50S ribosomal protein L31 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Contribute

Send feedback

Read comments (?) or add your own

Q5SJE1 (RL31_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 66. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

text xml rdf/xml gff fasta

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
50S ribosomal protein L31

Gene names

Name:	rpmE
Ordered Locus Names:	TTHA1073

Organism

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]

Taxonomic identifier

300852 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length	71 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Binds the 23S rRNA By similarity.
Cofactor	Binds 1 zinc ion per subunit By similarity.
Subunit structure	Part of the 50S ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L31P family. Type A subfamily.
Mass spectrometry	Molecular mass is 8287 Da from positions 1 - 71. Determined by MALDI. Ref.2

Ontologies

Keywords
Ligand	Metal-binding RNA-binding Zinc rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 71

50S ribosomal protein L31 HAMAP-Rule MF_00501

PRO_0000173171

Sites

Metal binding

Zinc By similarity

Metal binding

Zinc By similarity

Metal binding

Zinc By similarity

Metal binding

Zinc By similarity

Secondary structure

Helix Strand Turn

Details...

Sequences

Sequence

Length

Mass (Da)

Tools

Q5SJE1 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: 1172052DBDBA687A
Show »

FASTA

8,286

        10         20         30         40         50         60 
MKEGIHPKLV PARIICGCGN VIETYSTKPE IYVEVCSKCH PFYTGQQRFV DTEGRVERFQ 

        70 
RRYGDSYRKG R

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Thermus thermophilus HB8." Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S. Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HB8 / ATCC 27634 / DSM 579.
[2]	"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry." Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A. Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract] Cited for: MASS SPECTROMETRY.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AP008226 Genomic DNA. Translation: BAD70896.1.

