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Protein

50S ribosomal protein L15

Gene

rplO

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L15
Gene namesi
Name:rplO
Ordered Locus Names:TTHA1673
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001048461 – 15050S ribosomal protein L15Add BLAST150

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1673.

Structurei

Secondary structure

1150
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi25 – 29Combined sources5
Beta strandi37 – 40Combined sources4
Beta strandi53 – 55Combined sources3
Beta strandi81 – 84Combined sources4
Helixi85 – 88Combined sources4
Beta strandi93 – 95Combined sources3
Turni97 – 104Combined sources8
Beta strandi111 – 115Combined sources5
Beta strandi122 – 125Combined sources4
Beta strandi128 – 130Combined sources3
Helixi132 – 137Combined sources6
Beta strandi140 – 142Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RP/YP1-150[»]
1VY4X-ray2.60BP/DP1-150[»]
1VY5X-ray2.55BP/DP1-150[»]
1VY6X-ray2.90BP/DP1-150[»]
1VY7X-ray2.80BP/DP1-150[»]
4L47X-ray3.22RP/YP1-150[»]
4L71X-ray3.90RP/YP1-150[»]
4LELX-ray3.90RP/YP1-150[»]
4LFZX-ray3.92RP/YP1-150[»]
4LNTX-ray2.94RP/YP1-150[»]
4LSKX-ray3.48RP/YP1-150[»]
4LT8X-ray3.14RP/YP1-150[»]
4P6FX-ray3.60RP/YP1-150[»]
4P70X-ray3.68RP/YP1-150[»]
4TUAX-ray3.60RP/YP1-150[»]
4TUBX-ray3.60RP/YP1-150[»]
4TUCX-ray3.60RP/YP1-150[»]
4TUDX-ray3.60RP/YP1-150[»]
4TUEX-ray3.50RP/YP1-150[»]
4V42X-ray5.50BO1-150[»]
4V4PX-ray5.50O1-150[»]
4V4XX-ray5.00O1-150[»]
4V4YX-ray5.50O1-150[»]
4V4ZX-ray4.51O1-150[»]
4V51X-ray2.80BP/DP1-150[»]
4V5AX-ray3.50BP/DP1-150[»]
4V5CX-ray3.30BP/DP1-150[»]
4V5DX-ray3.50BP/DP1-150[»]
4V5EX-ray3.45BP/DP1-150[»]
4V5FX-ray3.60BP/DP1-150[»]
4V5GX-ray3.60BP/DP1-150[»]
4V5JX-ray3.10BP/DP1-150[»]
4V5KX-ray3.20BP/DP1-150[»]
4V5LX-ray3.10BP1-150[»]
4V5Melectron microscopy7.80BP1-150[»]
4V5Nelectron microscopy7.60BP1-150[»]
4V5PX-ray3.10BP/DP1-150[»]
4V5QX-ray3.10BP/DP1-150[»]
4V5RX-ray3.10BP/DP1-150[»]
4V5SX-ray3.10BP/DP1-150[»]
4V68electron microscopy6.40BP5-150[»]
4V6AX-ray3.10BP/DP1-150[»]
4V6FX-ray3.10AO/DO1-150[»]
4V6GX-ray3.50BO/DO1-150[»]
4V7JX-ray3.30AP/BP1-150[»]
4V7KX-ray3.60AP/BP1-150[»]
4V7LX-ray3.00BP/DP1-150[»]
4V7MX-ray3.45BP/DP1-150[»]
4V7WX-ray3.00BP/DP1-150[»]
4V7XX-ray3.00BP/DP1-150[»]
4V7YX-ray3.00BP/DP1-150[»]
4V7ZX-ray3.10BP/DP1-150[»]
4V87X-ray3.10AO/DO1-150[»]
4V8AX-ray3.20AP/BP1-150[»]
4V8BX-ray3.00BO/DO1-150[»]
