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Q5SHR2

- RL36_THET8

UniProt

Q5SHR2 - RL36_THET8

Protein

50S ribosomal protein L36

Gene

rpmJ

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Cofactori

    Binds 1 zinc ion per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi11 – 111ZincBy similarity
    Metal bindingi14 – 141ZincBy similarity
    Metal bindingi27 – 271ZincBy similarity
    Metal bindingi32 – 321ZincBy similarity

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    Metal-binding, Zinc

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-1707-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L36
    Alternative name(s):
    Ribosomal protein B
    Gene namesi
    Name:rpmJ
    Ordered Locus Names:TTHA1668
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 373750S ribosomal protein L36PRO_0000126284Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.

    Protein-protein interaction databases

    STRINGi300852.TTHA1668.

    Structurei

    Secondary structure

    1
    37
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi3 – 53
    Beta strandi11 – 133
    Beta strandi15 – 195
    Beta strandi22 – 265
    Beta strandi27 – 293
    Helixi30 – 323
    Beta strandi34 – 363

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1YL3X-ray5.50911-36[»]
    2HGJX-ray5.0081-37[»]
    2HGQX-ray5.5081-37[»]
    2HGUX-ray4.5181-37[»]
    2J01X-ray2.8091-37[»]
    2J03X-ray2.8091-37[»]
    2WDIX-ray3.3091-37[»]
    2WDJX-ray3.3091-37[»]
    2WDLX-ray3.5091-37[»]
    2WDNX-ray3.5091-37[»]
    2WH2X-ray3.4591-37[»]
    2WH4X-ray3.4591-37[»]
    2WRJX-ray3.6091-37[»]
    2WRLX-ray3.6091-37[»]
    2WROX-ray3.6091-37[»]
    2WRRX-ray3.6091-37[»]
    2X9SX-ray3.1091-37[»]
    2X9UX-ray3.1091-37[»]
    2XG0X-ray3.2091-37[»]
    2XG2X-ray3.2091-37[»]
    2XQEX-ray3.1091-37[»]
    2XTGelectron microscopy7.8091-37[»]
    2XUXelectron microscopy7.6091-37[»]
    2Y0VX-ray3.1091-37[»]
    2Y0XX-ray3.1091-37[»]
    2Y0ZX-ray3.1091-37[»]
    2Y11X-ray3.1091-37[»]
    2Y13X-ray3.1091-37[»]
    2Y15X-ray3.1091-37[»]
    2Y17X-ray3.1091-37[»]
    2Y19X-ray3.1091-37[»]
    3FINelectron microscopy6.4092-36[»]
    3HUXX-ray3.1091-37[»]
    3HUZX-ray3.1091-37[»]
    3KIRX-ray3.3091-37[»]
    3KITX-ray3.3091-37[»]
    3KIWX-ray3.6091-37[»]
    3KIYX-ray3.6091-37[»]
    3KNIX-ray3.0091-37[»]
    3KNKX-ray3.0091-37[»]
    3KNMX-ray3.4591-37[»]
    3KNOX-ray3.4591-37[»]
    3V23X-ray3.0091-37[»]
    3V25X-ray3.0091-37[»]
    3V27X-ray3.1091-37[»]
    3V29X-ray3.1091-37[»]
    3V2DX-ray2.7091-37[»]
    3V2FX-ray2.7091-37[»]
    3V6WX-ray3.9091-37[»]
    3V6XX-ray3.9091-37[»]
    3ZN9X-ray3.1091-37[»]
    3ZNEX-ray3.1091-37[»]
    3ZVPX-ray3.8091-37[»]
    4ABSX-ray3.1091-37[»]
    4B8GX-ray3.7091-37[»]
    4B8IX-ray3.7091-37[»]
    4BTDX-ray2.9591-37[»]
    4BYCX-ray3.3591-37[»]
    4BYEX-ray3.3591-37[»]
    4DHAX-ray3.2091-37[»]
    4DHCX-ray3.2091-37[»]
    4EJBX-ray3.5291-37[»]
    4EJCX-ray3.5291-37[»]
    4JUXX-ray2.8691-37[»]
    4K0MX-ray3.3092-37[»]
    4K0QX-ray3.3092-37[»]
    4NVVX-ray3.0091-37[»]
    4NVXX-ray3.0091-37[»]
    4NVZX-ray3.1091-37[»]
    4NW1X-ray3.1091-37[»]
    ProteinModelPortaliQ5SHR2.
    SMRiQ5SHR2. Positions 1-37.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ5SHR2.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L36P family.Curated