RefSeq

YP_144339.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1YL3	X-ray	5.50	4	1-71	[»]
2HGJ	X-ray	5.00	3	1-71	[»]
2HGQ	X-ray	5.50	3	1-71	[»]
2HGU	X-ray	4.51	3	1-71	[»]
2J01	X-ray	2.80	4	1-71	[»]
2J03	X-ray	2.80	4	1-71	[»]
2V47	X-ray	3.80	4	1-71	[»]
2V49	X-ray	3.80	4	1-71	[»]
2WDI	X-ray	3.30	4	1-71	[»]
2WDJ	X-ray	3.30	4	1-71	[»]
2WDL	X-ray	3.50	4	1-71	[»]
2WDN	X-ray	3.50	4	1-71	[»]
2WH2	X-ray	3.45	4	1-71	[»]
2WH4	X-ray	3.45	4	10-39	[»]
2WRJ	X-ray	3.60	4	1-71	[»]
2WRL	X-ray	3.60	4	1-71	[»]
2WRO	X-ray	3.60	4	1-71	[»]
2WRR	X-ray	3.60	4	1-71	[»]
2X9S	X-ray	3.10	4	1-71	[»]
2X9U	X-ray	3.10	4	1-71	[»]
2XG0	X-ray	3.20	4	1-71	[»]
2XG2	X-ray	3.20	4	1-71	[»]
2XQE	X-ray	3.10	4	1-71	[»]
2XTG	electron microscopy	7.80	4	1-71	[»]
2XUX	electron microscopy	7.60	4	1-71	[»]
2Y0V	X-ray	3.10	4	1-71	[»]
2Y0X	X-ray	3.10	4	1-71	[»]
2Y0Z	X-ray	3.10	4	1-71	[»]
2Y11	X-ray	3.10	4	1-71	[»]
2Y13	X-ray	3.10	4	1-71	[»]
2Y15	X-ray	3.10	4	1-71	[»]
2Y17	X-ray	3.10	4	1-71	[»]
2Y19	X-ray	3.10	4	1-71	[»]
3FIN	electron microscopy	6.40	4	1-50	[»]
3HUX	X-ray	3.10	4	1-71	[»]
3HUZ	X-ray	3.10	4	1-71	[»]
3I8F	X-ray	3.10	4	1-71	[»]
3I8I	X-ray	3.10	4	1-71	[»]
3I9C	X-ray	3.50	4	1-71	[»]
3I9E	X-ray	3.50	4	1-71	[»]
3KIR	X-ray	3.30	4	1-71	[»]
3KIT	X-ray	3.30	4	1-71	[»]
3KIW	X-ray	3.60	4	1-71	[»]
3KIY	X-ray	3.60	4	1-71	[»]
3KNI	X-ray	3.00	4	1-71	[»]
3KNK	X-ray	3.00	4	1-71	[»]
3KNM	X-ray	3.45	4	1-71	[»]
3KNO	X-ray	3.45	4	1-71	[»]
3OH5	X-ray	3.00	4	1-71	[»]
3OH7	X-ray	3.00	4	1-71	[»]
3OHJ	X-ray	3.00	4	1-71	[»]
3OHK	X-ray	3.00	4	1-71	[»]
3OHZ	X-ray	3.00	4	1-71	[»]
3OI1	X-ray	3.00	4	1-71	[»]
3OI3	X-ray	3.10	4	1-71	[»]
3OI5	X-ray	3.10	4	1-71	[»]
3TVE	X-ray	3.10	4	1-66	[»]
3TVH	X-ray	3.10	4	1-63	[»]
3UXQ	X-ray	3.20	4	1-71	[»]
3UXR	X-ray	3.20	4	1-71	[»]
3UYE	X-ray	3.00	4	1-71	[»]
3UYG	X-ray	3.00	4	1-71	[»]
3UZ1	X-ray	3.30	4	1-71	[»]
3UZ2	X-ray	3.30	4	1-71	[»]
3UZ8	X-ray	3.00	4	1-71	[»]
3UZ9	X-ray	3.00	4	1-71	[»]
3UZF	X-ray	3.30	4	1-71	[»]
3UZH	X-ray	3.30	4	1-71	[»]
3UZK	X-ray	3.30	4	1-71	[»]
3UZN	X-ray	3.30	4	1-71	[»]
3V23	X-ray	3.00	4	1-71	[»]
3V25	X-ray	3.00	4	1-71	[»]
3V27	X-ray	3.10	4	1-71	[»]
3V29	X-ray	3.10	4	1-71	[»]
3V2D	X-ray	2.70	4	1-71	[»]
3V2F	X-ray	2.70	4	1-71	[»]
3ZVP	X-ray	3.80	4	1-71	[»]
4ABS	X-ray	3.10	4	1-71	[»]
4DHA	X-ray	3.20	4	1-71	[»]
4DHC	X-ray	3.20	4	1-71	[»]
4G5L	X-ray	3.30	4	1-71	[»]
4G5N	X-ray	3.30	4	1-71	[»]
4G5U	X-ray	3.10	4	1-71	[»]
4G5W	X-ray	3.10	4	1-71	[»]

ProteinModelPortal

Q5SJE1.

SMR

Q5SJE1. Positions 1-71.

ModBase

Search...

Protein-protein interaction databases

STRING

300852.TTHA1073.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

BAD70896; BAD70896; BAD70896.

GeneID

3168247.

KEGG

ttj:TTHA1073.

PATRIC

23957106. VBITheThe93045_1053.

Phylogenomic databases

eggNOG

COG0254.

HOGENOM

HOG000284895.

K02909.

OMA

EGIHPKY.

ProtClustDB

PRK00019.

Family and domain databases

HAMAP

MF_00501. Ribosomal_L31_1.

InterPro

IPR002150. Ribosomal_L31.
[Graphical view]

Pfam

PF01197. Ribosomal_L31. 1 hit.
[Graphical view]

PRINTS

PR01249. RIBOSOMALL31.

TIGRFAMs

TIGR00105. L31. 1 hit.

PROSITE

PS01143. RIBOSOMAL_L31. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

Q5SJE1.

Entry information

Entry name

RL31_THET8

Accession

Primary (citable) accession number: Q5SJE1

Entry history

Integrated into UniProtKB/Swiss-Prot:	August 16, 2005
Last sequence update:	December 21, 2004
Last modified:	May 1, 2013
This is version 66 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Sites

Secondary structure

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Other

Entry information

Relevant documents