4V8CX-ray3.30AO/BO1-150[»]
4V8DX-ray3.00BO/DO1-150[»]
4V8EX-ray3.30AO/CO1-150[»]
4V8FX-ray3.30AO/DO1-150[»]
4V8GX-ray3.00BP/DP1-150[»]
4V8HX-ray3.10BP/DP1-150[»]
4V8IX-ray2.70BP/DP1-150[»]
4V8JX-ray3.90BP/DP1-150[»]
4V8NX-ray3.10BP/DP1-150[»]
4V8OX-ray3.80BP1-150[»]
4V8QX-ray3.10AP1-150[»]
4V8UX-ray3.70BP/DP1-150[»]
4V8XX-ray3.35BP/DP1-150[»]
4V90X-ray2.95BP2-150[»]
4V95X-ray3.20BP/DP1-150[»]
4V97X-ray3.52BP/DP1-150[»]
4V9AX-ray3.30BO/DO1-150[»]
4V9BX-ray3.10BO/DO1-150[»]
4V9HX-ray2.86BP1-150[»]
4V9IX-ray3.30BP/DP5-150[»]
4V9RX-ray3.00BP/DP1-150[»]
4V9SX-ray3.10BP/DP1-150[»]
4W2EX-ray2.90P1-150[»]
4W2FX-ray2.40BP/DP1-150[»]
4W2GX-ray2.55BP/DP1-150[»]
4W2HX-ray2.70BP/DP1-150[»]
4W2IX-ray2.70BP/DP1-150[»]
4W4GX-ray3.30RP/YP1-150[»]
4WPOX-ray2.80AP/CP1-150[»]
4WQ1X-ray3.1035/781-150[»]
4WQFX-ray2.80AP/CP1-150[»]
4WQRX-ray3.1535/781-150[»]
4WQUX-ray2.80AP/CP1-150[»]
4WQYX-ray2.80AP/CP1-150[»]
4WR6X-ray3.0535/781-150[»]
4WRAX-ray3.0535/781-150[»]
4WROX-ray3.05781-150[»]
4WSDX-ray2.9535/781-150[»]
4WSMX-ray3.3035/781-150[»]
4WT1X-ray3.0535/781-150[»]
4WT8X-ray3.40CO/DO5-150[»]
4WU1X-ray3.2035/781-150[»]
4WZDX-ray3.1035/781-150[»]
4WZOX-ray3.3035/781-150[»]
4Y4OX-ray2.301P/2P1-150[»]
4Y4PX-ray2.501P/2P1-150[»]
4YPBX-ray3.40RP/YP1-150[»]
4YZVX-ray3.10RP/YP1-150[»]
4Z3SX-ray2.651P/2P1-150[»]
4Z8CX-ray2.901P/2P1-150[»]
4ZERX-ray3.101P/2P1-149[»]
4ZSNX-ray3.60RP/YP1-150[»]
5A9Zelectron microscopy4.70AM6-150[»]
5AA0electron microscopy5.00AM6-150[»]
5CZPX-ray3.30RP/YP1-150[»]
5D8BX-ray3.63FB/J1-150[»]
5DFEX-ray3.10RP/YP1-150[»]
5DOXX-ray3.101P/2P1-150[»]
5DOYX-ray2.601P/2P1-150[»]
5E7KX-ray3.2035/781-150[»]
5E81X-ray2.9535/781-150[»]
5EL4X-ray3.1535/781-150[»]
5EL5X-ray3.1535/781-150[»]
5EL6X-ray3.1035/781-150[»]
5EL7X-ray3.1535/781-150[»]
5F8KX-ray2.801P/2P1-149[»]
5FDUX-ray2.901P/2P1-149[»]
5FDVX-ray2.801P/2P1-149[»]
5HAUX-ray3.001N/2N1-150[»]
5HCPX-ray2.891P/2P1-150[»]
5HCQX-ray2.801P/2P1-150[»]
5HCRX-ray2.801P/2P1-150[»]
5HD1X-ray2.701P/2P1-150[»]
5IB7X-ray2.9935/781-150[»]
5IB8X-ray3.1335/781-150[»]
5IBBX-ray2.9635/781-150[»]
5IMQelectron microscopy3.80h1-150[»]
5IMRelectron microscopy-h1-150[»]
5J30X-ray3.20RP/YP1-150[»]
5J3CX-ray3.04RP/YP1-150[»]
5J4BX-ray2.601P/2P1-150[»]
5J4CX-ray2.801P/2P1-150[»]
5J8BX-ray2.60P1-150[»]
ProteinModelPortaliQ5SHQ7.
SMRiQ5SHQ7.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHQ7.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L15P family.Curated

