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Q5SHQ7

- RL15_THET8

UniProt

Q5SHQ7 - RL15_THET8

Protein

50S ribosomal protein L15

Gene

rplO

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 83 (01 Oct 2014)
      Sequence version 1 (21 Dec 2004)
      Previous versions | rss
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    Functioni

    Binds to the 23S rRNA.By similarity

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-1712-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L15
    Gene namesi
    Name:rplO
    Ordered Locus Names:TTHA1673
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. large ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 15015050S ribosomal protein L15PRO_0000104846Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.

    Protein-protein interaction databases

    STRINGi300852.TTHA1673.

    Structurei

    Secondary structure

    1
    150
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi3 – 53
    Beta strandi7 – 93
    Beta strandi10 – 134
    Turni23 – 253
    Turni29 – 324
    Beta strandi35 – 373
    Turni38 – 403
    Beta strandi41 – 433
    Turni48 – 503
    Beta strandi53 – 553
    Turni58 – 614
    Beta strandi80 – 845
    Helixi85 – 884
    Beta strandi89 – 913
    Beta strandi93 – 953
    Helixi97 – 1015
    Turni102 – 1043
    Beta strandi108 – 1103
    Beta strandi111 – 1155
    Beta strandi116 – 1183
    Beta strandi122 – 1254
    Beta strandi128 – 1303
    Helixi132 – 1409
    Beta strandi144 – 1474

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1GIYX-ray5.50O1-150[»]
    1YL3X-ray5.50O1-150[»]
    2HGJX-ray5.00O1-150[»]
    2HGQX-ray5.50O1-150[»]
    2HGUX-ray4.51O1-150[»]
    2J01X-ray2.80P1-150[»]
    2J03X-ray2.80P1-150[»]
    2V47X-ray3.80P1-150[»]
    2V49X-ray3.80P1-150[»]
    2WDIX-ray3.30P1-150[»]
    2WDJX-ray3.30P1-150[»]
    2WDLX-ray3.50P1-150[»]
    2WDNX-ray3.50P1-150[»]
    2WH2X-ray3.45P1-150[»]
    2WH4X-ray3.45P1-150[»]
    2WRJX-ray3.60P1-150[»]
    2WRLX-ray3.60P1-150[»]
    2WROX-ray3.60P1-150[»]
    2WRRX-ray3.60P1-150[»]
    2X9SX-ray3.10P1-150[»]
    2X9UX-ray3.10P1-150[»]
    2XG0X-ray3.20P1-150[»]
    2XG2X-ray3.20P1-150[»]
    2XQEX-ray3.10P1-150[»]
    2XTGelectron microscopy7.80P1-150[»]
    2XUXelectron microscopy7.60P1-150[»]
    2Y0VX-ray3.10P1-150[»]
    2Y0XX-ray3.10P1-150[»]
    2Y0ZX-ray3.10P1-150[»]
    2Y11X-ray3.10P1-150[»]
    2Y13X-ray3.10P1-150[»]
    2Y15X-ray3.10P1-150[»]
    2Y17X-ray3.10P1-150[»]
    2Y19X-ray3.10P1-150[»]
    3FINelectron microscopy6.40P5-150[»]
    3HUXX-ray3.10P1-150[»]
    3HUZX-ray3.10P1-150[»]
    3I8FX-ray3.10O1-150[»]
    3I8IX-ray3.10O1-150[»]
    3I9CX-ray3.50O1-150[»]
    3I9EX-ray3.50O1-150[»]
    3KIRX-ray3.30P1-150[»]
    3KITX-ray3.30P1-150[»]
    3KIWX-ray3.60P1-150[»]
    3KIYX-ray3.60P1-150[»]
    3KNIX-ray3.00P1-150[»]
    3KNKX-ray3.00P1-150[»]
    3KNMX-ray3.45P1-150[»]
    3KNOX-ray3.45P1-150[»]
    3TVEX-ray3.10O1-150[»]
    3TVHX-ray3.10O1-150[»]
    3UXQX-ray3.20P1-150[»]
    3UXRX-ray3.20P1-150[»]
    3UYEX-ray3.00O1-150[»]
    3UYGX-ray3.00O1-150[»]
    3UZ1X-ray3.30O1-150[»]
    3UZ2X-ray3.30O1-150[»]
    3UZ8X-ray3.00O1-150[»]
    3UZ9X-ray3.00O1-150[»]
    3UZFX-ray3.30O1-150[»]
    3UZHX-ray3.30O1-150[»]
    3UZKX-ray3.30O1-150[»]
    3UZNX-ray3.30O1-150[»]
    3V23X-ray3.00P1-150[»]
    3V25X-ray3.00P1-150[»]
    3V27X-ray3.10P1-150[»]
    3V29X-ray3.10P1-150[»]
    3V2DX-ray2.70P1-150[»]
    3V2FX-ray2.70P1-150[»]
    3V6WX-ray3.90P1-150[»]
    3V6XX-ray3.90P1-150[»]
    3ZN9X-ray3.10P1-150[»]
    3ZNEX-ray3.10P1-150[»]
    3ZVPX-ray3.80P1-150[»]
    4ABSX-ray3.10P1-150[»]
    4B8GX-ray3.70P1-150[»]
    4B8IX-ray3.70P1-150[»]
    4BTDX-ray2.95P2-150[»]
    4BYCX-ray3.35P1-150[»]
    4BYEX-ray3.35P1-150[»]
    4DHAX-ray3.20P1-150[»]
    4DHCX-ray3.20P1-150[»]
    4EJBX-ray3.52P1-150[»]
    4EJCX-ray3.52P1-150[»]
    4G5LX-ray3.30O1-150[»]
    4G5NX-ray3.30O1-150[»]
    4G5UX-ray3.10O1-150[»]
    4G5WX-ray3.10O1-150[»]
    4JUXX-ray2.86P1-150[»]
    4K0MX-ray3.30P5-150[»]
    4K0QX-ray3.30P5-150[»]
    4NVVX-ray3.00P1-150[»]
    4NVXX-ray3.00P1-150[»]
    4NVZX-ray3.10P1-150[»]
    4NW1X-ray3.10P1-150[»]
    ProteinModelPortaliQ5SHQ7.
    SMRiQ5SHQ7. Positions 5-150.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ5SHQ7.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L15P family.Curated

