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Q5SHR2 (RL36_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 71. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L36
Alternative name(s):
Ribosomal protein B
Gene names
Name:rpmJ
Ordered Locus Names:TTHA1668
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length37 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Cofactor

Binds 1 zinc ion per subunit By similarity. HAMAP-Rule MF_00251

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L36P family.

Mass spectrometry

Molecular mass is 4422 Da from positions 1 - 37. Determined by MALDI. Ref.5

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 373750S ribosomal protein L36 HAMAP-Rule MF_00251
PRO_0000126284

Sites

Metal binding111Zinc By similarity
Metal binding141Zinc By similarity
Metal binding271Zinc By similarity
Metal binding321Zinc By similarity

Secondary structure

............. 37
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5SHR2 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: 439072E1737E2AE8

FASTA374,421
        10         20         30 
MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG 

« Hide

References

« Hide 'large scale' references
[1]"The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
Endocyt. Cell Res. 11:41-58(1995)
Cited for: PROTEIN SEQUENCE.
[2]"Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein."
Wada T., Yamazaki T., Kuramitsu S., Kyogoku Y.
J. Biochem. 125:143-150(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[4]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-29.
[5]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB024328 Genomic DNA. Translation: BAA75545.1.
AP008226 Genomic DNA. Translation: BAD71491.1.
RefSeqYP_144934.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1YL3X-ray5.5091-36[»]
2HGJX-ray5.0081-37[»]
2HGQX-ray5.5081-37[»]
2HGUX-ray4.5181-37[»]
2J01X-ray2.8091-37[»]
2J03X-ray2.8091-37[»]
2WDIX-ray3.3091-37[»]
2WDJX-ray3.3091-37[»]
2WDLX-ray3.5091-37[»]
2WDNX-ray3.5091-37[»]
2WH2X-ray3.4591-37[»]
2WH4X-ray3.4591-37[»]
2WRJX-ray3.6091-37[»]
2WRLX-ray3.6091-37[»]
2WROX-ray3.6091-37[»]
2WRRX-ray3.6091-37[»]
2X9SX-ray3.1091-37[»]
2X9UX-ray3.1091-37[»]
2XG0X-ray3.2091-37[»]
2XG2X-ray3.2091-37[»]
2XQEX-ray3.1091-37[»]
2XTGelectron microscopy7.8091-37[»]
2XUXelectron microscopy7.6091-37[»]
2Y0VX-ray3.1091-37[»]
2Y0XX-ray3.1091-37[»]
2Y0ZX-ray3.1091-37[»]
2Y11X-ray3.1091-37[»]
2Y13X-ray3.1091-37[»]
2Y15X-ray3.1091-37[»]
2Y17X-ray3.1091-37[»]
2Y19X-ray3.1091-37[»]
3FINelectron microscopy6.4092-36[»]
3HUXX-ray3.1091-37[»]
3HUZX-ray3.1091-37[»]
3KIRX-ray3.3091-37[»]
3KITX-ray3.3091-37[»]
3KIWX-ray3.6091-37[»]
3KIYX-ray3.6091-37[»]
3KNIX-ray3.0091-37[»]
3KNKX-ray3.0091-37[»]
3KNMX-ray3.4591-37[»]
3KNOX-ray3.4591-37[»]
3V23X-ray3.0091-37[»]
3V25X-ray3.0091-37[»]
3V27X-ray3.1091-37[»]
3V29X-ray3.1091-37[»]
3V2DX-ray2.7091-37[»]
3V2FX-ray2.7091-37[»]
3V6WX-ray3.9091-37[»]
3V6XX-ray3.9091-37[»]
3ZN9X-ray3.1091-37[»]
3ZNEX-ray3.1091-37[»]
3ZVPX-ray3.8091-37[»]
4ABSX-ray3.1091-37[»]
4B8GX-ray3.7091-37[»]
4B8IX-ray3.7091-37[»]
4BTDX-ray2.9591-37[»]
4BYCX-ray3.3591-37[»]
4BYEX-ray3.3591-37[»]
4DHAX-ray3.2091-37[»]
4DHCX-ray3.2091-37[»]
4EJBX-ray3.5291-37[»]
4EJCX-ray3.5291-37[»]
4JUXX-ray2.8691-37[»]
4K0MX-ray3.3092-37[»]
4K0QX-ray3.3092-37[»]
ProteinModelPortalQ5SHR2.
SMRQ5SHR2. Positions 1-37.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA1668.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD71491; BAD71491; BAD71491.
GeneID3167970.
KEGGttj:TTHA1668.
PATRIC23958291. VBITheThe93045_1638.

Phylogenomic databases

eggNOGCOG0257.
HOGENOMHOG000111584.
KOK02919.
OrthoDBEOG676ZC2.
ProtClustDBPRK00465.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-1707-MONOMER.

Family and domain databases

HAMAPMF_00251. Ribosomal_L36.
InterProIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERPTHR18804. PTHR18804. 1 hit.
PfamPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMSSF57840. SSF57840. 1 hit.
TIGRFAMsTIGR01022. rpmJ_bact. 1 hit.
PROSITEPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ5SHR2.

Entry information

Entry nameRL36_THET8
AccessionPrimary (citable) accession number: Q5SHR2
Entry history
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: February 19, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references