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Q5SJE1 (RL31_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L31
Gene names
Name:rpmE
Ordered Locus Names:TTHA1073
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length71 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Binds the 23S rRNA By similarity. HAMAP-Rule MF_00501

Cofactor

Binds 1 zinc ion per subunit By similarity. HAMAP-Rule MF_00501

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_00501

Sequence similarities

Belongs to the ribosomal protein L31P family. Type A subfamily.

Mass spectrometry

Molecular mass is 8287 Da from positions 1 - 71. Determined by MALDI. Ref.2

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 717150S ribosomal protein L31 HAMAP-Rule MF_00501
PRO_0000173171

Sites

Metal binding161Zinc By similarity
Metal binding181Zinc By similarity
Metal binding361Zinc By similarity
Metal binding391Zinc By similarity

Secondary structure

................. 71
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5SJE1 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: 1172052DBDBA687A

FASTA718,286
        10         20         30         40         50         60 
MKEGIHPKLV PARIICGCGN VIETYSTKPE IYVEVCSKCH PFYTGQQRFV DTEGRVERFQ 

        70 
RRYGDSYRKG R 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008226 Genomic DNA. Translation: BAD70896.1.
RefSeqYP_144339.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1YL3X-ray5.5041-71[»]
2HGJX-ray5.0031-71[»]
2HGQX-ray5.5031-71[»]
2HGUX-ray4.5131-71[»]
2J01X-ray2.8041-71[»]
2J03X-ray2.8041-71[»]
2V47X-ray3.8041-71[»]
2V49X-ray3.8041-71[»]
2WDIX-ray3.3041-71[»]
2WDJX-ray3.3041-71[»]
2WDLX-ray3.5041-71[»]
2WDNX-ray3.5041-71[»]
2WH2X-ray3.4541-71[»]
2WH4X-ray3.45410-39[»]
2WRJX-ray3.6041-71[»]
2WRLX-ray3.6041-71[»]
2WROX-ray3.6041-71[»]
2WRRX-ray3.6041-71[»]
2X9SX-ray3.1041-71[»]
2X9UX-ray3.1041-71[»]
2XG0X-ray3.2041-71[»]
2XG2X-ray3.2041-71[»]
2XQEX-ray3.1041-71[»]
2XTGelectron microscopy7.8041-71[»]
2XUXelectron microscopy7.6041-71[»]
2Y0VX-ray3.1041-71[»]
2Y0XX-ray3.1041-71[»]
2Y0ZX-ray3.1041-71[»]
2Y11X-ray3.1041-71[»]
2Y13X-ray3.1041-71[»]
2Y15X-ray3.1041-71[»]
2Y17X-ray3.1041-71[»]
2Y19X-ray3.1041-71[»]
3FINelectron microscopy6.4041-50[»]
3HUXX-ray3.1041-71[»]
3HUZX-ray3.1041-71[»]
3I8FX-ray3.1041-71[»]
3I8IX-ray3.1041-71[»]
3I9CX-ray3.5041-71[»]
3I9EX-ray3.5041-71[»]
3KIRX-ray3.3041-71[»]
3KITX-ray3.3041-71[»]
3KIWX-ray3.6041-71[»]
3KIYX-ray3.6041-71[»]
3KNIX-ray3.0041-71[»]
3KNKX-ray3.0041-71[»]
3KNMX-ray3.4541-71[»]
3KNOX-ray3.4541-71[»]
3OH5X-ray3.0041-71[»]
3OH7X-ray3.0041-71[»]
3OHJX-ray3.0041-71[»]
3OHKX-ray3.0041-71[»]
3OHZX-ray3.0041-71[»]
3OI1X-ray3.0041-71[»]
3OI3X-ray3.1041-71[»]
3OI5X-ray3.1041-71[»]
3TVEX-ray3.1041-66[»]
3TVHX-ray3.1041-63[»]
3UXQX-ray3.2041-71[»]
3UXRX-ray3.2041-71[»]
3UYEX-ray3.0041-71[»]
3UYGX-ray3.0041-71[»]
3UZ1X-ray3.3041-71[»]
3UZ2X-ray3.3041-71[»]
3UZ8X-ray3.0041-71[»]
3UZ9X-ray3.0041-71[»]
3UZFX-ray3.3041-71[»]
3UZHX-ray3.3041-71[»]
3UZKX-ray3.3041-71[»]
3UZNX-ray3.3041-71[»]
3V23X-ray3.0041-71[»]
3V25X-ray3.0041-71[»]
3V27X-ray3.1041-71[»]
3V29X-ray3.1041-71[»]
3V2DX-ray2.7041-71[»]
3V2FX-ray2.7041-71[»]
3V6WX-ray3.9041-71[»]
3V6XX-ray3.9041-71[»]
3ZN9X-ray3.1041-71[»]
3ZNEX-ray3.1041-71[»]
3ZVPX-ray3.8041-71[»]
4ABSX-ray3.1041-71[»]
4B8GX-ray3.7041-71[»]
4B8IX-ray3.7041-71[»]
4BTDX-ray2.9541-71[»]
4BYCX-ray3.3541-71[»]
4BYEX-ray3.3541-71[»]
4DHAX-ray3.2041-71[»]
4DHCX-ray3.2041-71[»]
4EJBX-ray3.5241-71[»]
4EJCX-ray3.5241-71[»]
4G5LX-ray3.3041-71[»]
4G5NX-ray3.3041-71[»]
4G5UX-ray3.1041-71[»]
4G5WX-ray3.1041-71[»]
4JUXX-ray2.8641-71[»]
4K0MX-ray3.30410-39[»]
4K0QX-ray3.30410-39[»]
ProteinModelPortalQ5SJE1.
SMRQ5SJE1. Positions 1-71.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA1073.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD70896; BAD70896; BAD70896.
GeneID3168247.
KEGGttj:TTHA1073.
PATRIC23957106. VBITheThe93045_1053.

Phylogenomic databases

eggNOGCOG0254.
HOGENOMHOG000284895.
KOK02909.
OMACACGETF.
OrthoDBEOG6DVJZM.
ProtClustDBPRK00019.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-1105-MONOMER.

Family and domain databases

HAMAPMF_00501. Ribosomal_L31_1.
InterProIPR002150. Ribosomal_L31.
IPR027491. Ribosomal_L31_A.
[Graphical view]
PfamPF01197. Ribosomal_L31. 1 hit.
[Graphical view]
PRINTSPR01249. RIBOSOMALL31.
TIGRFAMsTIGR00105. L31. 1 hit.
PROSITEPS01143. RIBOSOMAL_L31. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ5SJE1.

Entry information

Entry nameRL31_THET8
AccessionPrimary (citable) accession number: Q5SJE1
Entry history
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: December 21, 2004
Last modified: February 19, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references