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Protein

30S ribosomal protein S15

Gene

rpsO

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.UniRule annotation
Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.1 Publication

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S15UniRule annotation
Gene namesi
Name:rpsOUniRule annotation
Ordered Locus Names:TTHA1138
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Chemistry databases

DrugBankiDB08185. 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001155742 – 8930S ribosomal protein S15Add BLAST88

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA.

Protein-protein interaction databases

STRINGi300852.TTHA1138.

Structurei

Secondary structure

189
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi5 – 13Combined sources9
Beta strandi17 – 20Combined sources4
Beta strandi22 – 24Combined sources3
Helixi25 – 42Combined sources18
Beta strandi43 – 45Combined sources3
Helixi50 – 73Combined sources24
Helixi75 – 85Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00O1-89[»]
1FKAX-ray3.30O1-89[»]
1G1XX-ray2.60B/G2-89[»]
1HNWX-ray3.40O1-89[»]
1HNXX-ray3.40O1-89[»]
1HNZX-ray3.30O1-89[»]
1HR0X-ray3.20O1-89[»]
1I94X-ray3.20O2-89[»]
1I95X-ray4.50O2-89[»]
1I96X-ray4.20O2-89[»]
1I97X-ray4.50O2-89[»]
1IBKX-ray3.31O1-89[»]
1IBLX-ray3.11O1-89[»]
1IBMX-ray3.31O1-89[»]
1J5EX-ray3.05O2-89[»]
1JGOX-ray5.60R1-89[»]
1JGPX-ray7.00R1-89[»]
1JGQX-ray5.00R1-89[»]
1L1Umodel-O1-89[»]
1ML5electron microscopy14.00R1-89[»]
1N32X-ray3.00O2-89[»]
1N33X-ray3.35O2-89[»]
1N34X-ray3.80O2-89[»]
1N36X-ray3.65O2-89[»]
1QD7X-ray5.50H21-70[»]
1VVJX-ray3.44QO/XO1-89[»]
1VY4X-ray2.60AO/CO1-89[»]
1VY5X-ray2.55AO/CO1-89[»]
1VY6X-ray2.90AO/CO1-89[»]
1VY7X-ray2.80AO/CO1-89[»]
1XMOX-ray3.25O1-89[»]
1XMQX-ray3.00O1-89[»]
1XNQX-ray3.05O1-89[»]
1XNRX-ray3.10O1-89[»]
2E5LX-ray3.30O2-89[»]
2F4VX-ray3.80O1-89[»]
2HHHX-ray3.35O1-89[»]
2UU9X-ray3.10O2-89[»]
2UUAX-ray2.90O2-89[»]
2UUBX-ray2.80O2-89[»]
2UUCX-ray3.10O2-89[»]
2UXBX-ray3.10O2-89[»]
2UXCX-ray2.90O2-89[»]
2UXDX-ray3.20O2-89[»]
2VQEX-ray2.50O1-89[»]
2VQFX-ray2.90O1-89[»]
2ZM6X-ray3.30O2-89[»]
3OTOX-ray3.69O1-89[»]
3T1HX-ray3.11O1-89[»]
3T1YX-ray2.80O1-89[»]
4AQYX-ray3.50O2-89[»]
4B3MX-ray2.90O2-89[»]
4B3RX-ray3.00O2-89[»]
4B3SX-ray3.15O2-89[»]
4B3TX-ray3.00O2-89[»]
4DR1X-ray3.60O1-89[»]
4DR2X-ray3.25O1-89[»]
4DR3X-ray3.35O1-89[»]
4DR4X-ray3.97O1-89[»]
4DR5X-ray3.45O1-89[»]
4DR6X-ray3.30O1-89[»]
4DR7X-ray3.75O1-89[»]
4DUYX-ray3.39O1-89[»]
4DUZX-ray3.65O1-89[»]
