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Q5SHQ7 (RL15_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L15
Gene names
Name:rplO
Ordered Locus Names:TTHA1673
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length150 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Binds to the 23S rRNA By similarity.

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L15P family.

Mass spectrometry

Molecular mass is 16284 Da from positions 1 - 150. Determined by MALDI. Ref.3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 15015050S ribosomal protein L15 HAMAP-Rule MF_01341_B
PRO_0000104846

Secondary structure

1 ......................................... 150
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5SHQ7 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: 0175AF33F530AD4F

FASTA15016,281
        10         20         30         40         50         60 
MKLSDLRPNP GANKRRKRVG RGPGSGHGKT ATRGHKGQKS RSGGLKDPRR FEGGRSTTLM 

        70         80         90        100        110        120 
RLPKRGMQGQ VPGEIKRPRY QGVNLKDLAR FEGEVTPELL VRAGLLKKGY RLKILGEGEA 

       130        140        150 
KPLKVVAHAF SKSALEKLKA AGGEPVLLEA

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-15.
[3]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[4]"The path of messenger RNA through the ribosome."
Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[5]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008226 Genomic DNA. Translation: BAD71496.1.
RefSeqYP_144939.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50O1-150[»]
1YL3X-ray5.50O1-150[»]
2HGJX-ray5.00O1-150[»]
2HGQX-ray5.50O1-150[»]
2HGUX-ray4.51O1-150[»]
2J01X-ray2.80P1-150[»]
2J03X-ray2.80P1-150[»]
2V47X-ray3.80P1-150[»]
2V49X-ray3.80P1-150[»]
2WDIX-ray3.30P1-150[»]
2WDJX-ray3.30P1-150[»]
2WDLX-ray3.50P1-150[»]
2WDNX-ray3.50P1-150[»]
2WH2X-ray3.45P1-150[»]
2WH4X-ray3.45P1-150[»]
2WRJX-ray3.60P1-150[»]
2WRLX-ray3.60P1-150[»]
2WROX-ray3.60P1-150[»]
2WRRX-ray3.60P1-150[»]
2X9SX-ray3.10P1-150[»]
2X9UX-ray3.10P1-150[»]
2XG0X-ray3.20P1-150[»]
2XG2X-ray3.20P1-150[»]
2XQEX-ray3.10P1-150[»]
2XTGelectron microscopy7.80P1-150[»]
2XUXelectron microscopy7.60P1-150[»]
2Y0VX-ray3.10P1-150[»]
2Y0XX-ray3.10P1-150[»]
2Y0ZX-ray3.10P1-150[»]
2Y11X-ray3.10P1-150[»]
2Y13X-ray3.10P1-150[»]
2Y15X-ray3.10P1-150[»]
2Y17X-ray3.10P1-150[»]
2Y19X-ray3.10P1-150[»]
3FINelectron microscopy6.40P5-150[»]
3HUXX-ray3.10P1-150[»]
3HUZX-ray3.10P1-150[»]
3I8FX-ray3.10O1-150[»]
3I8IX-ray3.10O1-150[»]
3I9CX-ray3.50O1-150[»]
3I9EX-ray3.50O1-150[»]
3KIRX-ray3.30P1-150[»]
3KITX-ray3.30P1-150[»]
3KIWX-ray3.60P1-150[»]
3KIYX-ray3.60P1-150[»]
3KNIX-ray3.00P1-150[»]
3KNKX-ray3.00P1-150[»]
3KNMX-ray3.45P1-150[»]
3KNOX-ray3.45P1-150[»]
3TVEX-ray3.10O1-150[»]
3TVHX-ray3.10O1-150[»]
3UXQX-ray3.20P1-150[»]
3UXRX-ray3.20P1-150[»]
3UYEX-ray3.00O1-150[»]
3UYGX-ray3.00O1-150[»]
3UZ1X-ray3.30O1-150[»]
3UZ2X-ray3.30O1-150[»]
3UZ8X-ray3.00O1-150[»]
3UZ9X-ray3.00O1-150[»]
3UZFX-ray3.30O1-150[»]
3UZHX-ray3.30O1-150[»]
3UZKX-ray3.30O1-150[»]
3UZNX-ray3.30O1-150[»]
3V23X-ray3.00P1-150[»]
3V25X-ray3.00P1-150[»]
3V27X-ray3.10P1-150[»]
3V29X-ray3.10P1-150[»]
3V2DX-ray2.70P1-150[»]
3V2FX-ray2.70P1-150[»]
3ZVPX-ray3.80P1-150[»]
4ABSX-ray3.10P1-150[»]
4DHAX-ray3.20P1-150[»]
4DHCX-ray3.20P1-150[»]
4G5LX-ray3.30O1-150[»]
4G5NX-ray3.30O1-150[»]
4G5UX-ray3.10O1-150[»]
4G5WX-ray3.10O1-150[»]
ProteinModelPortalQ5SHQ7.
SMRQ5SHQ7. Positions 5-150.
ModBaseSearch...

Protein-protein interaction databases

STRING300852.TTHA1673.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD71496; BAD71496; BAD71496.
GeneID3168730.
KEGGttj:TTHA1673.
PATRIC23958301. VBITheThe93045_1643.

Phylogenomic databases

eggNOGCOG0200.
HOGENOMHOG000231262.
KOK02876.
OMACTKGHKG.
ProtClustDBPRK05592.

Family and domain databases

HAMAPMF_01341_B. Ribosomal_L15_B.
InterProIPR005749. Ribosomal_L15_bac-type.
IPR001196. Ribosomal_L15_CS.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view]
PANTHERPTHR12934. PTHR12934. 1 hit.
PfamPF00828. Ribosomal_L18e. 1 hit.
[Graphical view]
SUPFAMSSF52080. Ribosomal_L18e/L15. 1 hit.
TIGRFAMsTIGR01071. rplO_bact. 1 hit.
PROSITEPS00475. RIBOSOMAL_L15. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ5SHQ7.

Entry information

Entry nameRL15_THET8
AccessionPrimary (citable) accession number: Q5SHQ7
Entry history
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: May 1, 2013
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents