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Q5SJE1

- RL31_THET8

UniProt

Q5SJE1 - RL31_THET8

Protein

50S ribosomal protein L31

Gene

rpmE

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Binds the 23S rRNA.UniRule annotation

    Cofactori

    Binds 1 zinc ion per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi16 – 161ZincUniRule annotation
    Metal bindingi18 – 181ZincUniRule annotation
    Metal bindingi36 – 361ZincUniRule annotation
    Metal bindingi39 – 391ZincUniRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. rRNA binding Source: UniProtKB-KW
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    Metal-binding, RNA-binding, rRNA-binding, Zinc

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-1105-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L31UniRule annotation
    Gene namesi
    Name:rpmEUniRule annotation
    Ordered Locus Names:TTHA1073
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 717150S ribosomal protein L31PRO_0000173171Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi300852.TTHA1073.

    Structurei

    Secondary structure

    1
    71
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi3 – 64
    Beta strandi10 – 167
    Beta strandi17 – 193
    Beta strandi21 – 3414
    Turni37 – 393
    Beta strandi40 – 445
    Turni47 – 526
    Beta strandi56 – 594
    Turni61 – 644
    Beta strandi65 – 673
    Helixi68 – 703

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1YL3X-ray5.50448-70[»]
    2HGJX-ray5.0031-71[»]
    2HGQX-ray5.5031-71[»]
    2HGUX-ray4.5131-71[»]
    2J01X-ray2.8041-71[»]
    2J03X-ray2.8041-71[»]
    2V47X-ray3.8041-71[»]
    2V49X-ray3.8041-71[»]
    2WDIX-ray3.3041-71[»]
    2WDJX-ray3.3041-71[»]
    2WDLX-ray3.5041-71[»]
    2WDNX-ray3.5041-71[»]
    2WH2X-ray3.4541-71[»]
    2WH4X-ray3.45410-39[»]
    2WRJX-ray3.6041-71[»]
    2WRLX-ray3.6041-71[»]
    2WROX-ray3.6041-71[»]
    2WRRX-ray3.6041-71[»]
    2X9SX-ray3.1041-71[»]
    2X9UX-ray3.1041-71[»]
    2XG0X-ray3.2041-71[»]
    2XG2X-ray3.2041-71[»]
    2XQEX-ray3.1041-71[»]
    2XTGelectron microscopy7.8041-71[»]
    2XUXelectron microscopy7.6041-71[»]
    2Y0VX-ray3.1041-71[»]
    2Y0XX-ray3.1041-71[»]
    2Y0ZX-ray3.1041-71[»]
    2Y11X-ray3.1041-71[»]
