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Q5SHR2

- RL36_THET8

UniProt

Q5SHR2 - RL36_THET8

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Protein

50S ribosomal protein L36

Gene

rpmJ

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+By similarityNote: Binds 1 zinc ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi11 – 111ZincBy similarity
Metal bindingi14 – 141ZincBy similarity
Metal bindingi27 – 271ZincBy similarity
Metal bindingi32 – 321ZincBy similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1707-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L36
Alternative name(s):
Ribosomal protein B
Gene namesi
Name:rpmJ
Ordered Locus Names:TTHA1668
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 373750S ribosomal protein L36PRO_0000126284Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1668.

Structurei

Secondary structure

1
37
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 54Combined sources
Beta strandi11 – 133Combined sources
Beta strandi15 – 195Combined sources
Beta strandi22 – 265Combined sources
Beta strandi27 – 293Combined sources
Helixi30 – 323Combined sources
Beta strandi34 – 363Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VY1X-ray3.6891-37[»]
1VY3X-ray3.6891-37[»]
1YL3X-ray5.50911-36[»]
2HGJX-ray5.0081-37[»]
2HGQX-ray5.5081-37[»]
2HGUX-ray4.5181-37[»]
2J01X-ray2.8091-37[»]
2J03X-ray2.8091-37[»]
2WDIX-ray3.3091-37[»]
2WDJX-ray3.3091-37[»]
2WDLX-ray3.5091-37[»]
2WDNX-ray3.5091-37[»]
2WH2X-ray3.4591-37[»]
2WH4X-ray3.4591-37[»]
2WRJX-ray3.6091-37[»]
2WRLX-ray3.6091-37[»]
2WROX-ray3.6091-37[»]
2WRRX-ray3.6091-37[»]
2X9SX-ray3.1091-37[»]
2X9UX-ray3.1091-37[»]
2XG0X-ray3.2091-37[»]
2XG2X-ray3.2091-37[»]
2XQEX-ray3.1091-37[»]
2XTGelectron microscopy7.8091-37[»]
2XUXelectron microscopy7.6091-37[»]
2Y0VX-ray3.1091-37[»]
2Y0XX-ray3.1091-37[»]
2Y0ZX-ray3.1091-37[»]
2Y11X-ray3.1091-37[»]
2Y13X-ray3.1091-37[»]
2Y15X-ray3.1091-37[»]
2Y17X-ray3.1091-37[»]
2Y19X-ray3.1091-37[»]
3FINelectron microscopy6.4092-36[»]
3HUXX-ray3.1091-37[»]
3HUZX-ray3.1091-37[»]
3KIRX-ray3.3091-37[»]
3KITX-ray3.3091-37[»]
3KIWX-ray3.6091-37[»]
3KIYX-ray3.6091-37[»]
3KNIX-ray3.0091-37[»]
3KNKX-ray3.0091-37[»]
3KNMX-ray3.4591-37[»]
3KNOX-ray3.4591-37[»]
3V23X-ray3.0091-37[»]
3V25X-ray3.0091-37[»]
3V27X-ray3.1091-37[»]
3V29X-ray3.1091-37[»]
3V2DX-ray2.7091-37[»]
3V2FX-ray2.7091-37[»]
3V6WX-ray3.9091-37[»]
3V6XX-ray3.9091-37[»]
3ZN9X-ray3.1091-37[»]
3ZNEX-ray3.1091-37[»]
3ZVPX-ray3.8091-37[»]
4ABSX-ray3.1091-37[»]
4B8GX-ray3.7091-37[»]
4B8IX-ray3.7091-37[»]
4BTDX-ray2.9591-37[»]
4BYCX-ray3.3591-37[»]
4BYEX-ray3.3591-37[»]
4DHAX-ray3.2091-37[»]
4DHCX-ray3.2091-37[»]
4EJBX-ray3.5291-37[»]
4EJCX-ray3.5291-37[»]
4JUXX-ray2.8691-37[»]
4K0MX-ray3.3092-37[»]
4K0QX-ray3.3092-37[»]
4NVVX-ray3.0091-37[»]
4NVXX-ray3.0091-37[»]
4NVZX-ray3.1091-37[»]
4NW1X-ray3.1091-37[»]
4QCNX-ray2.6091-37[»]
4QCPX-ray2.6091-37[»]
4QCRX-ray2.5591-37[»]
4QCTX-ray2.5591-37[»]
4QCVX-ray2.9091-37[»]
4QCXX-ray2.9091-37[»]
4QCZX-ray2.8091-37[»]
4QD1X-ray2.8091-37[»]
4QJSX-ray2.9091-37[»]
4W2BX-ray3.60e1-37[»]
4W2DX-ray3.60e1-37[»]
ProteinModelPortaliQ5SHR2.
SMRiQ5SHR2. Positions 1-37.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHR2.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L36P family.Curated

