYRVG
60 70 80 90 100
EELVVHLAGV TDRTLAEALV GLRVYAEVAD LPPLEEGRYY YFALIGLPVY
110 120 130 140 150
VEGRQVGEVV DILDAGAQDV LIIRGVGERL RDRAERLVPL QAPYVRVEEG
160
SIHVDPIPGL FD
Length:162
Mass (Da):18,073
Last modified:December 21, 2004 - v1
Checksum:iE3ABCD7DD3430DF8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70856.1.
RefSeqiWP_011228392.1. NC_006461.1.
YP_144299.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70856; BAD70856; BAD70856.
GeneIDi3170094.
KEGGittj:TTHA1033.
PATRICi23957026. VBITheThe93045_1013.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70856.1.
RefSeqiWP_011228392.1. NC_006461.1.
YP_144299.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2DOGNMR-A1-85[»]
2DYIX-ray2.00A1-162[»]
3A1PX-ray2.30A/C1-162[»]
ProteinModelPortaliQ5SJH5.
SMRiQ5SJH5. Positions 1-162.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA1033.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD70856; BAD70856; BAD70856.
GeneIDi3170094.
KEGGittj:TTHA1033.
PATRICi23957026. VBITheThe93045_1013.

Phylogenomic databases

eggNOGiENOG4106GF2. Bacteria.
COG0806. LUCA.
HOGENOMiHOG000220991.
KOiK02860.
OMAiLQAPYVE.
OrthoDBiEOG6SBT2K.
PhylomeDBiQ5SJH5.

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1065-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ5SJH5.

Family and domain databases

Gene3Di2.40.30.60. 1 hit.
HAMAPiMF_00014. Ribosome_mat_RimM.
InterProiIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMiSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. Cited for: STRUCTURE BY NMR OF 1-85, INTERACTION WITH S19.
  3. "Crystal structure of 16s ribosomal RNA processing protein RimM from Thermus thermophilus HB8."
    RIKEN structural genomics initiative (RSGI)
    Submitted (MAR-2007) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS).

Entry informationi

Entry nameiRIMM_THET8
AccessioniPrimary (citable) accession number: Q5SJH5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: December 21, 2004
Last modified: December 9, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.