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Protein

50S ribosomal protein L31

Gene

rpmE

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds the 23S rRNA.UniRule annotation

Cofactori

Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi16ZincUniRule annotation1
Metal bindingi18ZincUniRule annotation1
Metal bindingi36ZincUniRule annotation1
Metal bindingi39ZincUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L31UniRule annotation
Gene namesi
Name:rpmEUniRule annotation
Ordered Locus Names:TTHA1073
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001731711 – 7150S ribosomal protein L31Add BLAST71

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi300852.TTHA1073.

Structurei

Secondary structure

171
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi11 – 16Combined sources6
Beta strandi21 – 25Combined sources5
Beta strandi27 – 34Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R4/Y41-71[»]
1VY4X-ray2.60B4/D41-71[»]
1VY5X-ray2.55B4/D41-71[»]
1VY6X-ray2.90B4/D41-71[»]
1VY7X-ray2.80B4/D41-71[»]
4L47X-ray3.22R4/Y41-71[»]
4L71X-ray3.90R4/Y41-71[»]
4LELX-ray3.90R4/Y41-71[»]
4LFZX-ray3.92R4/Y41-71[»]
4LNTX-ray2.94R4/Y41-71[»]
4LSKX-ray3.48R4/Y41-71[»]
4LT8X-ray3.14R4/Y41-71[»]
4P6FX-ray3.60R4/Y41-71[»]
4P70X-ray3.68R4/Y41-71[»]
4TUAX-ray3.60R4/Y41-71[»]
4TUBX-ray3.60R4/Y41-71[»]
4TUCX-ray3.60R4/Y41-71[»]
4TUDX-ray3.60R4/Y41-71[»]
4TUEX-ray3.50R4/Y41-71[»]
4V4PX-ray5.50448-70[»]
4V4XX-ray5.00B31-71[»]
4V4YX-ray5.50B31-71[»]
4V4ZX-ray4.51B31-71[»]
4V51X-ray2.80B4/D41-71[»]
4V5AX-ray3.50B4/D41-71[»]
4V5CX-ray3.30B4/D41-71[»]
4V5DX-ray3.50B4/D41-71[»]
4V5EX-ray3.45B4/D41-71[»]
4V5FX-ray3.60B4/D41-71[»]
4V5GX-ray3.60B4/D41-71[»]
4V5JX-ray3.10B4/D41-71[»]
4V5KX-ray3.20B4/D41-71[»]
4V5LX-ray3.10B41-71[»]
4V5Melectron microscopy7.80B41-71[»]
4V5Nelectron microscopy7.60B41-71[»]
4V5PX-ray3.10B4/D41-71[»]
4V5QX-ray3.10B4/D41-71[»]
4V5RX-ray3.10B4/D41-71[»]
4V5SX-ray3.10B4/D41-71[»]
4V68electron microscopy6.40B41-50[»]
4V6AX-ray3.10B4/D41-71[»]
4V6FX-ray3.10A4/D41-71[»]
4V6GX-ray3.50B4/D41-71[»]
4V7JX-ray3.30A4/B41-71[»]
4V7KX-ray3.60A4/B41-71[»]
4V7LX-ray3.00B4/D41-71[»]
4V7MX-ray3.45B4/D41-71[»]
4V7WX-ray3.00B4/D41-71[»]
4V7XX-ray3.00B4/D41-71[»]
4V7YX-ray3.00B4/D41-71[»]
4V7ZX-ray3.10B4/D41-71[»]
4V87X-ray3.10A4/D41-66[»]
4V8AX-ray3.20A4/B41-71[»]
4V8BX-ray3.00B4/D41-71[»]
4V8CX-ray3.30A4/B41-71[»]
4V8DX-ray3.00B4/D41-71[»]
4V8EX-ray3.30A4/C41-71[»]
4V8FX-ray3.30A4/D41-71[»]
4V8GX-ray3.00B4/D41-71[»]
4V8HX-ray3.10B4/D41-71[»]
4V8IX-ray2.70B4/D41-71[»]
4V8JX-ray3.90B4/D41-71[»]
4V8NX-ray3.10B4/D41-71[»]
4V8OX-ray3.80B41-71[»]
4V8QX-ray3.10A41-71[»]
4V8UX-ray3.70B4/D41-71[»]
4V8XX-ray3.35B4/D41-71[»]
4V90X-ray2.95B41-71[»]
4V95X-ray3.20B4/D41-71[»]
4V97X-ray3.52B4/D41-71[»]
4V9AX-ray3.30B4/D41-71[»]
4V9BX-ray3.10B4/D41-71[»]
4V9HX-ray2.86B41-71[»]
4V9IX-ray3.30B4/D410-39[»]
4V9RX-ray3.00B4/D41-71[»]
4V9SX-ray3.10B4/D41-71[»]
4W2EX-ray2.9041-71[»]
4W2FX-ray2.40B4/D41-71[»]
4W2GX-ray2.55B4/D41-71[»]
4W2HX-ray2.70B4/D41-71[»]
4W2IX-ray2.70B4/D41-71[»]
4W4GX-ray3.30R4/Y41-71[»]
4WPOX-ray2.80A4/C41-71[»]
4WQ1X-ray3.10I5/M81-66[»]
4WQFX-ray2.80A4/C41-71[»]
4WQRX-ray3.15I5/M81-71[»]
4WQUX-ray2.80A4/C41-71[»]
4WQYX-ray2.80A4/C41-71[»]
4WR6X-ray3.05I5/M81-71[»]
4WRAX-ray3.05I5/M81-71[»]
4WROX-ray3.05M81-71[»]
4WSDX-ray2.95I5/M81-71[»]
4WSMX-ray3.30I5/M81-71[»]
4WT1X-ray3.05I5/M81-71[»]
4WT8X-ray3.40C5/D510-39[»]
4WU1X-ray3.20I5/M81-71[»]
4WZDX-ray3.10I5/M81-71[»]
4WZOX-ray3.30I5/M81-71[»]
4Y4OX-ray2.3014/241-71[»]
4Y4PX-ray2.5014/241-71[»]
4YPBX-ray3.40R4/Y41-71[»]
4YZVX-ray3.10R4/Y41-71[»]
4Z3SX-ray2.6514/241-71[»]
4Z8CX-ray2.9014/241-71[»]
4ZERX-ray3.1014/241-69[»]
4ZSNX-ray3.60R4/Y41-71[»]
5A9Zelectron microscopy4.70Aa1-71[»]
5AA0electron microscopy5.00Aa1-71[»]
5CZPX-ray3.30R4/Y41-71[»]
5D8BX-ray3.63SC/TC1-71[»]
5DFEX-ray3.10R4/Y41-71[»]
5DOXX-ray3.1014/241-71[»]
5DOYX-ray2.6014/241-71[»]
5E7KX-ray3.20M81-71[»]
5E81X-ray2.95M81-71[»]
5EL4X-ray3.15M81-71[»]
5EL5X-ray3.15M81-71[»]
5EL6X-ray3.10M81-71[»]
5EL7X-ray3.15M81-71[»]
5F8KX-ray2.8014/241-69[»]
5FDUX-ray2.9014/241-69[»]
5FDVX-ray2.8014/241-69[»]
5HAUX-ray3.0012/221-71[»]
5HCPX-ray2.8914/241-71[»]
5HCQX-ray2.8014/241-71[»]
5HCRX-ray2.8014/241-71[»]
5HD1X-ray2.7014/241-71[»]
5IB7X-ray2.99M81-71[»]
5IB8X-ray3.13M81-71[»]
5IBBX-ray2.96I5/M81-71[»]
5IMQelectron microscopy3.80v1-71[»]
5IMRelectron microscopy-v1-71[»]
5J30X-ray3.20R4/Y41-71[»]
5J3CX-ray3.04R4/Y41-71[»]
5J4BX-ray2.6014/241-71[»]
5J4CX-ray2.8014/241-71[»]
5J8BX-ray2.6041-71[»]
ProteinModelPortaliQ5SJE1.
SMRiQ5SJE1.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SJE1.