    2Y13X-ray3.1041-71[»]
    2Y15X-ray3.1041-71[»]
    2Y17X-ray3.1041-71[»]
    2Y19X-ray3.1041-71[»]
    3FINelectron microscopy6.4041-50[»]
    3HUXX-ray3.1041-71[»]
    3HUZX-ray3.1041-71[»]
    3I8FX-ray3.1041-71[»]
    3I8IX-ray3.1041-71[»]
    3I9CX-ray3.5041-71[»]
    3I9EX-ray3.5041-71[»]
    3KIRX-ray3.3041-71[»]
    3KITX-ray3.3041-71[»]
    3KIWX-ray3.6041-71[»]
    3KIYX-ray3.6041-71[»]
    3KNIX-ray3.0041-71[»]
    3KNKX-ray3.0041-71[»]
    3KNMX-ray3.4541-71[»]
    3KNOX-ray3.4541-71[»]
    3OH5X-ray3.0041-71[»]
    3OH7X-ray3.0041-71[»]
    3OHJX-ray3.0041-71[»]
    3OHKX-ray3.0041-71[»]
    3OHZX-ray3.0041-71[»]
    3OI1X-ray3.0041-71[»]
    3OI3X-ray3.1041-71[»]
    3OI5X-ray3.1041-71[»]
    3TVEX-ray3.1041-66[»]
    3TVHX-ray3.1041-63[»]
    3UXQX-ray3.2041-71[»]
    3UXRX-ray3.2041-71[»]
    3UYEX-ray3.0041-71[»]
    3UYGX-ray3.0041-71[»]
    3UZ1X-ray3.3041-71[»]
    3UZ2X-ray3.3041-71[»]
    3UZ8X-ray3.0041-71[»]
    3UZ9X-ray3.0041-71[»]
    3UZFX-ray3.3041-71[»]
    3UZHX-ray3.3041-71[»]
    3UZKX-ray3.3041-71[»]
    3UZNX-ray3.3041-71[»]
    3V23X-ray3.0041-71[»]
    3V25X-ray3.0041-71[»]
    3V27X-ray3.1041-71[»]
    3V29X-ray3.1041-71[»]
    3V2DX-ray2.7041-71[»]
    3V2FX-ray2.7041-71[»]
    3V6WX-ray3.9041-71[»]
    3V6XX-ray3.9041-71[»]
    3ZN9X-ray3.1041-71[»]
    3ZNEX-ray3.1041-71[»]
    3ZVPX-ray3.8041-71[»]
    4ABSX-ray3.1041-71[»]
    4B8GX-ray3.7041-71[»]
    4B8IX-ray3.7041-71[»]
    4BTDX-ray2.9541-71[»]
    4BYCX-ray3.3541-71[»]
    4BYEX-ray3.3541-71[»]
    4DHAX-ray3.2041-71[»]
    4DHCX-ray3.2041-71[»]
    4EJBX-ray3.5241-71[»]
    4EJCX-ray3.5241-71[»]
    4G5LX-ray3.3041-71[»]
    4G5NX-ray3.3041-71[»]
    4G5UX-ray3.1041-71[»]
    4G5WX-ray3.1041-71[»]
    4JUXX-ray2.8641-71[»]
    4K0MX-ray3.30410-39[»]
    4K0QX-ray3.30410-39[»]
    4NVVX-ray3.0041-71[»]
    4NVXX-ray3.0041-71[»]
    4NVZX-ray3.1041-71[»]
    4NW1X-ray3.1041-71[»]
    ProteinModelPortaliQ5SJE1.
    SMRiQ5SJE1. Positions 1-71.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ5SJE1.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L31P family. Type A subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0254.
    HOGENOMiHOG000284895.
    KOiK02909.
    OMAiTANCSCG.
    OrthoDBiEOG6DVJZM.
    PhylomeDBiQ5SJE1.

