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Q5SJE1

- RL31_THET8

UniProt

Q5SJE1 - RL31_THET8

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Protein

50S ribosomal protein L31

Gene

rpmE

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Binds the 23S rRNA.UniRule annotation

Cofactori

Binds 1 zinc ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi16 – 161ZincUniRule annotation
Metal bindingi18 – 181ZincUniRule annotation
Metal bindingi36 – 361ZincUniRule annotation
Metal bindingi39 – 391ZincUniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. rRNA binding Source: UniProtKB-KW
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, RNA-binding, rRNA-binding, Zinc

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1105-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L31UniRule annotation
Gene namesi
Name:rpmEUniRule annotation
Ordered Locus Names:TTHA1073
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 717150S ribosomal protein L31PRO_0000173171Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi300852.TTHA1073.

Structurei

Secondary structure

1
71
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 64
Beta strandi10 – 167
Beta strandi17 – 193
Beta strandi21 – 3414
Turni37 – 393
Beta strandi40 – 445
Turni47 – 526
Beta strandi56 – 594
Turni61 – 644
Beta strandi65 – 673
Helixi68 – 703

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVMX-ray3.2241-71[»]
1VVOX-ray3.2241-71[»]
1VVQX-ray3.9041-71[»]
1VVSX-ray3.9041-71[»]
1VVUX-ray3.9041-71[»]
1VVWX-ray3.9041-71[»]
1VVYX-ray3.9241-71[»]
1VW0X-ray3.9241-71[»]
1VX9X-ray2.9441-71[»]
1VXJX-ray2.9441-71[»]
1VXLX-ray3.4841-71[»]
1VXNX-ray3.4841-71[»]
1VXQX-ray3.1441-71[»]
1VXTX-ray3.1441-71[»]
1VY1X-ray3.6841-71[»]
1VY3X-ray3.6841-71[»]
1YL3X-ray5.50448-70[»]
2HGJX-ray5.0031-71[»]
2HGQX-ray5.5031-71[»]
2HGUX-ray4.5131-71[»]
2J01X-ray2.8041-71[»]
2J03X-ray2.8041-71[»]
2V47X-ray3.8041-71[»]
2V49X-ray3.8041-71[»]
2WDIX-ray3.3041-71[»]
2WDJX-ray3.3041-71[»]
2WDLX-ray3.5041-71[»]
2WDNX-ray3.5041-71[»]
2WH2X-ray3.4541-71[»]
2WH4X-ray3.45410-39[»]
2WRJX-ray3.6041-71[»]
2WRLX-ray3.6041-71[»]
2WROX-ray3.6041-71[»]
2WRRX-ray3.6041-71[»]
2X9SX-ray3.1041-71[»]
2X9UX-ray3.1041-71[»]
2XG0X-ray3.2041-71[»]
2XG2X-ray3.2041-71[»]
2XQEX-ray3.1041-71[»]
2XTGelectron microscopy7.8041-71[»]