4DV0X-ray3.85O1-89[»]
4DV1X-ray3.85O1-89[»]
4DV2X-ray3.65O1-89[»]
4DV3X-ray3.55O1-89[»]
4DV4X-ray3.65O1-89[»]
4DV5X-ray3.68O1-89[»]
4DV6X-ray3.30O1-89[»]
4DV7X-ray3.29O1-89[»]
4GKJX-ray3.30O2-89[»]
4GKKX-ray3.20O2-89[»]
4JI0X-ray3.49O1-89[»]
4JI1X-ray3.14O1-89[»]
4JI2X-ray3.64O1-89[»]
4JI3X-ray3.35O1-89[»]
4JI4X-ray3.69O1-89[»]
4JI5X-ray3.85O1-89[»]
4JI6X-ray3.55O1-89[»]
4JI7X-ray3.50O1-89[»]
4JI8X-ray3.74O1-89[»]
4JV5X-ray3.16O2-89[»]
4JYAX-ray3.10O2-89[»]
4K0KX-ray3.40O2-89[»]
4KHPX-ray3.10O2-89[»]
4L47X-ray3.22QO/XO1-89[»]
4L71X-ray3.90QO/XO1-89[»]
4LELX-ray3.90QO/XO1-89[»]
4LF4X-ray3.34O1-89[»]
4LF5X-ray3.75O1-89[»]
4LF6X-ray3.31O1-89[»]
4LF7X-ray3.15O1-89[»]
4LF8X-ray3.15O1-89[»]
4LF9X-ray3.28O1-89[»]
4LFAX-ray3.65O1-89[»]
4LFBX-ray3.01O1-89[»]
4LFCX-ray3.60O1-89[»]
4LFZX-ray3.92QO/XO1-89[»]
4LNTX-ray2.94QO/XO1-89[»]
4LSKX-ray3.48QO/XO1-89[»]
4LT8X-ray3.14QO/XO1-89[»]
4NXMX-ray3.65O1-89[»]
4NXNX-ray3.54O1-89[»]
4OX9X-ray3.80O2-89[»]
4P6FX-ray3.60QO/XO1-89[»]
4P70X-ray3.68QO/XO1-89[»]
4TUAX-ray3.60QO/XO1-89[»]
4TUBX-ray3.60QO/XO1-89[»]
4TUCX-ray3.60QO/XO1-89[»]
4TUDX-ray3.60QO/XO1-89[»]
4TUEX-ray3.50QO/XO1-89[»]
4V42X-ray5.50AR1-89[»]
4V4AX-ray9.50O2-89[»]
4V4IX-ray3.71p-[»]
4V4PX-ray5.50BR1-89[»]
4V4RX-ray5.90AO1-89[»]
4V4SX-ray6.76AO1-89[»]
4V4TX-ray6.46AO1-89[»]
4V4XX-ray5.00AR1-89[»]
4V4YX-ray5.50AR1-89[»]
4V4ZX-ray4.51AR1-89[»]
4V51X-ray2.80AO/CO2-89[»]
4V5AX-ray3.50AO/CO2-89[»]
4V5CX-ray3.30AO/CO1-89[»]
4V5DX-ray3.50AO/CO1-89[»]
4V5EX-ray3.45AO/CO1-89[»]
4V5FX-ray3.60AO/CO1-89[»]
4V5GX-ray3.60AO/CO1-89[»]
4V5JX-ray3.10AO/CO1-89[»]
4V5KX-ray3.20AO/CO1-89[»]
4V5LX-ray3.10AO1-89[»]
4V5Melectron microscopy7.80AO1-89[»]
4V5Nelectron microscopy7.60AO1-89[»]
4V5PX-ray3.10AO/CO1-89[»]
4V5QX-ray3.10AO/CO1-89[»]
4V5RX-ray3.10AO/CO1-89[»]
4V5SX-ray3.10AO/CO1-89[»]
4V5Zelectron microscopy8.70o1-89[»]
4V68electron microscopy6.40AO2-89[»]
4V6AX-ray3.10AO/CO1-89[»]
4V6FX-ray3.10BR/CR1-89[»]
4V6GX-ray3.50AR/CR1-89[»]
4V7JX-ray3.30Ao/Bo1-89[»]
4V7KX-ray3.60Ao/Bo1-89[»]
4V7LX-ray3.00AO/CO1-89[»]
4V7MX-ray3.45AO/CO1-89[»]
4V7WX-ray3.00AO/CO1-89[»]
4V7XX-ray3.00AO/CO1-89[»]
4V7YX-ray3.00AO/CO1-89[»]
4V7ZX-ray3.10AO/CO1-89[»]
4V87X-ray3.10BR/CR1-89[»]
4V8AX-ray3.20CO/DO1-89[»]
4V8BX-ray3.00AR/CR1-89[»]
4V8CX-ray3.30CR/DR1-89[»]
4V8DX-ray3.00AR/CR1-89[»]
4V8EX-ray3.30BR/DR1-89[»]
4V8FX-ray3.30BR/CR1-89[»]
4V8GX-ray3.00AO/CO1-89[»]
4V8HX-ray3.10AO/CO1-89[»]
4V8IX-ray2.70AO/CO1-89[»]
4V8JX-ray3.90AO/CO1-89[»]
4V8NX-ray3.10AO/CO1-89[»]
4V8OX-ray3.80AO1-89[»]
4V8QX-ray3.10BO1-89[»]