Phylogenomic databases

eggNOGiENOG4108UZ0. Bacteria.
COG0200. LUCA.
HOGENOMiHOG000231262.
KOiK02876.
OMAiRYQVKAG.
PhylomeDBiQ5SHQ7.

Family and domain databases

HAMAPiMF_01341. Ribosomal_L15. 1 hit.
InterProiIPR030878. Ribosomal_L15.
IPR005749. Ribosomal_L15_bac-type.
IPR001196. Ribosomal_L15_CS.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view]
PANTHERiPTHR12934. PTHR12934. 1 hit.
PfamiPF00828. Ribosomal_L27A. 1 hit.
[Graphical view]
SUPFAMiSSF52080. SSF52080. 1 hit.
TIGRFAMsiTIGR01071. rplO_bact. 1 hit.
PROSITEiPS00475. RIBOSOMAL_L15. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SHQ7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLSDLRPNP GANKRRKRVG RGPGSGHGKT ATRGHKGQKS RSGGLKDPRR
60 70 80 90 100
FEGGRSTTLM RLPKRGMQGQ VPGEIKRPRY QGVNLKDLAR FEGEVTPELL
110 120 130 140 150
VRAGLLKKGY RLKILGEGEA KPLKVVAHAF SKSALEKLKA AGGEPVLLEA
Length:150
Mass (Da):16,281
Last modified:December 21, 2004 - v1
Checksum:i0175AF33F530AD4F
GO

