Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L31

Gene

rpmE

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds the 23S rRNA.UniRule annotation

Cofactori

Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi16 – 161ZincUniRule annotation
Metal bindingi18 – 181ZincUniRule annotation
Metal bindingi36 – 361ZincUniRule annotation
Metal bindingi39 – 391ZincUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, RNA-binding, rRNA-binding, Zinc

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1105-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L31UniRule annotation
Gene namesi
Name:rpmEUniRule annotation
Ordered Locus Names:TTHA1073
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 717150S ribosomal protein L31PRO_0000173171Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi300852.TTHA1073.

Structurei

Secondary structure

1
71
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi11 – 166Combined sources
Beta strandi21 – 255Combined sources
Beta strandi27 – 348Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R4/Y41-71[»]
1VY4X-ray2.60B4/D41-71[»]
1VY5X-ray2.55B4/D41-71[»]
1VY6X-ray2.90B4/D41-71[»]
1VY7X-ray2.80B4/D41-71[»]
4L47X-ray3.22R4/Y41-71[»]
4L71X-ray3.90R4/Y41-71[»]
4LELX-ray3.90R4/Y41-71[»]
4LFZX-ray3.92R4/Y41-71[»]
4LNTX-ray2.94R4/Y41-71[»]
4LSKX-ray3.48R4/Y41-71[»]
4LT8X-ray3.14R4/Y41-71[»]
4P6FX-ray3.60R4/Y41-71[»]
4P70X-ray3.68R4/Y41-71[»]
4TUAX-ray3.60R4/Y41-71[»]
4TUBX-ray3.60R4/Y41-71[»]
4TUCX-ray3.60R4/Y41-71[»]
4TUDX-ray3.60R4/Y41-71[»]
4TUEX-ray3.50R4/Y41-71[»]
4V4PX-ray5.50448-70[»]
4V4XX-ray5.00B31-71[»]
4V4YX-ray5.50B31-71[»]
4V4ZX-ray4.51B31-71[»]
4V51X-ray2.80B4/D41-71[»]
4V5AX-ray3.50B4/D41-71[»]
4V5CX-ray3.30B4/D41-71[»]
4V5DX-ray3.50B4/D41-71[»]
4V5EX-ray3.45B4/D41-71[»]
4V5FX-ray3.60B4/D41-71[»]
4V5GX-ray3.60B4/D41-71[»]
4V5JX-ray3.10B4/D41-71[»]
4V5KX-ray3.20B4/D41-71[»]
4V5LX-ray3.10B41-71[»]
4V5Melectron microscopy7.80B41-71[»]
4V5Nelectron microscopy7.60B41-71[»]
4V5PX-ray3.10B4/D41-71[»]
4V5QX-ray3.10B4/D41-71[»]
4V5RX-ray3.10B4/D41-71[»]
4V5SX-ray3.10B4/D41-71[»]
4V68electron microscopy6.40B41-50[»]
4V6AX-ray3.10B4/D41-71[»]
4V6FX-ray3.10A4/D41-71[»]
4V6GX-ray3.50B4/D41-71[»]
4V7JX-ray3.30A4/B41-71[»]
4V7KX-ray3.60A4/B41-71[»]
4V7LX-ray3.00B4/D41-71[»]
4V7MX-ray3.45B4/D41-71[»]
4V7WX-ray3.00B4/D41-71[»]
4V7XX-ray3.00B4/D41-71[»]
4V7YX-ray3.00B4/D41-71[»]
4V7ZX-ray3.10B4/D41-71[»]
4V87X-ray3.10A4/D41-66[»]
4V8AX-ray3.20A4/B41-71[»]
4V8BX-ray3.00B4/D41-71[»]
4V8CX-ray3.30A4/B41-71[»]
4V8DX-ray3.00B4/D41-71[»]
4V8EX-ray3.30A4/C41-71[»]
4V8FX-ray3.30A4/D41-71[»]
4V8GX-ray3.00B4/D41-71[»]
4V8HX-ray3.10B4/D41-71[»]
4V8IX-ray2.70B4/D41-71[»]
4V8JX-ray3.90B4/D41-71[»]
4V8NX-ray3.10B4/D41-71[»]
4V8OX-ray3.80B41-71[»]
4V8QX-ray3.10A41-71[»]
4V8UX-ray3.70B4/D41-71[»]
4V8XX-ray3.35B4/D41-71[»]
4V90X-ray2.95B41-71[»]
4V95X-ray3.20B4/D41-71[»]
4V97X-ray3.52B4/D41-71[»]
4V9AX-ray3.30B4/D41-71[»]
4V9BX-ray3.10B4/D41-71[»]
4V9HX-ray2.86B41-71[»]
4V9IX-ray3.30B4/D410-39[»]
4V9RX-ray3.00B4/D41-71[»]
4V9SX-ray3.10B4/D41-71[»]
4W2EX-ray2.9041-71[»]
4W2FX-ray2.40B4/D41-71[»]
4W2GX-ray2.55B4/D41-71[»]
4W2HX-ray2.70B4/D41-71[»]
4W2IX-ray2.70B4/D41-71[»]
4WPOX-ray2.80A4/C41-71[»]
4WQFX-ray2.80A4/C41-71[»]
4WQUX-ray2.80A4/C41-71[»]
4WQYX-ray2.80A4/C41-71[»]
4WWEX-ray3.40510-39[»]
4WWTX-ray3.40510-39[»]
4Y4OX-ray2.3014/241-71[»]
4Y4PX-ray2.5014/241-71[»]
4Z3QX-ray2.6014/241-71[»]
4Z3RX-ray3.1014/241-71[»]
4Z3SX-ray2.6514/241-71[»]
4Z8CX-ray2.9014/241-71[»]
4ZERX-ray3.1014/241-69[»]
ProteinModelPortaliQ5SJE1.
SMRiQ5SJE1. Positions 1-71.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SJE1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L31P family. Type A subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0254.
HOGENOMiHOG000284895.
KOiK02909.
OMAiDIHPNYV.
OrthoDBiEOG6DVJZM.
PhylomeDBiQ5SJE1.