Family & Domainsi

Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG41082DI. Bacteria.
COG0254. LUCA.
HOGENOMiHOG000284895.
KOiK02909.
OMAiEICSQCH.
PhylomeDBiQ5SJE1.

Family and domain databases

HAMAPiMF_00501. Ribosomal_L31_1. 1 hit.
InterProiView protein in InterPro
IPR034704. L28p-like.
IPR002150. Ribosomal_L31.
IPR027491. Ribosomal_L31_A.
PANTHERiPTHR33280. PTHR33280. 1 hit.
PfamiView protein in Pfam
PF01197. Ribosomal_L31. 1 hit.
PRINTSiPR01249. RIBOSOMALL31.
SUPFAMiSSF143800. SSF143800. 1 hit.
TIGRFAMsiTIGR00105. L31. 1 hit.
PROSITEiView protein in PROSITE
PS01143. RIBOSOMAL_L31. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5SJE1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEGIHPKLV PARIICGCGN VIETYSTKPE IYVEVCSKCH PFYTGQQRFV
60 70
DTEGRVERFQ RRYGDSYRKG R
Length:71
Mass (Da):8,286
Last modified:December 21, 2004 - v1
Checksum:i1172052DBDBA687A
GO

Mass spectrometryi

Molecular mass is 8287 Da from positions 1 - 71. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70896.1.
RefSeqiWP_008632496.1. NC_006461.1.
YP_144339.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70896; BAD70896; BAD70896.
GeneIDi3168247.
KEGGittj:TTHA1073.
PATRICifig|300852.9.peg.1053.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL31_THET8
AccessioniPrimary (citable) accession number: Q5SJE1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: December 21, 2004
Last modified: June 7, 2017
This is version 105 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families