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Protein

50S ribosomal protein L25

Gene

rplY

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

This is one of 3 proteins that mediate the attachment of the 5S rRNA onto the large ribosomal subunit.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1595-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L25
Short name:
TL5
Gene namesi
Name:rplY
Synonyms:rpl25, rptL5
Ordered Locus Names:TTHA1589
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001816081 – 20650S ribosomal protein L25Add BLAST206

Proteomic databases

PRIDEiQ5SHZ1

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts the 5S rRNA; has been isolated in a complex with 5S rRNA and RL5, 5S rRNA and DNA binding protein II; 5S rRNA and RL18; 5S rRNA, RL5 and DNA binding protein II (Ref. 4).

Protein-protein interaction databases

STRINGi300852.TTHA1589

Structurei

Secondary structure

1206
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 6Combined sources3
Helixi15 – 20Combined sources6
Beta strandi26 – 29Combined sources4
Beta strandi34 – 37Combined sources4
Helixi41 – 50Combined sources10
Beta strandi51 – 55Combined sources5
Beta strandi57 – 60Combined sources4
Beta strandi66 – 75Combined sources10
Beta strandi78 – 80Combined sources3
Beta strandi85 – 90Combined sources6
Beta strandi92 – 94Combined sources3
Beta strandi97 – 101Combined sources5
Beta strandi104 – 106Combined sources3
Turni110 – 112Combined sources3
Beta strandi116 – 118Combined sources3
Beta strandi122 – 127Combined sources6
Helixi130 – 132Combined sources3
Beta strandi139 – 143Combined sources5
Beta strandi151 – 153Combined sources3
Beta strandi173 – 175Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RZ/YZ1-206[»]
1VY4X-ray2.60BZ/DZ1-206[»]
1VY5X-ray2.55BZ/DZ1-206[»]
1VY6X-ray2.90BZ/DZ1-206[»]
1VY7X-ray2.80BZ/DZ1-206[»]
4L47X-ray3.22RZ/YZ1-206[»]
4L71X-ray3.90RZ/YZ1-206[»]
4LELX-ray3.90RZ/YZ1-206[»]
4LFZX-ray3.92RZ/YZ1-206[»]
4LNTX-ray2.94RZ/YZ1-206[»]
4LSKX-ray3.48RZ/YZ1-206[»]
4LT8X-ray3.14RZ/YZ1-206[»]
4P6FX-ray3.60RZ/YZ1-206[»]
4P70X-ray3.68RZ/YZ1-206[»]
4TUAX-ray3.60RZ/YZ1-206[»]
4TUBX-ray3.60RZ/YZ1-206[»]
4TUCX-ray3.60RZ/YZ1-206[»]
4TUDX-ray3.60RZ/YZ1-206[»]
4TUEX-ray3.50RZ/YZ1-206[»]
4V42X-ray5.50V1-206[»]
4V4XX-ray5.00BY1-206[»]
4V4YX-ray5.50BY1-206[»]
4V4ZX-ray4.51BY1-206[»]
4V51X-ray2.80BZ/DZ1-206[»]
4V5AX-ray3.50BZ/DZ1-206[»]
4V5CX-ray3.30BZ/DZ1-206[»]
4V5DX-ray3.50BZ/DZ1-206[»]
4V5EX-ray3.45BZ/DZ1-206[»]
4V5FX-ray3.60BZ/DZ1-206[»]
4V5GX-ray3.60BZ/DZ1-206[»]
4V5JX-ray3.10BZ/DZ1-206[»]
4V5KX-ray3.20BZ/DZ1-206[»]
4V5LX-ray3.10BZ1-206[»]
4V5Melectron microscopy7.80BZ1-206[»]
4V5Nelectron microscopy7.60BZ1-206[»]
4V5PX-ray3.10BZ/DZ1-206[»]
4V5QX-ray3.10BZ/DZ1-206[»]
4V5RX-ray3.10BZ/DZ1-206[»]
4V5SX-ray3.10BZ/DZ1-206[»]
4V68electron microscopy6.40BZ3-179[»]
4V6AX-ray3.10BZ/DZ1-206[»]
4V6FX-ray3.10AV/DV1-206[»]
4V6GX-ray3.50BV/DV1-206[»]
