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Q5SJH3 (RS16_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
30S ribosomal protein S16
Gene names
Name:rpsP
Ordered Locus Names:TTHA1035
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length88 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Binds to the lower part of the body of the 30S subunit, where it stabilizes two of its domains. HAMAP-Rule MF_00385

Subunit structure

Part of the 30S ribosomal subunit. Ref.4 Ref.5 Ref.6 Ref.7 Ref.9 Ref.10 Ref.12 Ref.13

Sequence similarities

Belongs to the ribosomal protein S16P family.

Mass spectrometry

Molecular mass is 10387 Da from positions 1 - 88. Determined by MALDI. Ref.3

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 888830S ribosomal protein S16 HAMAP-Rule MF_00385
PRO_0000167269

Secondary structure

1 ...................... 88
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5SJH3 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: F8E45F06816EA96F

FASTA8810,387
        10         20         30         40         50         60 
MVKIRLARFG SKHNPHYRIV VTDARRKRDG KYIEKIGYYD PRKTTPDWLK VDVERARYWL 

        70         80 
SVGAQPTDTA RRLLRQAGVF RQEAREGA

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Purification and characterization of the 30S ribosomal proteins from the bacterium Thermus thermophilus."
Tsiboli P., Herfurth E., Choli T.
Eur. J. Biochem. 226:169-177(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-28.
[3]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[4]"Structure of the 30S ribosomal subunit."
Wimberly B.T., Brodersen D.E., Clemons W.M. Jr., Morgan-Warren R.J., Carter A.P., Vonrhein C., Hartsch T., Ramakrishnan V.
Nature 407:327-339(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.
[5]"Structure of functionally activated small ribosomal subunit at 3.3 A resolution."
Schluenzen F., Tocilj A., Zarivach R., Harms J., Gluehmann M., Janell D., Bashan A., Bartels H., Agmon I., Franceschi F., Yonath A.
Cell 102:615-623(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
[6]"The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit."
Brodersen D.E., Clemons W.M. Jr., Carter A.P., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
Cell 103:1143-1154(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
[7]"Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics."
Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
Nature 407:340-348(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 30S SUBUNIT.
[8]"The path of messenger RNA through the ribosome."
Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[9]"Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3."
Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F.
EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
[10]"Crystal structure of an initiation factor bound to the 30S ribosomal subunit."
Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Hartsch T., Wimberly B.T., Ramakrishnan V.
Science 291:498-501(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
[11]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
[12]"Recognition of cognate transfer RNA by the 30S ribosomal subunit."
Ogle J.M., Brodersen D.E., Clemons W.M. Jr., Tarry M.J., Carter A.P., Ramakrishnan V.
Science 292:897-902(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.11 ANGSTROMS) OF THE 30S SUBUNIT.
[13]"Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16S RNA."
Brodersen D.E., Clemons W.M. Jr., Carter A.P., Wimberly B.T., Ramakrishnan V.
J. Mol. Biol. 316:725-768(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008226 Genomic DNA. Translation: BAD70858.1.
RefSeqYP_144301.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00P1-88[»]
1GIXX-ray5.50S1-88[»]
1HNWX-ray3.40P1-88[»]
1HNXX-ray3.40P1-88[»]
1HNZX-ray3.30P1-88[»]
1HR0X-ray3.20P1-88[»]
1I94X-ray3.20P1-88[»]
1I95X-ray4.50P1-88[»]
1I96X-ray4.20P1-88[»]
1I97X-ray4.50P1-88[»]
1IBKX-ray3.31P1-88[»]
1IBLX-ray3.11P1-88[»]
1IBMX-ray3.31P1-88[»]
1J5EX-ray3.05P1-88[»]
1JGOX-ray5.60S1-88[»]