Family and domain databases

HAMAPiMF_00501. Ribosomal_L31_1.
InterProiIPR002150. Ribosomal_L31.
IPR027491. Ribosomal_L31_A.
[Graphical view]
PfamiPF01197. Ribosomal_L31. 1 hit.
[Graphical view]
PRINTSiPR01249. RIBOSOMALL31.
TIGRFAMsiTIGR00105. L31. 1 hit.
PROSITEiPS01143. RIBOSOMAL_L31. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SJE1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEGIHPKLV PARIICGCGN VIETYSTKPE IYVEVCSKCH PFYTGQQRFV
60 70
DTEGRVERFQ RRYGDSYRKG R
Length:71
Mass (Da):8,286
Last modified:December 21, 2004 - v1
Checksum:i1172052DBDBA687A
GO

Mass spectrometryi

Molecular mass is 8287 Da from positions 1 - 71. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70896.1.
RefSeqiWP_008632496.1. NC_006461.1.
YP_144339.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70896; BAD70896; BAD70896.
GeneIDi3168247.
KEGGittj:TTHA1073.
PATRICi23957106. VBITheThe93045_1053.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70896.1.
RefSeqiWP_008632496.1. NC_006461.1.
YP_144339.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R4/Y41-71[»]
1VY4X-ray2.60B4/D41-71[»]
1VY5X-ray2.55B4/D41-71[»]
1VY6X-ray2.90B4/D41-71[»]
1VY7X-ray2.80B4/D41-71[»]
4L47X-ray3.22R4/Y41-71[»]
4L71X-ray3.90R4/Y41-71[»]
4LELX-ray3.90R4/Y41-71[»]
4LFZX-ray3.92R4/Y41-71[»]
4LNTX-ray2.94R4/Y41-71[»]
4LSKX-ray3.48R4/Y41-71[»]
4LT8X-ray3.14R4/Y41-71[»]
4P6FX-ray3.60R4/Y41-71[»]
4P70X-ray3.68R4/Y41-71[»]
4TUAX-ray3.60R4/Y41-71[»]
4TUBX-ray3.60R4/Y41-71[»]
4TUCX-ray3.60R4/Y41-71[»]
4TUDX-ray3.60R4/Y41-71[»]
4TUEX-ray3.50R4/Y41-71[»]
4V4PX-ray5.50448-70[»]
4V4XX-ray5.00B31-71[»]
4V4YX-ray5.50B31-71[»]
4V4ZX-ray4.51B31-71[»]
4V51X-ray2.80B4/D41-71[»]
4V5AX-ray3.50B4/D41-71[»]
4V5CX-ray3.30B4/D41-71[»]
4V5DX-ray3.50B4/D41-71[»]
4V5EX-ray3.45B4/D41-71[»]
4V5FX-ray3.60B4/D41-71[»]
4V5GX-ray3.60B4/D41-71[»]
4V5JX-ray3.10B4/D41-71[»]
4V5KX-ray3.20B4/D41-71[»]
4V5LX-ray3.10B41-71[»]
4V5Melectron microscopy7.80B41-71[»]
4V5Nelectron microscopy7.60B41-71[»]
4V5PX-ray3.10B4/D41-71[»]
4V5QX-ray3.10B4/D41-71[»]
4V5RX-ray3.10B4/D41-71[»]
4V5SX-ray3.10B4/D41-71[»]
4V68electron microscopy6.40B41-50[»]
4V6AX-ray3.10B4/D41-71[»]
4V6FX-ray3.10A4/D41-71[»]
4V6GX-ray3.50B4/D41-71[»]
4V7JX-ray3.30A4/B41-71[»]
4V7KX-ray3.60A4/B41-71[»]
4V7LX-ray3.00B4/D41-71[»]
4V7MX-ray3.45B4/D41-71[»]
