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Protein

50S ribosomal protein L36

Gene

rpmJ

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+By similarityNote: Binds 1 zinc ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi11 – 111ZincBy similarity
Metal bindingi14 – 141ZincBy similarity
Metal bindingi27 – 271ZincBy similarity
Metal bindingi32 – 321ZincBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1707-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L36
Alternative name(s):
Ribosomal protein B
Gene namesi
Name:rpmJ
Ordered Locus Names:TTHA1668
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 373750S ribosomal protein L36PRO_0000126284Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1668.

Structurei

Secondary structure

1
37
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 64Combined sources
Beta strandi11 – 133Combined sources
Beta strandi16 – 194Combined sources
Beta strandi22 – 254Combined sources
Helixi30 – 323Combined sources
Beta strandi34 – 363Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VY4X-ray2.60B9/D91-37[»]
1VY5X-ray2.55B9/D91-37[»]
1VY6X-ray2.90B9/D91-37[»]
1VY7X-ray2.80B9/D91-37[»]
4P6FX-ray3.60R9/Y91-37[»]
4P70X-ray3.68R9/Y91-37[»]
4TUAX-ray3.60R9/Y91-37[»]
4TUBX-ray3.60R9/Y91-37[»]
4TUCX-ray3.60R9/Y91-37[»]
4TUDX-ray3.60R9/Y91-37[»]
4TUEX-ray3.50R9/Y91-37[»]
4V4PX-ray5.50911-36[»]
4V4XX-ray5.00B81-37[»]
4V4YX-ray5.50B81-37[»]
4V4ZX-ray4.51B81-37[»]
4V51X-ray2.8091-37[»]
4V5CX-ray3.30B9/D91-37[»]
4V5DX-ray3.50B9/D91-37[»]
4V5EX-ray3.45B9/D91-37[»]
4V5FX-ray3.60B9/D91-37[»]
4V5GX-ray3.60B9/D91-37[»]
4V5JX-ray3.10B9/D91-37[»]
4V5KX-ray3.20B9/D91-37[»]
4V5LX-ray3.10B91-37[»]
4V5Melectron microscopy7.80B91-37[»]
4V5Nelectron microscopy7.60B91-37[»]
4V5PX-ray3.10B9/D91-37[»]
4V5QX-ray3.10B9/D91-37[»]
4V5RX-ray3.10B9/D91-37[»]
4V5SX-ray3.10B9/D91-37[»]
4V68electron microscopy6.40B92-36[»]
4V6AX-ray3.10B9/D91-37[»]
4V7JX-ray3.30A9/B91-37[»]
4V7KX-ray3.60A9/B91-37[»]
4V7LX-ray3.00B9/D91-37[»]
4V7MX-ray3.45B9/D91-37[»]
4V8GX-ray3.00B9/D91-37[»]
4V8HX-ray3.10B9/D91-37[»]
4V8IX-ray2.70B9/D91-37[»]
4V8JX-ray3.90B9/D91-37[»]
4V8NX-ray3.10B9/D91-37[»]
4V8OX-ray3.80B91-37[»]
4V8QX-ray3.10A91-37[»]
4V8UX-ray3.70B9/D91-37[»]
4V8XX-ray3.35B9/D91-37[»]
4V90X-ray2.95B91-37[»]
4V95X-ray3.20B9/D91-37[»]
4V97X-ray3.52B9/D91-37[»]
4V9HX-ray2.86B91-37[»]
4V9IX-ray3.30B9/D92-37[»]
4V9RX-ray3.00B9/D91-37[»]
4V9SX-ray3.10B9/D91-37[»]
4W2EX-ray2.9091-37[»]
4W2FX-ray2.40B9/D91-37[»]
4W2GX-ray2.55B9/D91-37[»]
4W2HX-ray2.70B9/D91-37[»]
4W2IX-ray2.70B9/D91-37[»]
4W4GX-ray3.30R9/Y91-37[»]
4WPOX-ray2.80A9/C91-37[»]
4WQFX-ray2.80A9/C91-37[»]
4WQUX-ray2.80A9/C91-37[»]
4WQYX-ray2.80A9/C91-37[»]
4WT8X-ray3.40C0/D02-37[»]
4Y4OX-ray2.3019/291-37[»]
4Y4PX-ray2.5019/291-37[»]
4YPBX-ray3.40R9/Y91-37[»]
4YZVX-ray3.10R9/Y91-37[»]
4Z3SX-ray2.6519/291-37[»]
4Z8CX-ray2.9019/291-37[»]
4ZERX-ray3.1019/291-37[»]
5A9Zelectron microscopy4.70Af1-37[»]
5AA0electron microscopy5.00Af1-37[»]
5DOXX-ray3.1019/291-37[»]
5DOYX-ray2.6019/291-37[»]
5F8KX-ray2.8019/291-37[»]
5FDUX-ray2.9019/291-37[»]
5FDVX-ray2.8019/291-37[»]
5HAUX-ray3.0017/271-37[»]
5HCPX-ray2.8919/291-37[»]
5HCQX-ray2.8019/291-37[»]
5HCRX-ray2.8019/291-37[»]
5HD1X-ray2.7019/291-37[»]
5IMQelectron microscopy3.8011-37[»]
5IMRelectron microscopy-11-37[»]
5J4BX-ray2.6019/291-37[»]
5J4CX-ray2.8019/291-37[»]
5J8BX-ray2.6091-37[»]
ProteinModelPortaliQ5SHR2.
SMRiQ5SHR2. Positions 1-37.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHR2.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L36P family.Curated