2XUXelectron microscopy7.6041-71[»]
2Y0VX-ray3.1041-71[»]
2Y0XX-ray3.1041-71[»]
2Y0ZX-ray3.1041-71[»]
2Y11X-ray3.1041-71[»]
2Y13X-ray3.1041-71[»]
2Y15X-ray3.1041-71[»]
2Y17X-ray3.1041-71[»]
2Y19X-ray3.1041-71[»]
3FINelectron microscopy6.4041-50[»]
3HUXX-ray3.1041-71[»]
3HUZX-ray3.1041-71[»]
3I8FX-ray3.1041-71[»]
3I8IX-ray3.1041-71[»]
3I9CX-ray3.5041-71[»]
3I9EX-ray3.5041-71[»]
3KIRX-ray3.3041-71[»]
3KITX-ray3.3041-71[»]
3KIWX-ray3.6041-71[»]
3KIYX-ray3.6041-71[»]
3KNIX-ray3.0041-71[»]
3KNKX-ray3.0041-71[»]
3KNMX-ray3.4541-71[»]
3KNOX-ray3.4541-71[»]
3OH5X-ray3.0041-71[»]
3OH7X-ray3.0041-71[»]
3OHJX-ray3.0041-71[»]
3OHKX-ray3.0041-71[»]
3OHZX-ray3.0041-71[»]
3OI1X-ray3.0041-71[»]
3OI3X-ray3.1041-71[»]
3OI5X-ray3.1041-71[»]
3TVEX-ray3.1041-66[»]
3TVHX-ray3.1041-63[»]
3UXQX-ray3.2041-71[»]
3UXRX-ray3.2041-71[»]
3UYEX-ray3.0041-71[»]
3UYGX-ray3.0041-71[»]
3UZ1X-ray3.3041-71[»]
3UZ2X-ray3.3041-71[»]
3UZ8X-ray3.0041-71[»]
3UZ9X-ray3.0041-71[»]
3UZFX-ray3.3041-71[»]
3UZHX-ray3.3041-71[»]
3UZKX-ray3.3041-71[»]
3UZNX-ray3.3041-71[»]
3V23X-ray3.0041-71[»]
3V25X-ray3.0041-71[»]
3V27X-ray3.1041-71[»]
3V29X-ray3.1041-71[»]
3V2DX-ray2.7041-71[»]
3V2FX-ray2.7041-71[»]
3V6WX-ray3.9041-71[»]
3V6XX-ray3.9041-71[»]
3ZN9X-ray3.1041-71[»]
3ZNEX-ray3.1041-71[»]
3ZVPX-ray3.8041-71[»]
4ABSX-ray3.1041-71[»]
4B8GX-ray3.7041-71[»]
4B8IX-ray3.7041-71[»]
4BTDX-ray2.9541-71[»]
4BYCX-ray3.3541-71[»]
4BYEX-ray3.3541-71[»]
4DHAX-ray3.2041-71[»]
4DHCX-ray3.2041-71[»]
4EJBX-ray3.5241-71[»]
4EJCX-ray3.5241-71[»]
4G5LX-ray3.3041-71[»]
4G5NX-ray3.3041-71[»]
4G5UX-ray3.1041-71[»]
4G5WX-ray3.1041-71[»]
4JUXX-ray2.8641-71[»]
4K0MX-ray3.30410-39[»]
4K0QX-ray3.30410-39[»]
4KX0X-ray3.4441-71[»]
4KX2X-ray3.4441-71[»]
4NVVX-ray3.0041-71[»]
4NVXX-ray3.0041-71[»]
4NVZX-ray3.1041-71[»]
4NW1X-ray3.1041-71[»]
4QCNX-ray2.6041-71[»]
4QCPX-ray2.6041-71[»]
4QCRX-ray2.5541-71[»]
4QCTX-ray2.5541-71[»]
4QCVX-ray2.9041-71[»]
4QCXX-ray2.9041-71[»]
4QCZX-ray2.8041-71[»]
4QD1X-ray2.8041-71[»]
ProteinModelPortaliQ5SJE1.
SMRiQ5SJE1. Positions 1-71.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SJE1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L31P family. Type A subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0254.
HOGENOMiHOG000284895.
KOiK02909.
OMAiTANCSCG.
OrthoDBiEOG6DVJZM.
PhylomeDBiQ5SJE1.