4V8UX-ray3.70AO/CO1-89[»]
4V8XX-ray3.35AO/CO1-89[»]
4V90X-ray2.95AO1-89[»]
4V95X-ray3.20AO/CO1-89[»]
4V97X-ray3.52AO/CO1-89[»]
4V9AX-ray3.30AR/CR1-89[»]
4V9BX-ray3.10AR/CR1-89[»]
4V9HX-ray2.86AO2-89[»]
4V9IX-ray3.30AO/CO2-89[»]
4V9RX-ray3.00AO/CO1-89[»]
4V9SX-ray3.10AO/CO1-89[»]
4W2EX-ray2.90o1-89[»]
4W2FX-ray2.40AO/CO1-89[»]
4W2GX-ray2.55AO/CO1-89[»]
4W2HX-ray2.70AO/CO1-89[»]
4W2IX-ray2.70AO/CO1-89[»]
4W4GX-ray3.30QO/XO1-89[»]
4WPOX-ray2.80BO/DO1-89[»]
4WQ1X-ray3.106A/6I1-89[»]
4WQFX-ray2.80BO/DO1-89[»]
4WQRX-ray3.156A/6I1-89[»]
4WQUX-ray2.80BO/DO1-89[»]
4WQYX-ray2.80BO/DO1-89[»]
4WR6X-ray3.056A/6I1-89[»]
4WRAX-ray3.056A/6I1-89[»]
4WROX-ray3.056I1-89[»]
4WSDX-ray2.956A/6I1-89[»]
4WSMX-ray3.306A/6I1-89[»]
4WT1X-ray3.056A/6I1-89[»]
4WT8X-ray3.40AO/BO2-89[»]
4WU1X-ray3.206A/6I1-89[»]
4WZDX-ray3.106A/6I1-89[»]
4WZOX-ray3.306A/6I1-89[»]
4X62X-ray3.45O2-89[»]
4X64X-ray3.35O2-89[»]
4X65X-ray3.35O2-89[»]
4X66X-ray3.45O2-89[»]
4Y4OX-ray2.301o/2o1-89[»]
4Y4PX-ray2.501o/2o1-89[»]
4YHHX-ray3.42O2-89[»]
4YPBX-ray3.40QO/XO1-89[»]
4YY3X-ray3.60O1-89[»]
4YZVX-ray3.10QO/XO1-89[»]
4Z3SX-ray2.651o/2o1-89[»]
4Z8CX-ray2.901o/2o1-89[»]
4ZERX-ray3.101o/2o2-89[»]
4ZSNX-ray3.60QO/XO1-89[»]
5A9Zelectron microscopy4.70BS2-89[»]
5AA0electron microscopy5.00BS2-89[»]
5BR8X-ray3.40O1-89[»]
5CZPX-ray3.30QO/XO1-89[»]
5D8BX-ray3.63LC/PA1-89[»]
5DFEX-ray3.10QO/XO1-89[»]
5DOXX-ray3.101o/2o1-89[»]
5DOYX-ray2.601o/2o1-89[»]
5E7KX-ray3.206A/6I1-89[»]
5E81X-ray2.956A/6I1-89[»]
5EL4X-ray3.156A/6I1-89[»]
5EL5X-ray3.156A/6I1-89[»]
5EL6X-ray3.106A/6I1-89[»]
5EL7X-ray3.156A/6I1-89[»]
5F8KX-ray2.801o/2o2-89[»]
5FDUX-ray2.901o/2o2-89[»]
5FDVX-ray2.801o/2o2-89[»]
5HAUX-ray3.001o/2o1-89[»]
5HCPX-ray2.891o/2o1-89[»]
5HCQX-ray2.801o/2o1-89[»]
5HCRX-ray2.801o/2o1-89[»]
5HD1X-ray2.701o/2o1-89[»]
5IB7X-ray2.996A/6I1-89[»]
5IB8X-ray3.136A/6I1-89[»]
5IBBX-ray2.966A/6I1-89[»]
5IMQelectron microscopy3.80S1-89[»]
5IMRelectron microscopy-S1-89[»]
5IWAX-ray3.50O2-89[»]
5J30X-ray3.20QO/XO1-89[»]
5J3CX-ray3.04QO/XO1-89[»]
5J4BX-ray2.601o/2o1-89[»]
5J4CX-ray2.801o/2o1-89[»]
5J8BX-ray2.60o1-89[»]
5LMNelectron microscopy3.55O1-89[»]
5LMOelectron microscopy4.30O1-89[»]
5LMPelectron microscopy5.35O1-89[»]
5LMQelectron microscopy4.20O1-89[»]
5LMRelectron microscopy4.45O1-89[»]
5LMSelectron microscopy5.10O1-89[»]
5LMTelectron microscopy4.15O1-89[»]
5LMUelectron microscopy4.00O1-89[»]
5LMVelectron microscopy4.90O1-89[»]
ProteinModelPortaliQ5SJ76.
SMRiQ5SJ76.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SJ76.