Phylogenomic databases

eggNOGiCOG0257.
HOGENOMiHOG000111584.
KOiK02919.
OrthoDBiEOG676ZC2.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SHR2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30 
MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG
Length:37
Mass (Da):4,421
Last modified:December 21, 2004 - v1
Checksum:i439072E1737E2AE8
GO

Mass spectrometryi

Molecular mass is 4422 Da from positions 1 - 37. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024328 Genomic DNA. Translation: BAA75545.1.
AP008226 Genomic DNA. Translation: BAD71491.1.
RefSeqiYP_144934.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71491; BAD71491; BAD71491.
GeneIDi3167970.
KEGGittj:TTHA1668.
PATRICi23958291. VBITheThe93045_1638.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024328 Genomic DNA. Translation: BAA75545.1 .
AP008226 Genomic DNA. Translation: BAD71491.1 .
RefSeqi YP_144934.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VY1 X-ray 3.68 9 1-37 [» ]
1VY3 X-ray 3.68 9 1-37 [» ]
1YL3 X-ray 5.50 9 11-36 [» ]
2HGJ X-ray 5.00 8 1-37 [» ]
2HGQ X-ray 5.50 8 1-37 [» ]
2HGU X-ray 4.51 8 1-37 [» ]
2J01 X-ray 2.80 9 1-37 [» ]
2J03 X-ray 2.80 9 1-37 [» ]
2WDI X-ray 3.30 9 1-37 [» ]
2WDJ X-ray 3.30 9 1-37 [» ]
2WDL X-ray 3.50 9 1-37 [» ]
2WDN X-ray 3.50 9 1-37 [» ]
2WH2 X-ray 3.45 9 1-37 [» ]
2WH4 X-ray 3.45 9 1-37 [» ]
2WRJ X-ray 3.60 9 1-37 [» ]
2WRL X-ray 3.60 9 1-37 [» ]
2WRO X-ray 3.60 9 1-37 [» ]
2WRR X-ray 3.60 9 1-37 [» ]
2X9S X-ray 3.10 9 1-37 [» ]
2X9U X-ray 3.10 9 1-37 [» ]
2XG0 X-ray 3.20 9 1-37 [» ]
2XG2 X-ray 3.20 9 1-37 [» ]
2XQE X-ray 3.10 9 1-37 [» ]
2XTG electron microscopy 7.80 9 1-37 [» ]
2XUX electron microscopy 7.60 9 1-37 [» ]
2Y0V X-ray 3.10 9 1-37 [» ]
2Y0X X-ray 3.10 9 1-37 [» ]
2Y0Z X-ray 3.10 9 1-37 [» ]
2Y11 X-ray 3.10 9 1-37 [» ]
2Y13 X-ray 3.10 9 1-37 [» ]
2Y15 X-ray 3.10 9 1-37 [» ]
2Y17 X-ray 3.10 9 1-37 [» ]
2Y19 X-ray 3.10 9 1-37 [» ]
3FIN electron microscopy 6.40 9 2-36 [» ]
3HUX X-ray 3.10 9 1-37 [» ]
3HUZ X-ray 3.10 9 1-37 [» ]
3KIR X-ray 3.30 9 1-37 [» ]
3KIT X-ray 3.30 9 1-37 [» ]
3KIW X-ray 3.60 9 1-37 [» ]
3KIY X-ray 3.60 9 1-37 [» ]
3KNI X-ray 3.00 9 1-37 [» ]
3KNK X-ray 3.00 9 1-37 [» ]
3KNM X-ray 3.45 9 1-37 [» ]
3KNO X-ray 3.45 9 1-37 [» ]
3V23 X-ray 3.00 9 1-37 [» ]
3V25 X-ray 3.00 9 1-37 [» ]
3V27 X-ray 3.10 9 1-37 [» ]
3V29 X-ray 3.10 9 1-37 [» ]
3V2D X-ray 2.70 9 1-37 [» ]
3V2F X-ray 2.70 9 1-37 [» ]