Family and domain databases

HAMAPiMF_00501. Ribosomal_L31_1.
InterProiIPR002150. Ribosomal_L31.
IPR027491. Ribosomal_L31_A.
[Graphical view]
PfamiPF01197. Ribosomal_L31. 1 hit.
[Graphical view]
PRINTSiPR01249. RIBOSOMALL31.
TIGRFAMsiTIGR00105. L31. 1 hit.
PROSITEiPS01143. RIBOSOMAL_L31. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SJE1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKEGIHPKLV PARIICGCGN VIETYSTKPE IYVEVCSKCH PFYTGQQRFV
60 70
DTEGRVERFQ RRYGDSYRKG R
Length:71
Mass (Da):8,286
Last modified:December 21, 2004 - v1
Checksum:i1172052DBDBA687A
GO

Mass spectrometryi

Molecular mass is 8287 Da from positions 1 - 71. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD70896.1.
RefSeqiYP_144339.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70896; BAD70896; BAD70896.
GeneIDi3168247.
KEGGittj:TTHA1073.
PATRICi23957106. VBITheThe93045_1053.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD70896.1 .
RefSeqi YP_144339.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VVM X-ray 3.22 4 1-71 [» ]
1VVO X-ray 3.22 4 1-71 [» ]
1VVQ X-ray 3.90 4 1-71 [» ]
1VVS X-ray 3.90 4 1-71 [» ]
1VVU X-ray 3.90 4 1-71 [» ]
1VVW X-ray 3.90 4 1-71 [» ]
1VVY X-ray 3.92 4 1-71 [» ]
1VW0 X-ray 3.92 4 1-71 [» ]
1VX9 X-ray 2.94 4 1-71 [» ]
1VXJ X-ray 2.94 4 1-71 [» ]
1VXL X-ray 3.48 4 1-71 [» ]
1VXN X-ray 3.48 4 1-71 [» ]
1VXQ X-ray 3.14 4 1-71 [» ]
1VXT X-ray 3.14 4 1-71 [» ]
1VY1 X-ray 3.68 4 1-71 [» ]
1VY3 X-ray 3.68 4 1-71 [» ]
1YL3 X-ray 5.50 4 48-70 [» ]
2HGJ X-ray 5.00 3 1-71 [» ]
2HGQ X-ray 5.50 3 1-71 [» ]
2HGU X-ray 4.51 3 1-71 [» ]
2J01 X-ray 2.80 4 1-71 [» ]
2J03 X-ray 2.80 4 1-71 [» ]
2V47 X-ray 3.80 4 1-71 [» ]
2V49 X-ray 3.80 4 1-71 [» ]
2WDI X-ray 3.30 4 1-71 [» ]
2WDJ X-ray 3.30 4 1-71 [» ]
2WDL X-ray 3.50 4 1-71 [» ]
2WDN X-ray 3.50 4 1-71 [» ]
2WH2 X-ray 3.45 4 1-71 [» ]
2WH4 X-ray 3.45 4 10-39 [» ]
2WRJ X-ray 3.60 4 1-71 [» ]
2WRL X-ray 3.60 4 1-71 [» ]
2WRO X-ray 3.60 4 1-71 [» ]
2WRR X-ray 3.60 4 1-71 [» ]
2X9S X-ray 3.10 4 1-71 [» ]
2X9U X-ray 3.10 4 1-71 [» ]
2XG0 X-ray 3.20 4 1-71 [» ]
2XG2 X-ray 3.20 4 1-71 [» ]
2XQE X-ray 3.10 4 1-71 [» ]
2XTG electron microscopy 7.80 4 1-71 [» ]
2XUX electron microscopy 7.60 4 1-71 [» ]
2Y0V X-ray 3.10 4 1-71 [» ]
2Y0X X-ray 3.10 4 1-71 [» ]
2Y0Z X-ray 3.10 4 1-71 [» ]
2Y11 X-ray 3.10 4 1-71 [» ]
2Y13 X-ray 3.10 4 1-71 [» ]
2Y15 X-ray 3.10 4 1-71 [» ]
2Y17 X-ray 3.10 4 1-71 [» ]
2Y19 X-ray 3.10 4 1-71 [» ]
3FIN electron microscopy 6.40 4 1-50 [» ]
3HUX X-ray 3.10 4 1-71 [» ]
3HUZ X-ray 3.10 4 1-71 [» ]
3I8F X-ray 3.10 4 1-71 [» ]
3I8I X-ray 3.10 4 1-71 [» ]
3I9C X-ray 3.50 4 1-71 [» ]
3I9E X-ray 3.50 4 1-71 [» ]
3KIR X-ray 3.30 4 1-71 [» ]
3KIT X-ray 3.30 4 1-71 [» ]
3KIW X-ray 3.60 4 1-71 [» ]
3KIY X-ray 3.60 4 1-71 [» ]
3KNI X-ray 3.00 4 1-71 [» ]
3KNK X-ray 3.00 4 1-71 [» ]
3KNM X-ray 3.45 4 1-71 [» ]
3KNO X-ray 3.45 4 1-71 [» ]
3OH5 X-ray 3.00 4 1-71 [» ]
