(Neo)pullulanase - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Preferred order of sections

Names and origin

Protein names

Submitted name:
(Neo)pullulanase EMBL BAD71386.1

Gene names

Ordered Locus Names:

TTHA1563

Organism

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Taxonomic identifier

300852 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus

Protein attributes

Sequence length	475 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 2Z1K Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	catalytic activity Inferred from electronic annotation. Source: InterPro cation binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Region

79 – 82

4

Glucose binding PDB 2Z1K

Region

164 – 165

2

Glucose binding PDB 2Z1K

Region

200 – 206

7

Glucose binding PDB 2Z1K

Region

232 – 234

3

Glucose binding PDB 2Z1K

Region

314 – 315

2

Glucose binding PDB 2Z1K

Sites

Binding site

121

1

Glucose PDB 2Z1K

Binding site

169

1

Glucose PDB 2Z1K

Binding site

276

1

Glucose; via amide nitrogen PDB 2Z1K

Binding site

359

1

Glucose PDB 2Z1K

Binding site

363

1

Glucose PDB 2Z1K

Sequences

Sequence

Length

Mass (Da)

Tools

Q5SI17 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: 337691084D3C8332
Show »

FASTA

475

53,758

        10         20         30         40         50         60 
MAWYEGAFFY QIFPDRFFRA GPPGRPAPAG PFEPWEAPPT LRGFKGGTLW GVAEKLPYLL 

        70         80         90        100        110        120 
DLGVEAIYLN PVFASTANHR YHTVDYFQVD PILGGNEALR HLLEVAHAHG VRVILDGVFN 

       130        140        150        160        170        180 
HTGRGFFAFQ HLMENGEQSP YRDWYHVKGF PLKAYTAHPN YEAWWGNPEL PKLKVETPAV 

       190        200        210        220        230        240 
REYLLAVAEH WIRFGVDGWR LDVPNEIPDP TFWREFRQRV KGANPEAYIV GEIWEEADFW 

       250        260        270        280        290        300 
LQGDMFDAVM NYPLARAVLG FVGGEALDRD LAAQTGLGRI EPLQALAFSH RLEDLFGRYR 

       310        320        330        340        350        360 
PEVVRAQMNL LTSHDTPRLL SLMRGSVERA RLALALLFLL PGNPTVYYGE EVGMAGGKDP 

       370        380        390        400        410        420 
ENRGGMVWEE ARWQKDLRET VKRLARLRKE HPALRTAPYL RIYAQDGHLA FARGPYLAVV 

       430        440        450        460        470 
NASPHPFRQD FPLHGVFPRG GRAVDLLSGE VCTPQGGRLC GPVLPPFSLA LWREA

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Thermus thermophilus HB8." Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S. Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HB8 / ATCC 27634 / DSM 579.
[2]	"Crystal Structure of Ttha1563 from Thermus thermophilus HB8." Niwa H., Shimada A., Matsunaga E., Kuramitsu S., Yokoyama S. Submitted (MAY-2007) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) IN COMPLEX WITH GLUCOSE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AP008226 Genomic DNA. Translation: BAD71386.1.

RefSeq

YP_144829.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2Z1K	X-ray	2.30	A/B/C/D	1-475	[»]

ProteinModelPortal

Q5SI17.

SMR

Q5SI17. Positions 2-475.

ModBase

Search...

Protein-protein interaction databases

STRING

Q5SI17.

Protein family/group databases

CAZy

GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

3167922.

GenomeReviews

Gene locus TTHA1563 in contig AP008226_GR.

KEGG

ttj:TTHA1563.

NMPDR

fig|300852.3.peg.1875.

PATRIC

23958083. VBITheThe93045_1534.

Phylogenomic databases

eggNOG

COG0366.

HOGENOM

HBG726713.

OMA

ETVWYQI.

PhylomeDB

Q5SI17.

ProtClustDB

CLSK738286.

Enzyme and pathway databases

BioCyc

TTHE300852:TTHA1563-MONOMER.

Family and domain databases

InterPro

IPR015902. Alpha_amylase.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]

Gene3D

G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.

PANTHER

PTHR10357. Alpha_amylase. 1 hit.

Pfam

PF00128. Alpha-amylase. 1 hit.
[Graphical view]

SMART

SM00642. Aamy. 1 hit.
[Graphical view]

SUPFAM

SSF51445. Glyco_hydro_cat. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q5SI17_THET8

Accession

Primary (citable) accession number: Q5SI17

Entry history

Integrated into UniProtKB/TrEMBL:	December 21, 2004
Last sequence update:	December 21, 2004
Last modified:	December 14, 2011
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)