3V6W X-ray 3.90 9 1-37 [» ]
3V6X X-ray 3.90 9 1-37 [» ]
3ZN9 X-ray 3.10 9 1-37 [» ]
3ZNE X-ray 3.10 9 1-37 [» ]
3ZVP X-ray 3.80 9 1-37 [» ]
4ABS X-ray 3.10 9 1-37 [» ]
4B8G X-ray 3.70 9 1-37 [» ]
4B8I X-ray 3.70 9 1-37 [» ]
4BTD X-ray 2.95 9 1-37 [» ]
4BYC X-ray 3.35 9 1-37 [» ]
4BYE X-ray 3.35 9 1-37 [» ]
4DHA X-ray 3.20 9 1-37 [» ]
4DHC X-ray 3.20 9 1-37 [» ]
4EJB X-ray 3.52 9 1-37 [» ]
4EJC X-ray 3.52 9 1-37 [» ]
4JUX X-ray 2.86 9 1-37 [» ]
4K0M X-ray 3.30 9 2-37 [» ]
4K0Q X-ray 3.30 9 2-37 [» ]
4NVV X-ray 3.00 9 1-37 [» ]
4NVX X-ray 3.00 9 1-37 [» ]
4NVZ X-ray 3.10 9 1-37 [» ]
4NW1 X-ray 3.10 9 1-37 [» ]
4QCN X-ray 2.60 9 1-37 [» ]
4QCP X-ray 2.60 9 1-37 [» ]
4QCR X-ray 2.55 9 1-37 [» ]
4QCT X-ray 2.55 9 1-37 [» ]
4QCV X-ray 2.90 9 1-37 [» ]
4QCX X-ray 2.90 9 1-37 [» ]
4QCZ X-ray 2.80 9 1-37 [» ]
4QD1 X-ray 2.80 9 1-37 [» ]
4QJS X-ray 2.90 9 1-37 [» ]
4W2B X-ray 3.60 e 1-37 [» ]
4W2D X-ray 3.60 e 1-37 [» ]
ProteinModelPortali Q5SHR2.
SMRi Q5SHR2. Positions 1-37.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1668.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71491 ; BAD71491 ; BAD71491 .
GeneIDi 3167970.
KEGGi ttj:TTHA1668.
PATRICi 23958291. VBITheThe93045_1638.

Phylogenomic databases

eggNOGi COG0257.
HOGENOMi HOG000111584.
KOi K02919.
OrthoDBi EOG676ZC2.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1707-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5SHR2.

Family and domain databases

HAMAPi MF_00251. Ribosomal_L36.
InterProi IPR000473. Ribosomal_L36.
[Graphical view ]
PANTHERi PTHR18804. PTHR18804. 1 hit.
Pfami PF00444. Ribosomal_L36. 1 hit.
[Graphical view ]
SUPFAMi SSF57840. SSF57840. 1 hit.
TIGRFAMsi TIGR01022. rpmJ_bact. 1 hit.
PROSITEi PS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
    Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
    Endocyt. Cell Res. 11:41-58(1995)
    Cited for: PROTEIN SEQUENCE.
  2. "Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein."
    Wada T., Yamazaki T., Kuramitsu S., Kyogoku Y.
    J. Biochem. 125:143-150(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  4. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-29.
  5. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.

Entry informationi

Entry nameiRL36_THET8
AccessioniPrimary (citable) accession number: Q5SHR2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: November 26, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3