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Protein

50S ribosomal protein L36

Gene

rpmJ

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+By similarityNote: Binds 1 zinc ion per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi11ZincBy similarity1
Metal bindingi14ZincBy similarity1
Metal bindingi27ZincBy similarity1
Metal bindingi32ZincBy similarity1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L36
Alternative name(s):
Ribosomal protein B
Gene namesi
Name:rpmJ
Ordered Locus Names:TTHA1668
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001262841 – 3750S ribosomal protein L36Add BLAST37

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1668.

Structurei

Secondary structure

137
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 6Combined sources4
Beta strandi11 – 13Combined sources3
Beta strandi16 – 19Combined sources4
Beta strandi22 – 25Combined sources4
Helixi30 – 32Combined sources3
Beta strandi34 – 36Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VY4X-ray2.60B9/D91-37[»]
1VY5X-ray2.55B9/D91-37[»]
1VY6X-ray2.90B9/D91-37[»]
1VY7X-ray2.80B9/D91-37[»]
4P6FX-ray3.60R9/Y91-37[»]
4P70X-ray3.68R9/Y91-37[»]
4TUAX-ray3.60R9/Y91-37[»]
4TUBX-ray3.60R9/Y91-37[»]
4TUCX-ray3.60R9/Y91-37[»]
4TUDX-ray3.60R9/Y91-37[»]
4TUEX-ray3.50R9/Y91-37[»]
4V4PX-ray5.50911-36[»]
4V4XX-ray5.00B81-37[»]
4V4YX-ray5.50B81-37[»]
4V4ZX-ray4.51B81-37[»]
4V51X-ray2.8091-37[»]
4V5CX-ray3.30B9/D91-37[»]
4V5DX-ray3.50B9/D91-37[»]
4V5EX-ray3.45B9/D91-37[»]
4V5FX-ray3.60B9/D91-37[»]
4V5GX-ray3.60B9/D91-37[»]
4V5JX-ray3.10B9/D91-37[»]
4V5KX-ray3.20B9/D91-37[»]
4V5LX-ray3.10B91-37[»]
4V5Melectron microscopy7.80B91-37[»]
4V5Nelectron microscopy7.60B91-37[»]
4V5PX-ray3.10B9/D91-37[»]
4V5QX-ray3.10B9/D91-37[»]
4V5RX-ray3.10B9/D91-37[»]
4V5SX-ray3.10B9/D91-37[»]
4V68electron microscopy6.40B92-36[»]
4V6AX-ray3.10B9/D91-37[»]
4V7JX-ray3.30A9/B91-37[»]
4V7KX-ray3.60A9/B91-37[»]
4V7LX-ray3.00B9/D91-37[»]
4V7MX-ray3.45B9/D91-37[»]
4V8GX-ray3.00B9/D91-37[»]
4V8HX-ray3.10B9/D91-37[»]
4V8IX-ray2.70B9/D91-37[»]
4V8JX-ray3.90B9/D91-37[»]
4V8NX-ray3.10B9/D91-37[»]
4V8OX-ray3.80B91-37[»]
4V8QX-ray3.10A91-37[»]
4V8UX-ray3.70B9/D91-37[»]
4V8XX-ray3.35B9/D91-37[»]
4V90X-ray2.95B91-37[»]
4V95X-ray3.20B9/D91-37[»]
4V97X-ray3.52B9/D91-37[»]
4V9HX-ray2.86B91-37[»]
4V9IX-ray3.30B9/D92-37[»]
4V9RX-ray3.00B9/D91-37[»]
4V9SX-ray3.10B9/D91-37[»]
4W2EX-ray2.9091-37[»]
4W2FX-ray2.40B9/D91-37[»]
4W2GX-ray2.55B9/D91-37[»]
4W2HX-ray2.70B9/D91-37[»]
4W2IX-ray2.70B9/D91-37[»]
4W4GX-ray3.30R9/Y91-37[»]
4WPOX-ray2.80A9/C91-37[»]
4WQFX-ray2.80A9/C91-37[»]
4WQUX-ray2.80A9/C91-37[»]
4WQYX-ray2.80A9/C91-37[»]
4WT8X-ray3.40C0/D02-37[»]
4Y4OX-ray2.3019/291-37[»]
4Y4PX-ray2.5019/291-37[»]
4YPBX-ray3.40R9/Y91-37[»]
4YZVX-ray3.10R9/Y91-37[»]
4Z3SX-ray2.6519/291-37[»]
4Z8CX-ray2.9019/291-37[»]
4ZERX-ray3.1019/291-37[»]
4ZSNX-ray3.60R9/Y91-37[»]
5A9Zelectron microscopy4.70Af1-37[»]
5AA0electron microscopy5.00Af1-37[»]
5CZPX-ray3.30R9/Y91-37[»]
5DFEX-ray3.10R9/Y91-37[»]
5DOXX-ray3.1019/291-37[»]
5DOYX-ray2.6019/291-37[»]
5F8KX-ray2.8019/291-37[»]
5FDUX-ray2.9019/291-37[»]
5FDVX-ray2.8019/291-37[»]
5HAUX-ray3.0017/271-37[»]
5HCPX-ray2.8919/291-37[»]
5HCQX-ray2.8019/291-37[»]
5HCRX-ray2.8019/291-37[»]
5HD1X-ray2.7019/291-37[»]
5IMQelectron microscopy3.8011-37[»]
5IMRelectron microscopy-11-37[»]
5J30X-ray3.20R9/Y91-37[»]
5J3CX-ray3.04R9/Y91-37[»]
5J4BX-ray2.6019/291-37[»]
5J4CX-ray2.8019/291-37[»]
5J8BX-ray2.6091-37[»]
ProteinModelPortaliQ5SHR2.
SMRiQ5SHR2.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHR2.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG41067V7. Bacteria.
COG0257. LUCA.
HOGENOMiHOG000111584.
KOiK02919.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36. 1 hit.
InterProiView protein in InterPro
IPR000473. Ribosomal_L36.
PfamiView protein in Pfam
PF00444. Ribosomal_L36. 1 hit.
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00828. RIBOSOMAL_L36. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5SHR2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30 
MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG
Length:37
Mass (Da):4,421
Last modified:December 21, 2004 - v1
Checksum:i439072E1737E2AE8
GO

Mass spectrometryi

Molecular mass is 4422 Da from positions 1 - 37. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024328 Genomic DNA. Translation: BAA75545.1.
AP008226 Genomic DNA. Translation: BAD71491.1.
RefSeqiWP_008633370.1. NC_006461.1.
YP_144934.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71491; BAD71491; BAD71491.
GeneIDi3167970.
KEGGittj:TTHA1668.
PATRICifig|300852.9.peg.1638.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL36_THET8
AccessioniPrimary (citable) accession number: Q5SHR2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: June 7, 2017
This is version 102 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families