    Phylogenomic databases

    eggNOGiCOG0257.
    HOGENOMiHOG000111584.
    KOiK02919.
    OrthoDBiEOG676ZC2.

    Family and domain databases

    HAMAPiMF_00251. Ribosomal_L36.
    InterProiIPR000473. Ribosomal_L36.
    [Graphical view]
    PANTHERiPTHR18804. PTHR18804. 1 hit.
    PfamiPF00444. Ribosomal_L36. 1 hit.
    [Graphical view]
    SUPFAMiSSF57840. SSF57840. 1 hit.
    TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
    PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5SHR2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG                 37
    Length:37
    Mass (Da):4,421
    Last modified:December 21, 2004 - v1
    Checksum:i439072E1737E2AE8
    GO

    Mass spectrometryi

    Molecular mass is 4422 Da from positions 1 - 37. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB024328 Genomic DNA. Translation: BAA75545.1.
    AP008226 Genomic DNA. Translation: BAD71491.1.
    RefSeqiYP_144934.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD71491; BAD71491; BAD71491.
    GeneIDi3167970.
    KEGGittj:TTHA1668.
    PATRICi23958291. VBITheThe93045_1638.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB024328 Genomic DNA. Translation: BAA75545.1 .
    AP008226 Genomic DNA. Translation: BAD71491.1 .
    RefSeqi YP_144934.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1YL3 X-ray 5.50 9 11-36 [» ]
    2HGJ X-ray 5.00 8 1-37 [» ]
    2HGQ X-ray 5.50 8 1-37 [» ]
    2HGU X-ray 4.51 8 1-37 [» ]
    2J01 X-ray 2.80 9 1-37 [» ]
    2J03 X-ray 2.80 9 1-37 [» ]
    2WDI X-ray 3.30 9 1-37 [» ]
    2WDJ X-ray 3.30 9 1-37 [» ]
    2WDL X-ray 3.50 9 1-37 [» ]
    2WDN X-ray 3.50 9 1-37 [» ]
    2WH2 X-ray 3.45 9 1-37 [» ]
    2WH4 X-ray 3.45 9 1-37 [» ]
    2WRJ X-ray 3.60 9 1-37 [» ]
    2WRL X-ray 3.60 9 1-37 [» ]
    2WRO X-ray 3.60 9 1-37 [» ]
    2WRR X-ray 3.60 9 1-37 [» ]
    2X9S X-ray 3.10 9 1-37 [» ]
    2X9U X-ray 3.10 9 1-37 [» ]
    2XG0 X-ray 3.20 9 1-37 [» ]
    2XG2 X-ray 3.20 9 1-37 [» ]
    2XQE X-ray 3.10 9 1-37 [» ]
    2XTG electron microscopy 7.80 9 1-37 [» ]
    2XUX electron microscopy 7.60 9 1-37 [» ]
    2Y0V X-ray 3.10 9 1-37 [» ]
    2Y0X X-ray 3.10 9 1-37 [» ]
    2Y0Z X-ray 3.10 9 1-37 [» ]
    2Y11 X-ray 3.10 9 1-37 [» ]
    2Y13 X-ray 3.10 9 1-37 [» ]
    2Y15 X-ray 3.10 9 1-37 [» ]
    2Y17 X-ray 3.10 9 1-37 [» ]
    2Y19 X-ray 3.10 9 1-37 [» ]
    3FIN electron microscopy 6.40 9 2-36 [» ]
    3HUX X-ray 3.10 9 1-37 [» ]
    3HUZ X-ray 3.10 9 1-37 [» ]
    3KIR X-ray 3.30 9 1-37 [» ]
    3KIT X-ray 3.30 9 1-37 [» ]
    3KIW X-ray 3.60 9 1-37 [» ]
    3KIY X-ray 3.60 9 1-37 [» ]
    3KNI X-ray 3.00 9 1-37 [» ]
    3KNK X-ray 3.00 9 1-37 [» ]
    3KNM X-ray 3.45 9 1-37 [» ]
    3KNO X-ray 3.45 9 1-37 [» ]
    3V23 X-ray 3.00 9 1-37 [» ]