4V7WX-ray3.00B4/D41-71[»]
4V7XX-ray3.00B4/D41-71[»]
4V7YX-ray3.00B4/D41-71[»]
4V7ZX-ray3.10B4/D41-71[»]
4V87X-ray3.10A4/D41-66[»]
4V8AX-ray3.20A4/B41-71[»]
4V8BX-ray3.00B4/D41-71[»]
4V8CX-ray3.30A4/B41-71[»]
4V8DX-ray3.00B4/D41-71[»]
4V8EX-ray3.30A4/C41-71[»]
4V8FX-ray3.30A4/D41-71[»]
4V8GX-ray3.00B4/D41-71[»]
4V8HX-ray3.10B4/D41-71[»]
4V8IX-ray2.70B4/D41-71[»]
4V8JX-ray3.90B4/D41-71[»]
4V8NX-ray3.10B4/D41-71[»]
4V8OX-ray3.80B41-71[»]
4V8QX-ray3.10A41-71[»]
4V8UX-ray3.70B4/D41-71[»]
4V8XX-ray3.35B4/D41-71[»]
4V90X-ray2.95B41-71[»]
4V95X-ray3.20B4/D41-71[»]
4V97X-ray3.52B4/D41-71[»]
4V9AX-ray3.30B4/D41-71[»]
4V9BX-ray3.10B4/D41-71[»]
4V9HX-ray2.86B41-71[»]
4V9IX-ray3.30B4/D410-39[»]
4V9RX-ray3.00B4/D41-71[»]
4V9SX-ray3.10B4/D41-71[»]
4W2EX-ray2.9041-71[»]
4W2FX-ray2.40B4/D41-71[»]
4W2GX-ray2.55B4/D41-71[»]
4W2HX-ray2.70B4/D41-71[»]
4W2IX-ray2.70B4/D41-71[»]
4WPOX-ray2.80A4/C41-71[»]
4WQFX-ray2.80A4/C41-71[»]
4WQUX-ray2.80A4/C41-71[»]
4WQYX-ray2.80A4/C41-71[»]
4WWEX-ray3.40510-39[»]
4WWTX-ray3.40510-39[»]
4Y4OX-ray2.3014/241-71[»]
4Y4PX-ray2.5014/241-71[»]
4Z3QX-ray2.6014/241-71[»]
4Z3RX-ray3.1014/241-71[»]
4Z3SX-ray2.6514/241-71[»]
4Z8CX-ray2.9014/241-71[»]
4ZERX-ray3.1014/241-69[»]
ProteinModelPortaliQ5SJE1.
SMRiQ5SJE1. Positions 1-71.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA1073.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD70896; BAD70896; BAD70896.
GeneIDi3168247.
KEGGittj:TTHA1073.
PATRICi23957106. VBITheThe93045_1053.

Phylogenomic databases

eggNOGiCOG0254.
HOGENOMiHOG000284895.
KOiK02909.
OMAiDIHPNYV.
OrthoDBiEOG6DVJZM.
PhylomeDBiQ5SJE1.

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1105-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ5SJE1.

Family and domain databases

HAMAPiMF_00501. Ribosomal_L31_1.
InterProiIPR002150. Ribosomal_L31.
IPR027491. Ribosomal_L31_A.
[Graphical view]
PfamiPF01197. Ribosomal_L31. 1 hit.
[Graphical view]
PRINTSiPR01249. RIBOSOMALL31.
TIGRFAMsiTIGR00105. L31. 1 hit.
PROSITEiPS01143. RIBOSOMAL_L31. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.

Entry informationi

Entry nameiRL31_THET8
AccessioniPrimary (citable) accession number: Q5SJE1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: December 21, 2004
Last modified: July 22, 2015
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.