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uS15 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K77. Bacteria.
COG0184. LUCA.
HOGENOMiHOG000040097.
KOiK02956.
OMAiFKTHVKD.
PhylomeDBiQ5SJ76.

Family and domain databases

CDDicd00353. Ribosomal_S15p_S13e. 1 hit.
HAMAPiMF_01343_B. Ribosomal_S15_B. 1 hit.
InterProiView protein in InterPro
IPR000589. Ribosomal_S15.
IPR005290. Ribosomal_S15_bac-type.
IPR009068. S15_NS1_RNA-bd.
PANTHERiPTHR23321. PTHR23321. 1 hit.
PfamiView protein in Pfam
PF00312. Ribosomal_S15. 1 hit.
SMARTiView protein in SMART
SM01387. Ribosomal_S15. 1 hit.
SUPFAMiSSF47060. SSF47060. 1 hit.
TIGRFAMsiTIGR00952. S15_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00362. RIBOSOMAL_S15. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SJ76-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPITKEEKQK VIQEFARFPG DTGSTEVQVA LLTLRINRLS EHLKVHKKDH
60 70 80
HSHRGLLMMV GQRRRLLRYL QREDPERYRA LIEKLGIRG
Length:89
Mass (Da):10,554
Last modified:January 23, 2007 - v3
Checksum:i9DB7E1C533DBF340
GO

Mass spectrometryi

Molecular mass is 10424 Da from positions 2 - 89. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L09121 Genomic DNA. Translation: AAD38865.1.
AP008226 Genomic DNA. Translation: BAD70961.1.
PIRiT52484.
RefSeqiWP_008632621.1. NC_006461.1.
YP_144404.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70961; BAD70961; BAD70961.
GeneIDi3169463.
KEGGittj:TTHA1138.
PATRICifig|300852.9.peg.1117.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS15_THET8
AccessioniPrimary (citable) accession number: Q5SJ76
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 124 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families