    3V25 X-ray 3.00 9 1-37 [» ]
    3V27 X-ray 3.10 9 1-37 [» ]
    3V29 X-ray 3.10 9 1-37 [» ]
    3V2D X-ray 2.70 9 1-37 [» ]
    3V2F X-ray 2.70 9 1-37 [» ]
    3V6W X-ray 3.90 9 1-37 [» ]
    3V6X X-ray 3.90 9 1-37 [» ]
    3ZN9 X-ray 3.10 9 1-37 [» ]
    3ZNE X-ray 3.10 9 1-37 [» ]
    3ZVP X-ray 3.80 9 1-37 [» ]
    4ABS X-ray 3.10 9 1-37 [» ]
    4B8G X-ray 3.70 9 1-37 [» ]
    4B8I X-ray 3.70 9 1-37 [» ]
    4BTD X-ray 2.95 9 1-37 [» ]
    4BYC X-ray 3.35 9 1-37 [» ]
    4BYE X-ray 3.35 9 1-37 [» ]
    4DHA X-ray 3.20 9 1-37 [» ]
    4DHC X-ray 3.20 9 1-37 [» ]
    4EJB X-ray 3.52 9 1-37 [» ]
    4EJC X-ray 3.52 9 1-37 [» ]
    4JUX X-ray 2.86 9 1-37 [» ]
    4K0M X-ray 3.30 9 2-37 [» ]
    4K0Q X-ray 3.30 9 2-37 [» ]
    4NVV X-ray 3.00 9 1-37 [» ]
    4NVX X-ray 3.00 9 1-37 [» ]
    4NVZ X-ray 3.10 9 1-37 [» ]
    4NW1 X-ray 3.10 9 1-37 [» ]
    ProteinModelPortali Q5SHR2.
    SMRi Q5SHR2. Positions 1-37.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA1668.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD71491 ; BAD71491 ; BAD71491 .
    GeneIDi 3167970.
    KEGGi ttj:TTHA1668.
    PATRICi 23958291. VBITheThe93045_1638.

    Phylogenomic databases

    eggNOGi COG0257.
    HOGENOMi HOG000111584.
    KOi K02919.
    OrthoDBi EOG676ZC2.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-1707-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q5SHR2.

    Family and domain databases

    HAMAPi MF_00251. Ribosomal_L36.
    InterProi IPR000473. Ribosomal_L36.
    [Graphical view ]
    PANTHERi PTHR18804. PTHR18804. 1 hit.
    Pfami PF00444. Ribosomal_L36. 1 hit.
    [Graphical view ]
    SUPFAMi SSF57840. SSF57840. 1 hit.
    TIGRFAMsi TIGR01022. rpmJ_bact. 1 hit.
    PROSITEi PS00828. RIBOSOMAL_L36. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
      Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
      Endocyt. Cell Res. 11:41-58(1995)
      Cited for: PROTEIN SEQUENCE.
    2. "Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein."
      Wada T., Yamazaki T., Kuramitsu S., Kyogoku Y.
      J. Biochem. 125:143-150(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    3. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    4. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
      Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
      Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 1-29.
    5. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.

    Entry informationi

    Entry nameiRL36_THET8
    AccessioniPrimary (citable) accession number: Q5SHR2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 29, 2005
    Last sequence update: December 21, 2004
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3