    Phylogenomic databases

    eggNOGiCOG0200.
    HOGENOMiHOG000231262.
    KOiK02876.
    OMAiSTKIGFE.
    OrthoDBiEOG6CGCM5.
    PhylomeDBiQ5SHQ7.

    Family and domain databases

    HAMAPiMF_01341. Ribosomal_L15.
    InterProiIPR005749. Ribosomal_L15_bac-type.
    IPR001196. Ribosomal_L15_CS.
    IPR021131. Ribosomal_L18e/L15P.
    [Graphical view]
    PANTHERiPTHR12934. PTHR12934. 1 hit.
    PfamiPF00828. Ribosomal_L18e. 1 hit.
    [Graphical view]
    SUPFAMiSSF52080. SSF52080. 1 hit.
    TIGRFAMsiTIGR01071. rplO_bact. 1 hit.
    PROSITEiPS00475. RIBOSOMAL_L15. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5SHQ7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLSDLRPNP GANKRRKRVG RGPGSGHGKT ATRGHKGQKS RSGGLKDPRR    50
    FEGGRSTTLM RLPKRGMQGQ VPGEIKRPRY QGVNLKDLAR FEGEVTPELL 100
    VRAGLLKKGY RLKILGEGEA KPLKVVAHAF SKSALEKLKA AGGEPVLLEA 150
    Length:150
    Mass (Da):16,281
    Last modified:December 21, 2004 - v1
    Checksum:i0175AF33F530AD4F
    GO