3OH7 X-ray 3.00 4 1-71 [» ]
3OHJ X-ray 3.00 4 1-71 [» ]
3OHK X-ray 3.00 4 1-71 [» ]
3OHZ X-ray 3.00 4 1-71 [» ]
3OI1 X-ray 3.00 4 1-71 [» ]
3OI3 X-ray 3.10 4 1-71 [» ]
3OI5 X-ray 3.10 4 1-71 [» ]
3TVE X-ray 3.10 4 1-66 [» ]
3TVH X-ray 3.10 4 1-63 [» ]
3UXQ X-ray 3.20 4 1-71 [» ]
3UXR X-ray 3.20 4 1-71 [» ]
3UYE X-ray 3.00 4 1-71 [» ]
3UYG X-ray 3.00 4 1-71 [» ]
3UZ1 X-ray 3.30 4 1-71 [» ]
3UZ2 X-ray 3.30 4 1-71 [» ]
3UZ8 X-ray 3.00 4 1-71 [» ]
3UZ9 X-ray 3.00 4 1-71 [» ]
3UZF X-ray 3.30 4 1-71 [» ]
3UZH X-ray 3.30 4 1-71 [» ]
3UZK X-ray 3.30 4 1-71 [» ]
3UZN X-ray 3.30 4 1-71 [» ]
3V23 X-ray 3.00 4 1-71 [» ]
3V25 X-ray 3.00 4 1-71 [» ]
3V27 X-ray 3.10 4 1-71 [» ]
3V29 X-ray 3.10 4 1-71 [» ]
3V2D X-ray 2.70 4 1-71 [» ]
3V2F X-ray 2.70 4 1-71 [» ]
3V6W X-ray 3.90 4 1-71 [» ]
3V6X X-ray 3.90 4 1-71 [» ]
3ZN9 X-ray 3.10 4 1-71 [» ]
3ZNE X-ray 3.10 4 1-71 [» ]
3ZVP X-ray 3.80 4 1-71 [» ]
4ABS X-ray 3.10 4 1-71 [» ]
4B8G X-ray 3.70 4 1-71 [» ]
4B8I X-ray 3.70 4 1-71 [» ]
4BTD X-ray 2.95 4 1-71 [» ]
4BYC X-ray 3.35 4 1-71 [» ]
4BYE X-ray 3.35 4 1-71 [» ]
4DHA X-ray 3.20 4 1-71 [» ]
4DHC X-ray 3.20 4 1-71 [» ]
4EJB X-ray 3.52 4 1-71 [» ]
4EJC X-ray 3.52 4 1-71 [» ]
4G5L X-ray 3.30 4 1-71 [» ]
4G5N X-ray 3.30 4 1-71 [» ]
4G5U X-ray 3.10 4 1-71 [» ]
4G5W X-ray 3.10 4 1-71 [» ]
4JUX X-ray 2.86 4 1-71 [» ]
4K0M X-ray 3.30 4 10-39 [» ]
4K0Q X-ray 3.30 4 10-39 [» ]
4KX0 X-ray 3.44 4 1-71 [» ]
4KX2 X-ray 3.44 4 1-71 [» ]
4NVV X-ray 3.00 4 1-71 [» ]
4NVX X-ray 3.00 4 1-71 [» ]
4NVZ X-ray 3.10 4 1-71 [» ]
4NW1 X-ray 3.10 4 1-71 [» ]
4QCN X-ray 2.60 4 1-71 [» ]
4QCP X-ray 2.60 4 1-71 [» ]
4QCR X-ray 2.55 4 1-71 [» ]
4QCT X-ray 2.55 4 1-71 [» ]
4QCV X-ray 2.90 4 1-71 [» ]
4QCX X-ray 2.90 4 1-71 [» ]
4QCZ X-ray 2.80 4 1-71 [» ]
4QD1 X-ray 2.80 4 1-71 [» ]
ProteinModelPortali Q5SJE1.
SMRi Q5SJE1. Positions 1-71.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1073.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD70896 ; BAD70896 ; BAD70896 .
GeneIDi 3168247.
KEGGi ttj:TTHA1073.
PATRICi 23957106. VBITheThe93045_1053.

Phylogenomic databases

eggNOGi COG0254.
HOGENOMi HOG000284895.
KOi K02909.
OMAi TANCSCG.
OrthoDBi EOG6DVJZM.
PhylomeDBi Q5SJE1.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1105-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5SJE1.

Family and domain databases

HAMAPi MF_00501. Ribosomal_L31_1.
InterProi IPR002150. Ribosomal_L31.
IPR027491. Ribosomal_L31_A.
[Graphical view ]
Pfami PF01197. Ribosomal_L31. 1 hit.
[Graphical view ]
PRINTSi PR01249. RIBOSOMALL31.
TIGRFAMsi TIGR00105. L31. 1 hit.
PROSITEi PS01143. RIBOSOMAL_L31. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.

Entry informationi

Entry nameiRL31_THET8
AccessioniPrimary (citable) accession number: Q5SJE1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: December 21, 2004
Last modified: October 29, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3