Phylogenomic databases

eggNOGiENOG41067V7. Bacteria.
COG0257. LUCA.
HOGENOMiHOG000111584.
KOiK02919.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36. 1 hit.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SHR2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30 
MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG
Length:37
Mass (Da):4,421
Last modified:December 21, 2004 - v1
Checksum:i439072E1737E2AE8
GO

Mass spectrometryi

Molecular mass is 4422 Da from positions 1 - 37. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024328 Genomic DNA. Translation: BAA75545.1.
AP008226 Genomic DNA. Translation: BAD71491.1.
RefSeqiWP_008633370.1. NC_006461.1.
YP_144934.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71491; BAD71491; BAD71491.
GeneIDi3167970.
KEGGittj:TTHA1668.
PATRICi23958291. VBITheThe93045_1638.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024328 Genomic DNA. Translation: BAA75545.1.
AP008226 Genomic DNA. Translation: BAD71491.1.
RefSeqiWP_008633370.1. NC_006461.1.
YP_144934.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VY4X-ray2.60B9/D91-37[»]
1VY5X-ray2.55B9/D91-37[»]
1VY6X-ray2.90B9/D91-37[»]
1VY7X-ray2.80B9/D91-37[»]
4P6FX-ray3.60R9/Y91-37[»]
4P70X-ray3.68R9/Y91-37[»]
4TUAX-ray3.60R9/Y91-37[»]
4TUBX-ray3.60R9/Y91-37[»]
4TUCX-ray3.60R9/Y91-37[»]
4TUDX-ray3.60R9/Y91-37[»]
4TUEX-ray3.50R9/Y91-37[»]
4V4PX-ray5.50911-36[»]
4V4XX-ray5.00B81-37[»]
4V4YX-ray5.50B81-37[»]
4V4ZX-ray4.51B81-37[»]
4V51X-ray2.8091-37[»]
4V5CX-ray3.30B9/D91-37[»]
4V5DX-ray3.50B9/D91-37[»]
4V5EX-ray3.45B9/D91-37[»]
4V5FX-ray3.60B9/D91-37[»]
4V5GX-ray3.60B9/D91-37[»]
4V5JX-ray3.10B9/D91-37[»]
4V5KX-ray3.20B9/D91-37[»]
4V5LX-ray3.10B91-37[»]
4V5Melectron microscopy7.80B91-37[»]
4V5Nelectron microscopy7.60B91-37[»]
4V5PX-ray3.10B9/D91-37[»]
4V5QX-ray3.10B9/D91-37[»]
4V5RX-ray3.10B9/D91-37[»]
4V5SX-ray3.10B9/D91-37[»]
4V68electron microscopy6.40B92-36[»]
4V6AX-ray3.10B9/D91-37[»]
4V7JX-ray3.30A9/B91-37[»]
4V7KX-ray3.60A9/B91-37[»]
4V7LX-ray3.00B9/D91-37[»]
4V7MX-ray3.45B9/D91-37[»]
4V8GX-ray3.00B9/D91-37[»]
4V8HX-ray3.10B9/D91-37[»]