    Mass spectrometryi

    Molecular mass is 16284 Da from positions 1 - 150. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD71496.1.
    RefSeqiWP_011173703.1. NC_006461.1.
    YP_144939.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD71496; BAD71496; BAD71496.
    GeneIDi3168730.
    KEGGittj:TTHA1673.
    PATRICi23958301. VBITheThe93045_1643.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD71496.1 .
    RefSeqi WP_011173703.1. NC_006461.1.
    YP_144939.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1GIY X-ray 5.50 O 1-150 [» ]
    1YL3 X-ray 5.50 O 1-150 [» ]
    2HGJ X-ray 5.00 O 1-150 [» ]
    2HGQ X-ray 5.50 O 1-150 [» ]
    2HGU X-ray 4.51 O 1-150 [» ]
    2J01 X-ray 2.80 P 1-150 [» ]
    2J03 X-ray 2.80 P 1-150 [» ]
    2V47 X-ray 3.80 P 1-150 [» ]
    2V49 X-ray 3.80 P 1-150 [» ]
    2WDI X-ray 3.30 P 1-150 [» ]
    2WDJ X-ray 3.30 P 1-150 [» ]
    2WDL X-ray 3.50 P 1-150 [» ]
    2WDN X-ray 3.50 P 1-150 [» ]
    2WH2 X-ray 3.45 P 1-150 [» ]
    2WH4 X-ray 3.45 P 1-150 [» ]
    2WRJ X-ray 3.60 P 1-150 [» ]
    2WRL X-ray 3.60 P 1-150 [» ]
    2WRO X-ray 3.60 P 1-150 [» ]
    2WRR X-ray 3.60 P 1-150 [» ]
    2X9S X-ray 3.10 P 1-150 [» ]
    2X9U X-ray 3.10 P 1-150 [» ]
    2XG0 X-ray 3.20 P 1-150 [» ]
    2XG2 X-ray 3.20 P 1-150 [» ]
    2XQE X-ray 3.10 P 1-150 [» ]
    2XTG electron microscopy 7.80 P 1-150 [» ]
    2XUX electron microscopy 7.60 P 1-150 [» ]
    2Y0V X-ray 3.10 P 1-150 [» ]
    2Y0X X-ray 3.10 P 1-150 [» ]
    2Y0Z X-ray 3.10 P 1-150 [» ]
    2Y11 X-ray 3.10 P 1-150 [» ]
    2Y13 X-ray 3.10 P 1-150 [» ]
    2Y15 X-ray 3.10 P 1-150 [» ]
    2Y17 X-ray 3.10 P 1-150 [» ]
    2Y19 X-ray 3.10 P 1-150 [» ]
    3FIN electron microscopy 6.40 P 5-150 [» ]
    3HUX X-ray 3.10 P 1-150 [» ]
    3HUZ X-ray 3.10 P 1-150 [» ]
    3I8F X-ray 3.10 O 1-150 [» ]
    3I8I X-ray 3.10 O 1-150 [» ]
    3I9C X-ray 3.50 O 1-150 [» ]
    3I9E X-ray 3.50 O 1-150 [» ]
    3KIR X-ray 3.30 P 1-150 [» ]
    3KIT X-ray 3.30 P 1-150 [» ]
    3KIW X-ray 3.60 P 1-150 [» ]
    3KIY X-ray 3.60 P 1-150 [» ]
    3KNI X-ray 3.00 P 1-150 [» ]
    3KNK X-ray 3.00 P 1-150 [» ]
    3KNM X-ray 3.45 P 1-150 [» ]
    3KNO X-ray 3.45 P 1-150 [» ]
    3TVE X-ray 3.10 O 1-150 [» ]
    3TVH X-ray 3.10 O 1-150 [» ]
    3UXQ X-ray 3.20 P 1-150 [» ]
    3UXR X-ray 3.20 P 1-150 [» ]
    3UYE X-ray 3.00 O 1-150 [» ]
    3UYG X-ray 3.00 O 1-150 [» ]
    3UZ1 X-ray 3.30 O 1-150 [» ]
    3UZ2 X-ray 3.30 O 1-150 [» ]
    3UZ8 X-ray 3.00 O 1-150 [» ]
    3UZ9 X-ray 3.00 O 1-150 [» ]
    3UZF X-ray 3.30 O 1-150 [» ]
    3UZH X-ray 3.30 O 1-150 [» ]
    3UZK X-ray 3.30 O 1-150 [» ]
    3UZN X-ray 3.30 O 1-150 [» ]
    3V23 X-ray 3.00 P 1-150 [» ]
    3V25 X-ray 3.00 P 1-150 [» ]
    3V27 X-ray 3.10 P 1-150 [» ]