4V7JX-ray3.30AZ/BZ1-206[»]
4V7KX-ray3.60AZ/BZ1-206[»]
4V7LX-ray3.00BZ/DZ1-206[»]
4V7MX-ray3.45BZ/DZ1-206[»]
4V7WX-ray3.00BZ/DZ1-206[»]
4V7XX-ray3.00BZ/DZ1-206[»]
4V7YX-ray3.00BZ/DZ1-206[»]
4V7ZX-ray3.10BZ/DZ1-206[»]
4V87X-ray3.10AV/DV1-179[»]
4V8AX-ray3.20AZ/BZ1-206[»]
4V8BX-ray3.00BV/DV1-206[»]
4V8CX-ray3.30AV/BV1-206[»]
4V8DX-ray3.00BV/DV1-206[»]
4V8EX-ray3.30AV/CV1-206[»]
4V8FX-ray3.30AV/DV1-206[»]
4V8GX-ray3.00BZ/DZ1-206[»]
4V8HX-ray3.10BZ/DZ1-206[»]
4V8IX-ray2.70BZ/DZ1-206[»]
4V8JX-ray3.90BZ/DZ1-206[»]
4V8NX-ray3.10BZ/DZ1-206[»]
4V8OX-ray3.80BZ1-206[»]
4V8QX-ray3.10AZ1-206[»]
4V8UX-ray3.70BZ/DZ1-206[»]
4V8XX-ray3.35BZ/DZ1-206[»]
4V90X-ray2.95BZ2-206[»]
4V95X-ray3.20BZ/DZ1-206[»]
4V97X-ray3.52BZ/DZ1-206[»]
4V9AX-ray3.30BV/DV1-206[»]
4V9BX-ray3.10BV/DV1-206[»]
4V9HX-ray2.86BZ1-206[»]
4V9IX-ray3.30BZ/DZ3-178[»]
4V9RX-ray3.00BZ/DZ1-206[»]
4V9SX-ray3.10BZ/DZ1-206[»]
4W2EX-ray2.90Z1-206[»]
4W2FX-ray2.40BZ/DZ1-206[»]
4W2GX-ray2.55BZ/DZ1-206[»]
4W2HX-ray2.70BZ/DZ1-206[»]
4W2IX-ray2.70BZ/DZ1-206[»]
4W4GX-ray3.30RZ/YZ1-206[»]
4WPOX-ray2.80AZ/CZ1-206[»]
4WQ1X-ray3.10D51-206[»]
H81-175[»]
4WQFX-ray2.80AZ/CZ1-206[»]
4WQRX-ray3.15D5/H81-206[»]
4WQUX-ray2.80AZ/CZ1-206[»]
4WQYX-ray2.80AZ/CZ1-206[»]
4WR6X-ray3.05D5/H81-206[»]
4WRAX-ray3.05D5/H81-206[»]
4WROX-ray3.05H81-206[»]
4WSDX-ray2.95D5/H81-206[»]
4WSMX-ray3.30D5/H81-206[»]
4WT1X-ray3.05D5/H81-206[»]
4WT8X-ray3.40CZ/DZ3-178[»]
4WU1X-ray3.20D5/H81-206[»]
4WZDX-ray3.10D5/H81-206[»]
4WZOX-ray3.30D5/H81-206[»]
4Y4OX-ray2.301Z/2Z1-206[»]
4Y4PX-ray2.501Z/2Z1-206[»]
4YPBX-ray3.40RZ/YZ1-206[»]
4YZVX-ray3.10RZ/YZ1-206[»]
4Z3SX-ray2.651Z/2Z1-206[»]
4Z8CX-ray2.901Z/2Z1-206[»]
4ZERX-ray3.101Z/2Z1-203[»]
4ZSNX-ray3.60RZ/YZ1-206[»]
5A9Zelectron microscopy4.70AW1-180[»]
5AA0electron microscopy5.00AW1-180[»]
5CZPX-ray3.30RZ/YZ1-206[»]
5D8BX-ray3.63PB/T1-206[»]
5DFEX-ray3.10RZ/YZ1-206[»]
5DOXX-ray3.101Z/2Z1-206[»]
5DOYX-ray2.601Z/2Z1-206[»]
5E7KX-ray3.20D5/H81-206[»]
5E81X-ray2.95D5/H81-206[»]
5EL4X-ray3.15D5/H81-206[»]
5EL5X-ray3.15D5/H81-206[»]
5EL6X-ray3.10D5/H81-206[»]
5EL7X-ray3.15D5/H81-206[»]
5F8KX-ray2.801Z/2Z1-203[»]
5FDUX-ray2.901Z/2Z1-203[»]
5FDVX-ray2.801Z/2Z1-203[»]
5HAUX-ray3.001X/2X1-206[»]
5HCPX-ray2.891Z/2Z1-206[»]
5HCQX-ray2.801Z/2Z1-206[»]
5HCRX-ray2.801Z/2Z1-206[»]
5HD1X-ray2.701Z/2Z1-206[»]
5IB7X-ray2.99D5/H81-206[»]
5IB8X-ray3.13D5/H81-206[»]
5IBBX-ray2.96D5/H81-206[»]
5IMQelectron microscopy3.80r1-206[»]
5IMRelectron microscopy-r1-206[»]
5J30X-ray3.20RZ/YZ1-206[»]
5J3CX-ray3.04RZ/YZ1-206[»]
5J4BX-ray2.601Z/2Z1-206[»]
5J4CX-ray2.801Z/2Z1-206[»]
5J8BX-ray2.60Z1-206[»]
5NDKX-ray2.95D5/H81-206[»]
5OT7electron microscopy3.8063-180[»]
5UQ7electron microscopy3.50Z1-187[»]
5UQ8electron microscopy3.20Z1-187[»]
5VP2X-ray2.801Z/2Z1-206[»]
5W4KX-ray2.701Z/2Z1-206[»]
5WISX-ray2.701Z/2Z1-206[»]
5WITX-ray2.601Z/2Z1-206[»]
6FKRX-ray3.201Z/2Z1-203[»]
ProteinModelPortaliQ5SHZ1
SMRiQ5SHZ1
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHZ1