4V8IX-ray2.70B9/D91-37[»]
4V8JX-ray3.90B9/D91-37[»]
4V8NX-ray3.10B9/D91-37[»]
4V8OX-ray3.80B91-37[»]
4V8QX-ray3.10A91-37[»]
4V8UX-ray3.70B9/D91-37[»]
4V8XX-ray3.35B9/D91-37[»]
4V90X-ray2.95B91-37[»]
4V95X-ray3.20B9/D91-37[»]
4V97X-ray3.52B9/D91-37[»]
4V9HX-ray2.86B91-37[»]
4V9IX-ray3.30B9/D92-37[»]
4V9RX-ray3.00B9/D91-37[»]
4V9SX-ray3.10B9/D91-37[»]
4W2EX-ray2.9091-37[»]
4W2FX-ray2.40B9/D91-37[»]
4W2GX-ray2.55B9/D91-37[»]
4W2HX-ray2.70B9/D91-37[»]
4W2IX-ray2.70B9/D91-37[»]
4W4GX-ray3.30R9/Y91-37[»]
4WPOX-ray2.80A9/C91-37[»]
4WQFX-ray2.80A9/C91-37[»]
4WQUX-ray2.80A9/C91-37[»]
4WQYX-ray2.80A9/C91-37[»]
4WT8X-ray3.40C0/D02-37[»]
4Y4OX-ray2.3019/291-37[»]
4Y4PX-ray2.5019/291-37[»]
4YPBX-ray3.40R9/Y91-37[»]
4YZVX-ray3.10R9/Y91-37[»]
4Z3SX-ray2.6519/291-37[»]
4Z8CX-ray2.9019/291-37[»]
4ZERX-ray3.1019/291-37[»]
5A9Zelectron microscopy4.70Af1-37[»]
5AA0electron microscopy5.00Af1-37[»]
5DOXX-ray3.1019/291-37[»]
5DOYX-ray2.6019/291-37[»]
5F8KX-ray2.8019/291-37[»]
5FDUX-ray2.9019/291-37[»]
5FDVX-ray2.8019/291-37[»]
5HAUX-ray3.0017/271-37[»]
5HCPX-ray2.8919/291-37[»]
5HCQX-ray2.8019/291-37[»]
5HCRX-ray2.8019/291-37[»]
5HD1X-ray2.7019/291-37[»]
5IMQelectron microscopy3.8011-37[»]
5IMRelectron microscopy-11-37[»]
5J4BX-ray2.6019/291-37[»]
5J4CX-ray2.8019/291-37[»]
5J8BX-ray2.6091-37[»]
ProteinModelPortaliQ5SHR2.
SMRiQ5SHR2. Positions 1-37.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA1668.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD71491; BAD71491; BAD71491.
GeneIDi3167970.
KEGGittj:TTHA1668.
PATRICi23958291. VBITheThe93045_1638.

Phylogenomic databases

eggNOGiENOG41067V7. Bacteria.
COG0257. LUCA.
HOGENOMiHOG000111584.
KOiK02919.

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1707-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ5SHR2.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36. 1 hit.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL36_THET8
AccessioniPrimary (citable) accession number: Q5SHR2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: September 7, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.