    3V29 X-ray 3.10 P 1-150 [» ]
    3V2D X-ray 2.70 P 1-150 [» ]
    3V2F X-ray 2.70 P 1-150 [» ]
    3V6W X-ray 3.90 P 1-150 [» ]
    3V6X X-ray 3.90 P 1-150 [» ]
    3ZN9 X-ray 3.10 P 1-150 [» ]
    3ZNE X-ray 3.10 P 1-150 [» ]
    3ZVP X-ray 3.80 P 1-150 [» ]
    4ABS X-ray 3.10 P 1-150 [» ]
    4B8G X-ray 3.70 P 1-150 [» ]
    4B8I X-ray 3.70 P 1-150 [» ]
    4BTD X-ray 2.95 P 2-150 [» ]
    4BYC X-ray 3.35 P 1-150 [» ]
    4BYE X-ray 3.35 P 1-150 [» ]
    4DHA X-ray 3.20 P 1-150 [» ]
    4DHC X-ray 3.20 P 1-150 [» ]
    4EJB X-ray 3.52 P 1-150 [» ]
    4EJC X-ray 3.52 P 1-150 [» ]
    4G5L X-ray 3.30 O 1-150 [» ]
    4G5N X-ray 3.30 O 1-150 [» ]
    4G5U X-ray 3.10 O 1-150 [» ]
    4G5W X-ray 3.10 O 1-150 [» ]
    4JUX X-ray 2.86 P 1-150 [» ]
    4K0M X-ray 3.30 P 5-150 [» ]
    4K0Q X-ray 3.30 P 5-150 [» ]
    4NVV X-ray 3.00 P 1-150 [» ]
    4NVX X-ray 3.00 P 1-150 [» ]
    4NVZ X-ray 3.10 P 1-150 [» ]
    4NW1 X-ray 3.10 P 1-150 [» ]
    ProteinModelPortali Q5SHQ7.
    SMRi Q5SHQ7. Positions 5-150.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA1673.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD71496 ; BAD71496 ; BAD71496 .
    GeneIDi 3168730.
    KEGGi ttj:TTHA1673.
    PATRICi 23958301. VBITheThe93045_1643.

    Phylogenomic databases

    eggNOGi COG0200.
    HOGENOMi HOG000231262.
    KOi K02876.
    OMAi STKIGFE.
    OrthoDBi EOG6CGCM5.
    PhylomeDBi Q5SHQ7.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-1712-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q5SHQ7.

    Family and domain databases

    HAMAPi MF_01341. Ribosomal_L15.
    InterProi IPR005749. Ribosomal_L15_bac-type.
    IPR001196. Ribosomal_L15_CS.
    IPR021131. Ribosomal_L18e/L15P.
    [Graphical view ]
    PANTHERi PTHR12934. PTHR12934. 1 hit.
    Pfami PF00828. Ribosomal_L18e. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52080. SSF52080. 1 hit.
    TIGRFAMsi TIGR01071. rplO_bact. 1 hit.
    PROSITEi PS00475. RIBOSOMAL_L15. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
      Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
      Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 1-15.
    3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
    4. "The path of messenger RNA through the ribosome."
      Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
      Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
    5. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

    Entry informationi

    Entry nameiRL15_THET8
    AccessioniPrimary (citable) accession number: Q5SHQ7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 29, 2005
    Last sequence update: December 21, 2004
    Last modified: October 1, 2014
    This is version 83 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3