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4107UH2 Bacteria
COG1825 LUCA
HOGENOMiHOG000214906
KOiK02897
OMAiGDSIHIS
PhylomeDBiQ5SHZ1

Family and domain databases

CDDicd00495 Ribosomal_L25_TL5_CTC, 1 hit
Gene3Di2.170.120.20, 1 hit
2.40.240.10, 1 hit
HAMAPiMF_01334 Ribosomal_L25_CTC, 1 hit
InterProiView protein in InterPro
IPR020056 Rbsml_L25/Gln-tRNA_synth_N
IPR029751 Ribosomal_L25
IPR011035 Ribosomal_L25/Gln-tRNA_synth
IPR020057 Ribosomal_L25_b-dom
IPR037121 Ribosomal_L25_C
IPR001021 Ribosomal_L25_long
PfamiView protein in Pfam
PF01386 Ribosomal_L25p, 1 hit
PF14693 Ribosomal_TL5_C, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD012503 Ribosomal_L25, 1 hit
SUPFAMiSSF50715 SSF50715, 1 hit
TIGRFAMsiTIGR00731 bL25_bact_ctc, 1 hit

Sequencei

Sequence statusi: Complete.

Q5SHZ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEYRLKAYYR EGEKPSALRR AGKLPGVMYN RHLNRKVYVD LVEFDKVFRQ
60 70 80 90 100
ASIHHVIVLE LPDGQSLPTL VRQVNLDKRR RRPEHVDFFV LSDEPVEMYV
110 120 130 140 150
PLRFVGTPAG VRAGGVLQEI HRDILVKVSP RNIPEFIEVD VSGLEIGDSL
160 170 180 190 200
HASDLKLPPG VELAVSPEET IAAVVPPEDV EKLAEEAAAE VAEPEVIKKG

KEEEEE
Length:206
Mass (Da):23,205
Last modified:December 21, 2004 - v1
Checksum:iACC20EC1279181CD
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti43 – 45EFD → QRF AA sequence (Ref. 2) Curated3
Sequence conflicti60 – 70ELPDGQSLPTL → QLRRGTRLSPE AA sequence (Ref. 2) CuratedAdd BLAST11

Mass spectrometryi

Molecular mass is 23207 Da from positions 1 - 206. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA Translation: BAD71412.1
RefSeqiWP_011173631.1, NC_006461.1
YP_144855.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD71412; BAD71412; BAD71412
GeneIDi3169859
KEGGittj:TTHA1589
PATRICifig|300852.9.peg.1559

Similar proteinsi

Entry informationi

Entry nameiRL25_THET8
AccessioniPrimary (citable) accession number: Q5SHZ1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: May 23, 2018
This is version 119 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

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