1JGPX-ray7.00S1-88[»]
1JGQX-ray5.00S1-88[»]
1L1Umodel-P1-83[»]
1N32X-ray3.00P1-88[»]
1N33X-ray3.35P1-88[»]
1N34X-ray3.80P1-88[»]
1N36X-ray3.65P1-88[»]
1XMOX-ray3.25P1-88[»]
1XMQX-ray3.00P1-88[»]
1XNQX-ray3.05P1-88[»]
1XNRX-ray3.10P1-88[»]
1YL4X-ray5.50S1-88[»]
2B64X-ray5.90P1-88[»]
2B9MX-ray6.76P1-88[»]
2B9OX-ray6.46P1-88[»]
2E5LX-ray3.30P1-88[»]
2F4VX-ray3.80P1-88[»]
2HGIX-ray5.00S1-88[»]
2HGPX-ray5.50S1-88[»]
2HGRX-ray4.51S1-88[»]
2HHHX-ray3.35P1-88[»]
2J00X-ray2.80P1-88[»]
2J02X-ray2.80P1-88[»]
2OW8X-ray3.71q-[»]
2UU9X-ray3.10P1-88[»]
2UUAX-ray2.90P1-88[»]
2UUBX-ray2.90P1-88[»]
2UUCX-ray3.10P1-88[»]
2UXBX-ray3.10P1-88[»]
2UXCX-ray2.90P1-88[»]
2UXDX-ray3.20P1-88[»]
2V46X-ray3.80P1-88[»]
2V48X-ray3.80P1-88[»]
2VQEX-ray2.50P1-88[»]
2VQFX-ray2.90P1-88[»]
2WDGX-ray3.30P1-88[»]
2WDHX-ray3.30P1-88[»]
2WDKX-ray3.50P1-88[»]
2WDMX-ray3.50P1-88[»]
2WH1X-ray3.45P1-88[»]
2WH3X-ray3.45P1-88[»]
2WRIX-ray3.60P1-88[»]
2WRKX-ray3.60P1-88[»]
2WRNX-ray3.60P1-88[»]
2WRQX-ray3.60P1-88[»]
2X9RX-ray3.10P1-88[»]
2X9TX-ray3.10P1-88[»]
2XFZX-ray3.20P1-88[»]
2XG1X-ray3.20P1-88[»]
2XQDX-ray3.10P1-88[»]
2XSYelectron microscopy7.80P1-88[»]
2XUYelectron microscopy7.60P1-88[»]
2Y0UX-ray3.10P1-88[»]
2Y0WX-ray3.10P1-88[»]
2Y0YX-ray3.10P1-88[»]
2Y10X-ray3.10P1-88[»]
2Y12X-ray3.10P1-88[»]
2Y14X-ray3.10P1-88[»]
2Y16X-ray3.10P1-88[»]
2Y18X-ray3.10P1-88[»]
2ZM6X-ray3.30P1-88[»]
3FICelectron microscopy6.40P1-84[»]
3HUWX-ray3.10P1-88[»]
3HUYX-ray3.10P1-88[»]
3I8GX-ray3.10S1-88[»]
3I8HX-ray3.10S1-88[»]
3I9BX-ray3.50S1-88[»]
3I9DX-ray3.50S1-88[»]
3KIQX-ray3.30p1-88[»]
3KISX-ray3.30p1-88[»]
3KIUX-ray3.60p1-88[»]
3KIXX-ray3.60p1-88[»]
3KNHX-ray3.00P1-88[»]
3KNJX-ray3.15P1-88[»]
3KNLX-ray3.45P1-88[»]
3KNNX-ray3.45P1-88[»]
3OGEX-ray3.00P1-88[»]
3OGYX-ray3.00P1-88[»]
3OHCX-ray3.00P1-88[»]
3OHDX-ray3.00P1-88[»]
3OHYX-ray3.00P1-88[»]
3OI0X-ray3.00P1-88[»]
3OI2X-ray3.10P1-88[»]
3OI4X-ray3.10P1-88[»]
3OTOX-ray3.69P1-88[»]
3T1HX-ray3.11P1-88[»]
3T1YX-ray2.80P1-88[»]
3TVFX-ray3.10S1-88[»]
3TVGX-ray3.10S1-88[»]
3UXSX-ray3.20P1-88[»]
3UXTX-ray3.20P1-88[»]
3UYDX-ray3.00S1-88[»]
3UYFX-ray3.00S1-88[»]
3UZ3X-ray3.30S1-88[»]
3UZ4X-ray3.30S1-88[»]
3UZ6X-ray3.00S1-88[»]
3UZ7X-ray3.00S1-88[»]
3UZGX-ray3.30S1-88[»]
3UZIX-ray3.30S1-88[»]
3UZLX-ray3.30S1-88[»]
3UZMX-ray3.30S1-88[»]
3V22X-ray3.00P1-88[»]
3V24X-ray3.00P1-88[»]
3V26X-ray3.10P1-88[»]
3V28X-ray3.10P1-88[»]
3V2CX-ray2.70P1-88[»]
3V2EX-ray2.70P1-88[»]
3ZVOX-ray3.80P1-88[»]
4ABRX-ray3.10P1-88[»]
4AQYX-ray3.50P1-88[»]
4DH9X-ray3.20P1-88[»]
4DHBX-ray3.20P1-88[»]
4DR1X-ray3.60P1-88[»]
4DR2X-ray3.25P1-88[»]
4DR3X-ray3.35P1-88[»]
4DR4X-ray3.97P1-88[»]
4DR5X-ray3.45P1-88[»]
4DR6X-ray3.30P1-88[»]
4DR7X-ray3.75P1-88[»]
4DUYX-ray3.39P1-88[»]
4DUZX-ray3.65P1-88[»]
4DV0X-ray3.85P1-88[»]
4DV1X-ray3.85P1-88[»]
4DV2X-ray3.65P1-88[»]
4DV3X-ray3.55P1-88[»]
4DV4X-ray3.65P1-88[»]
4DV5X-ray3.68P1-88[»]
4DV6X-ray3.30P1-88[»]
4DV7X-ray3.29P1-88[»]
4G5KX-ray3.30S1-88[»]
4G5MX-ray3.30S1-88[»]
4G5TX-ray3.10S1-88[»]
4G5VX-ray3.10S1-88[»]
ProteinModelPortalQ5SJH3.
SMRQ5SJH3. Positions 1-88.
ModBaseSearch...

Protein-protein interaction databases

STRING300852.TTHA1035.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD70858; BAD70858; BAD70858.
GeneID3170114.
KEGGttj:TTHA1035.
PATRIC23957030. VBITheThe93045_1015.

Phylogenomic databases

eggNOGCOG0228.
HOGENOMHOG000246720.
KOK02959.
OMADLARVDH.
ProtClustDBPRK00040.

Family and domain databases

Gene3D3.30.1320.10. 1 hit.
HAMAPMF_00385. Ribosomal_S16.
InterProIPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERPTHR12919. PTHR12919. 1 hit.
PfamPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMSSF54565. Ribosomal_S16. 1 hit.
TIGRFAMsTIGR00002. S16. 1 hit.
PROSITEPS00732. RIBOSOMAL_S16. False negative.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ5SJH3.

Entry information

Entry nameRS16_THET8
AccessionPrimary (citable) accession number: Q5SJH3
Entry history
Integrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: December 21, 2004
Last modified: May 1, 2013
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·Documents