50S ribosomal protein L36 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

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Q5SHR2 (RL36_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 64. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
50S ribosomal protein L36

Alternative name(s):
Ribosomal protein B

Gene names

Name:	rpmJ
Ordered Locus Names:	TTHA1668

Organism

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]

Taxonomic identifier

300852 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length	37 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Cofactor	Binds 1 zinc ion per subunit By similarity.
Subunit structure	Part of the 50S ribosomal subunit.
Sequence similarities	Belongs to the ribosomal protein L36P family.
Mass spectrometry	Molecular mass is 4422 Da from positions 1 - 37. Determined by MALDI. Ref.5

Ontologies

Keywords
Ligand	Metal-binding Zinc
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome Direct protein sequencing Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 37

50S ribosomal protein L36 HAMAP-Rule MF_00251

PRO_0000126284

Sites

Metal binding

Zinc By similarity

Metal binding

Zinc By similarity

Metal binding

Zinc By similarity

Metal binding

Zinc By similarity

Secondary structure

Helix Strand Turn

Details...

Sequences

Sequence

Length

Mass (Da)

Tools

Q5SHR2 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: 439072E1737E2AE8
Show »

FASTA

4,421

        10         20         30 
MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif." Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A. Endocyt. Cell Res. 11:41-58(1995) Cited for: PROTEIN SEQUENCE.
[2]	"Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein." Wada T., Yamazaki T., Kuramitsu S., Kyogoku Y. J. Biochem. 125:143-150(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]	"Complete genome sequence of Thermus thermophilus HB8." Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S. Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HB8 / ATCC 27634 / DSM 579.
[4]	"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus." Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T. Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 1-29.
[5]	"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry." Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A. Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract] Cited for: MASS SPECTROMETRY.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AB024328 Genomic DNA. Translation: BAA75545.1.
AP008226 Genomic DNA. Translation: BAD71491.1.

RefSeq

YP_144934.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1YL3	X-ray	5.50	9	1-36	[»]
2HGJ	X-ray	5.00	8	1-37	[»]
2HGQ	X-ray	5.50	8	1-37	[»]
2HGU	X-ray	4.51	8	1-37	[»]
2J01	X-ray	2.80	9	1-37	[»]
2J03	X-ray	2.80	9	1-37	[»]
2WDI	X-ray	3.30	9	1-37	[»]
2WDJ	X-ray	3.30	9	1-37	[»]
2WDL	X-ray	3.50	9	1-37	[»]
2WDN	X-ray	3.50	9	1-37	[»]
2WH2	X-ray	3.45	9	1-37	[»]
2WH4	X-ray	3.45	9	1-37	[»]
2WRJ	X-ray	3.60	9	1-37	[»]
2WRL	X-ray	3.60	9	1-37	[»]
2WRO	X-ray	3.60	9	1-37	[»]
2WRR	X-ray	3.60	9	1-37	[»]
2X9S	X-ray	3.10	9	1-37	[»]
2X9U	X-ray	3.10	9	1-37	[»]
2XG0	X-ray	3.20	9	1-37	[»]
2XG2	X-ray	3.20	9	1-37	[»]
2XQE	X-ray	3.10	9	1-37	[»]
2XTG	electron microscopy	7.80	9	1-37	[»]
2XUX	electron microscopy	7.60	9	1-37	[»]
2Y0V	X-ray	3.10	9	1-37	[»]
2Y0X	X-ray	3.10	9	1-37	[»]
2Y0Z	X-ray	3.10	9	1-37	[»]
2Y11	X-ray	3.10	9	1-37	[»]
2Y13	X-ray	3.10	9	1-37	[»]
2Y15	X-ray	3.10	9	1-37	[»]
2Y17	X-ray	3.10	9	1-37	[»]
2Y19	X-ray	3.10	9	1-37	[»]
3FIN	electron microscopy	6.40	9	2-36	[»]
3HUX	X-ray	3.10	9	1-37	[»]
3HUZ	X-ray	3.10	9	1-37	[»]
3KIR	X-ray	3.30	9	1-37	[»]
3KIT	X-ray	3.30	9	1-37	[»]
3KIW	X-ray	3.60	9	1-37	[»]
3KIY	X-ray	3.60	9	1-37	[»]
3KNI	X-ray	3.00	9	1-37	[»]
3KNK	X-ray	3.00	9	1-37	[»]
3KNM	X-ray	3.45	9	1-37	[»]
3KNO	X-ray	3.45	9	1-37	[»]
3V23	X-ray	3.00	9	1-37	[»]
3V25	X-ray	3.00	9	1-37	[»]
3V27	X-ray	3.10	9	1-37	[»]
3V29	X-ray	3.10	9	1-37	[»]
3V2D	X-ray	2.70	9	1-37	[»]
3V2F	X-ray	2.70	9	1-37	[»]
3ZVP	X-ray	3.80	9	1-37	[»]
4ABS	X-ray	3.10	9	1-37	[»]
4DHA	X-ray	3.20	9	1-37	[»]
4DHC	X-ray	3.20	9	1-37	[»]

ProteinModelPortal

Q5SHR2.

SMR

Q5SHR2. Positions 1-37.

ModBase

Search...

Protein-protein interaction databases

STRING

300852.TTHA1668.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

BAD71491; BAD71491; BAD71491.

GeneID

3167970.

KEGG

ttj:TTHA1668.

PATRIC

23958291. VBITheThe93045_1638.

Phylogenomic databases

eggNOG

COG0257.

HOGENOM

HOG000111584.

K02919.

ProtClustDB

PRK00465.

Family and domain databases

HAMAP

MF_00251. Ribosomal_L36.

InterPro

IPR000473. Ribosomal_L36.
[Graphical view]

PANTHER

PTHR18804. PTHR18804. 1 hit.

Pfam

PF00444. Ribosomal_L36. 1 hit.
[Graphical view]

SUPFAM

SSF57840. Ribosomal_L36. 1 hit.

TIGRFAMs

TIGR01022. rpmJ_bact. 1 hit.

PROSITE

PS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

Q5SHR2.

Entry information

Entry name

RL36_THET8

Accession

Primary (citable) accession number: Q5SHR2

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 29, 2005
Last sequence update:	December 21, 2004
Last modified:	May 1, 2013
This is version 64 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Sites

Secondary structure

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Other

Entry information

Relevant documents