    Family and domain databases

    HAMAPiMF_00501. Ribosomal_L31_1.
    InterProiIPR002150. Ribosomal_L31.
    IPR027491. Ribosomal_L31_A.
    [Graphical view]
    PfamiPF01197. Ribosomal_L31. 1 hit.
    [Graphical view]
    PRINTSiPR01249. RIBOSOMALL31.
    TIGRFAMsiTIGR00105. L31. 1 hit.
    PROSITEiPS01143. RIBOSOMAL_L31. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5SJE1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKEGIHPKLV PARIICGCGN VIETYSTKPE IYVEVCSKCH PFYTGQQRFV   50
    DTEGRVERFQ RRYGDSYRKG R 71
    Length:71
    Mass (Da):8,286
    Last modified:December 21, 2004 - v1
    Checksum:i1172052DBDBA687A
    GO

    Mass spectrometryi

    Molecular mass is 8287 Da from positions 1 - 71. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD70896.1.
    RefSeqiYP_144339.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD70896; BAD70896; BAD70896.
    GeneIDi3168247.
    KEGGittj:TTHA1073.
    PATRICi23957106. VBITheThe93045_1053.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD70896.1 .
    RefSeqi YP_144339.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1YL3 X-ray 5.50 4 48-70 [» ]
    2HGJ X-ray 5.00 3 1-71 [» ]
    2HGQ X-ray 5.50 3 1-71 [» ]
    2HGU X-ray 4.51 3 1-71 [» ]
    2J01 X-ray 2.80 4 1-71 [» ]
    2J03 X-ray 2.80 4 1-71 [» ]
    2V47 X-ray 3.80 4 1-71 [» ]
    2V49 X-ray 3.80 4 1-71 [» ]
    2WDI X-ray 3.30 4 1-71 [» ]
    2WDJ X-ray 3.30 4 1-71 [» ]
    2WDL X-ray 3.50 4 1-71 [» ]
    2WDN X-ray 3.50 4 1-71 [» ]
    2WH2 X-ray 3.45 4 1-71 [» ]
    2WH4 X-ray 3.45 4 10-39 [» ]
    2WRJ X-ray 3.60 4 1-71 [» ]
    2WRL X-ray 3.60 4 1-71 [» ]
    2WRO X-ray 3.60 4 1-71 [» ]
    2WRR X-ray 3.60 4 1-71 [» ]
    2X9S X-ray 3.10 4 1-71 [» ]
    2X9U X-ray 3.10 4 1-71 [» ]
    2XG0 X-ray 3.20 4 1-71 [» ]
    2XG2 X-ray 3.20 4 1-71 [» ]
    2XQE X-ray 3.10 4 1-71 [» ]
    2XTG electron microscopy 7.80 4 1-71 [» ]
    2XUX electron microscopy 7.60 4 1-71 [» ]
    2Y0V X-ray 3.10 4 1-71 [» ]
    2Y0X X-ray 3.10 4 1-71 [» ]
    2Y0Z X-ray 3.10 4 1-71 [» ]
    2Y11 X-ray 3.10 4 1-71 [» ]
    2Y13 X-ray 3.10 4 1-71 [» ]
    2Y15 X-ray 3.10 4 1-71 [» ]
    2Y17 X-ray 3.10 4 1-71 [» ]
    2Y19 X-ray 3.10 4 1-71 [» ]
    3FIN electron microscopy 6.40 4 1-50 [» ]
    3HUX X-ray 3.10 4 1-71 [» ]
    3HUZ X-ray 3.10 4 1-71 [» ]
    3I8F X-ray 3.10 4 1-71 [» ]
    3I8I X-ray 3.10 4 1-71 [» ]
    3I9C X-ray 3.50 4 1-71 [» ]
    3I9E X-ray 3.50 4 1-71 [» ]
    3KIR X-ray 3.30 4 1-71 [» ]
    3KIT X-ray 3.30 4 1-71 [» ]
    3KIW X-ray 3.60 4 1-71 [» ]
    3KIY X-ray 3.60 4 1-71 [» ]
    3KNI X-ray 3.00 4 1-71 [» ]
    3KNK X-ray 3.00 4 1-71 [» ]
    3KNM X-ray 3.45 4 1-71 [» ]
    3KNO X-ray 3.45 4 1-71 [» ]
    3OH5 X-ray 3.00 4 1-71 [» ]
    3OH7 X-ray 3.00 4 1-71 [» ]
    3OHJ X-ray 3.00 4 1-71 [» ]
    3OHK X-ray 3.00 4 1-71 [» ]
    3OHZ X-ray 3.00 4 1-71 [» ]