Mass spectrometryi

Molecular mass is 16284 Da from positions 1 - 150. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71496.1.
RefSeqiWP_011173703.1. NC_006461.1.
YP_144939.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71496; BAD71496; BAD71496.
GeneIDi3168730.
KEGGittj:TTHA1673.
PATRICi23958301. VBITheThe93045_1643.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71496.1.
RefSeqiWP_011173703.1. NC_006461.1.
YP_144939.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RP/YP1-150[»]
1VY4X-ray2.60BP/DP1-150[»]
1VY5X-ray2.55BP/DP1-150[»]
1VY6X-ray2.90BP/DP1-150[»]
1VY7X-ray2.80BP/DP1-150[»]
4L47X-ray3.22RP/YP1-150[»]
4L71X-ray3.90RP/YP1-150[»]
4LELX-ray3.90RP/YP1-150[»]
4LFZX-ray3.92RP/YP1-150[»]
4LNTX-ray2.94RP/YP1-150[»]
4LSKX-ray3.48RP/YP1-150[»]
4LT8X-ray3.14RP/YP1-150[»]
4P6FX-ray3.60RP/YP1-150[»]
4P70X-ray3.68RP/YP1-150[»]
4TUAX-ray3.60RP/YP1-150[»]
4TUBX-ray3.60RP/YP1-150[»]
4TUCX-ray3.60RP/YP1-150[»]
4TUDX-ray3.60RP/YP1-150[»]
4TUEX-ray3.50RP/YP1-150[»]
4V42X-ray5.50BO1-150[»]
4V4PX-ray5.50O1-150[»]
4V4XX-ray5.00O1-150[»]
4V4YX-ray5.50O1-150[»]
4V4ZX-ray4.51O1-150[»]
4V51X-ray2.80BP/DP1-150[»]
4V5AX-ray3.50BP/DP1-150[»]
4V5CX-ray3.30BP/DP1-150[»]
4V5DX-ray3.50BP/DP1-150[»]
4V5EX-ray3.45BP/DP1-150[»]
4V5FX-ray3.60BP/DP1-150[»]
4V5GX-ray3.60BP/DP1-150[»]
4V5JX-ray3.10BP/DP1-150[»]
4V5KX-ray3.20BP/DP1-150[»]
4V5LX-ray3.10BP1-150[»]
4V5Melectron microscopy7.80BP1-150[»]
4V5Nelectron microscopy7.60BP1-150[»]
4V5PX-ray3.10BP/DP1-150[»]
4V5QX-ray3.10BP/DP1-150[»]
4V5RX-ray3.10BP/DP1-150[»]
4V5SX-ray3.10BP/DP1-150[»]
4V68electron microscopy6.40BP5-150[»]
4V6AX-ray3.10BP/DP1-150[»]
4V6FX-ray3.10AO/DO1-150[»]
4V6GX-ray3.50BO/DO1-150[»]
4V7JX-ray3.30AP/BP1-150[»]
4V7KX-ray3.60AP/BP1-150[»]
4V7LX-ray3.00BP/DP1-150[»]
4V7MX-ray3.45BP/DP1-150[»]
4V7WX-ray3.00BP/DP1-150[»]
4V7XX-ray3.00BP/DP1-150[»]
4V7YX-ray3.00BP/DP1-150[»]
4V7ZX-ray3.10BP/DP1-150[»]
4V87X-ray3.10AO/DO1-150[»]
4V8AX-ray3.20AP/BP1-150[»]
4V8BX-ray3.00BO/DO1-150[»]
4V8CX-ray3.30AO/BO1-150[»]
4V8DX-ray3.00BO/DO1-150[»]
4V8EX-ray3.30AO/CO1-150[»]
4V8FX-ray3.30AO/DO1-150[»]
4V8GX-ray3.00BP/DP1-150[»]
4V8HX-ray3.10BP/DP1-150[»]
4V8IX-ray2.70BP/DP1-150[»]
4V8JX-ray3.90BP/DP1-150[»]
4V8NX-ray3.10BP/DP1-150[»]
4V8OX-ray3.80BP1-150[»]
4V8QX-ray3.10AP1-150[»]
4V8UX-ray3.70BP/DP1-150[»]
4V8XX-ray3.35BP/DP1-150[»]
4V90X-ray2.95BP2-150[»]
4V95X-ray3.20BP/DP1-150[»]
4V97X-ray3.52BP/DP1-150[»]
4V9AX-ray3.30BO/DO1-150[»]
4V9BX-ray3.10BO/DO1-150[»]
4V9HX-ray2.86BP1-150[»]
4V9IX-ray3.30BP/DP5-150[»]
4V9RX-ray3.00BP/DP1-150[»]
4V9SX-ray3.10BP/DP1-150[»]
4W2EX-ray2.90P1-150[»]
4W2FX-ray2.40BP/DP1-150[»]
4W2GX-ray2.55BP/DP1-150[»]
4W2HX-ray2.70BP/DP1-150[»]