    3OI1 X-ray 3.00 4 1-71 [» ]
    3OI3 X-ray 3.10 4 1-71 [» ]
    3OI5 X-ray 3.10 4 1-71 [» ]
    3TVE X-ray 3.10 4 1-66 [» ]
    3TVH X-ray 3.10 4 1-63 [» ]
    3UXQ X-ray 3.20 4 1-71 [» ]
    3UXR X-ray 3.20 4 1-71 [» ]
    3UYE X-ray 3.00 4 1-71 [» ]
    3UYG X-ray 3.00 4 1-71 [» ]
    3UZ1 X-ray 3.30 4 1-71 [» ]
    3UZ2 X-ray 3.30 4 1-71 [» ]
    3UZ8 X-ray 3.00 4 1-71 [» ]
    3UZ9 X-ray 3.00 4 1-71 [» ]
    3UZF X-ray 3.30 4 1-71 [» ]
    3UZH X-ray 3.30 4 1-71 [» ]
    3UZK X-ray 3.30 4 1-71 [» ]
    3UZN X-ray 3.30 4 1-71 [» ]
    3V23 X-ray 3.00 4 1-71 [» ]
    3V25 X-ray 3.00 4 1-71 [» ]
    3V27 X-ray 3.10 4 1-71 [» ]
    3V29 X-ray 3.10 4 1-71 [» ]
    3V2D X-ray 2.70 4 1-71 [» ]
    3V2F X-ray 2.70 4 1-71 [» ]
    3V6W X-ray 3.90 4 1-71 [» ]
    3V6X X-ray 3.90 4 1-71 [» ]
    3ZN9 X-ray 3.10 4 1-71 [» ]
    3ZNE X-ray 3.10 4 1-71 [» ]
    3ZVP X-ray 3.80 4 1-71 [» ]
    4ABS X-ray 3.10 4 1-71 [» ]
    4B8G X-ray 3.70 4 1-71 [» ]
    4B8I X-ray 3.70 4 1-71 [» ]
    4BTD X-ray 2.95 4 1-71 [» ]
    4BYC X-ray 3.35 4 1-71 [» ]
    4BYE X-ray 3.35 4 1-71 [» ]
    4DHA X-ray 3.20 4 1-71 [» ]
    4DHC X-ray 3.20 4 1-71 [» ]
    4EJB X-ray 3.52 4 1-71 [» ]
    4EJC X-ray 3.52 4 1-71 [» ]
    4G5L X-ray 3.30 4 1-71 [» ]
    4G5N X-ray 3.30 4 1-71 [» ]
    4G5U X-ray 3.10 4 1-71 [» ]
    4G5W X-ray 3.10 4 1-71 [» ]
    4JUX X-ray 2.86 4 1-71 [» ]
    4K0M X-ray 3.30 4 10-39 [» ]
    4K0Q X-ray 3.30 4 10-39 [» ]
    4NVV X-ray 3.00 4 1-71 [» ]
    4NVX X-ray 3.00 4 1-71 [» ]
    4NVZ X-ray 3.10 4 1-71 [» ]
    4NW1 X-ray 3.10 4 1-71 [» ]
    ProteinModelPortali Q5SJE1.
    SMRi Q5SJE1. Positions 1-71.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA1073.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD70896 ; BAD70896 ; BAD70896 .
    GeneIDi 3168247.
    KEGGi ttj:TTHA1073.
    PATRICi 23957106. VBITheThe93045_1053.

    Phylogenomic databases

    eggNOGi COG0254.
    HOGENOMi HOG000284895.
    KOi K02909.
    OMAi TANCSCG.
    OrthoDBi EOG6DVJZM.
    PhylomeDBi Q5SJE1.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-1105-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q5SJE1.

    Family and domain databases

    HAMAPi MF_00501. Ribosomal_L31_1.
    InterProi IPR002150. Ribosomal_L31.
    IPR027491. Ribosomal_L31_A.
    [Graphical view ]
    Pfami PF01197. Ribosomal_L31. 1 hit.
    [Graphical view ]
    PRINTSi PR01249. RIBOSOMALL31.
    TIGRFAMsi TIGR00105. L31. 1 hit.
    PROSITEi PS01143. RIBOSOMAL_L31. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    2. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.

    Entry informationi

    Entry nameiRL31_THET8
    AccessioniPrimary (citable) accession number: Q5SJE1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 16, 2005
    Last sequence update: December 21, 2004
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3