4W2IX-ray2.70BP/DP1-150[»]
4W4GX-ray3.30RP/YP1-150[»]
4WPOX-ray2.80AP/CP1-150[»]
4WQ1X-ray3.1035/781-150[»]
4WQFX-ray2.80AP/CP1-150[»]
4WQRX-ray3.1535/781-150[»]
4WQUX-ray2.80AP/CP1-150[»]
4WQYX-ray2.80AP/CP1-150[»]
4WR6X-ray3.0535/781-150[»]
4WRAX-ray3.0535/781-150[»]
4WROX-ray3.05781-150[»]
4WSDX-ray2.9535/781-150[»]
4WSMX-ray3.3035/781-150[»]
4WT1X-ray3.0535/781-150[»]
4WT8X-ray3.40CO/DO5-150[»]
4WU1X-ray3.2035/781-150[»]
4WZDX-ray3.1035/781-150[»]
4WZOX-ray3.3035/781-150[»]
4Y4OX-ray2.301P/2P1-150[»]
4Y4PX-ray2.501P/2P1-150[»]
4YPBX-ray3.40RP/YP1-150[»]
4YZVX-ray3.10RP/YP1-150[»]
4Z3SX-ray2.651P/2P1-150[»]
4Z8CX-ray2.901P/2P1-150[»]
4ZERX-ray3.101P/2P1-149[»]
4ZSNX-ray3.60RP/YP1-150[»]
5A9Zelectron microscopy4.70AM6-150[»]
5AA0electron microscopy5.00AM6-150[»]
5CZPX-ray3.30RP/YP1-150[»]
5D8BX-ray3.63FB/J1-150[»]
5DFEX-ray3.10RP/YP1-150[»]
5DOXX-ray3.101P/2P1-150[»]
5DOYX-ray2.601P/2P1-150[»]
5E7KX-ray3.2035/781-150[»]
5E81X-ray2.9535/781-150[»]
5EL4X-ray3.1535/781-150[»]
5EL5X-ray3.1535/781-150[»]
5EL6X-ray3.1035/781-150[»]
5EL7X-ray3.1535/781-150[»]
5F8KX-ray2.801P/2P1-149[»]
5FDUX-ray2.901P/2P1-149[»]
5FDVX-ray2.801P/2P1-149[»]
5HAUX-ray3.001N/2N1-150[»]
5HCPX-ray2.891P/2P1-150[»]
5HCQX-ray2.801P/2P1-150[»]
5HCRX-ray2.801P/2P1-150[»]
5HD1X-ray2.701P/2P1-150[»]
5IB7X-ray2.9935/781-150[»]
5IB8X-ray3.1335/781-150[»]
5IBBX-ray2.9635/781-150[»]
5IMQelectron microscopy3.80h1-150[»]
5IMRelectron microscopy-h1-150[»]
5J30X-ray3.20RP/YP1-150[»]
5J3CX-ray3.04RP/YP1-150[»]
5J4BX-ray2.601P/2P1-150[»]
5J4CX-ray2.801P/2P1-150[»]
5J8BX-ray2.60P1-150[»]
ProteinModelPortaliQ5SHQ7.
SMRiQ5SHQ7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA1673.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD71496; BAD71496; BAD71496.
GeneIDi3168730.
KEGGittj:TTHA1673.
PATRICi23958301. VBITheThe93045_1643.

Phylogenomic databases

eggNOGiENOG4108UZ0. Bacteria.
COG0200. LUCA.
HOGENOMiHOG000231262.
KOiK02876.
OMAiRYQVKAG.
PhylomeDBiQ5SHQ7.

Miscellaneous databases

EvolutionaryTraceiQ5SHQ7.

Family and domain databases

HAMAPiMF_01341. Ribosomal_L15. 1 hit.
InterProiIPR030878. Ribosomal_L15.
IPR005749. Ribosomal_L15_bac-type.
IPR001196. Ribosomal_L15_CS.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view]
PANTHERiPTHR12934. PTHR12934. 1 hit.
PfamiPF00828. Ribosomal_L27A. 1 hit.
[Graphical view]
SUPFAMiSSF52080. SSF52080. 1 hit.
TIGRFAMsiTIGR01071. rplO_bact. 1 hit.
PROSITEiPS00475. RIBOSOMAL_L15. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL15_THET8
AccessioniPrimary (citable) accession number: Q5SHQ7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: November 30, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.