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Q5SHQ7

- RL15_THET8

UniProt

Q5SHQ7 - RL15_THET8

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Protein
50S ribosomal protein L15
Gene
rplO, TTHA1673
Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA By similarity.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1712-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L15
Gene namesi
Name:rplO
Ordered Locus Names:TTHA1673
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. large ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 15015050S ribosomal protein L15UniRule annotation
PRO_0000104846Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1673.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 53
Beta strandi7 – 93
Beta strandi10 – 134
Turni23 – 253
Turni29 – 324
Beta strandi35 – 373
Turni38 – 403
Beta strandi41 – 433
Turni48 – 503
Beta strandi53 – 553
Turni58 – 614
Beta strandi80 – 845
Helixi85 – 884
Beta strandi89 – 913
Beta strandi93 – 953
Helixi97 – 1015
Turni102 – 1043
Beta strandi108 – 1103
Beta strandi111 – 1155
Beta strandi116 – 1183
Beta strandi122 – 1254
Beta strandi128 – 1303
Helixi132 – 1409
Beta strandi144 – 1474

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50O1-150[»]
1YL3X-ray5.50O1-150[»]
2HGJX-ray5.00O1-150[»]
2HGQX-ray5.50O1-150[»]
2HGUX-ray4.51O1-150[»]
2J01X-ray2.80P1-150[»]
2J03X-ray2.80P1-150[»]
2V47X-ray3.80P1-150[»]
2V49X-ray3.80P1-150[»]
2WDIX-ray3.30P1-150[»]
2WDJX-ray3.30P1-150[»]
2WDLX-ray3.50P1-150[»]
2WDNX-ray3.50P1-150[»]
2WH2X-ray3.45P1-150[»]
2WH4X-ray3.45P1-150[»]
2WRJX-ray3.60P1-150[»]
2WRLX-ray3.60P1-150[»]
2WROX-ray3.60P1-150[»]
2WRRX-ray3.60P1-150[»]
2X9SX-ray3.10P1-150[»]
2X9UX-ray3.10P1-150[»]
2XG0X-ray3.20P1-150[»]
2XG2X-ray3.20P1-150[»]
2XQEX-ray3.10P1-150[»]
2XTGelectron microscopy7.80P1-150[»]
2XUXelectron microscopy7.60P1-150[»]
2Y0VX-ray3.10P1-150[»]
2Y0XX-ray3.10P1-150[»]
2Y0ZX-ray3.10P1-150[»]
2Y11X-ray3.10P1-150[»]
2Y13X-ray3.10P1-150[»]
2Y15X-ray3.10P1-150[»]
2Y17X-ray3.10P1-150[»]
2Y19X-ray3.10P1-150[»]
3FINelectron microscopy6.40P5-150[»]
3HUXX-ray3.10P1-150[»]
3HUZX-ray3.10P1-150[»]
3I8FX-ray3.10O1-150[»]
3I8IX-ray3.10O1-150[»]
3I9CX-ray3.50O1-150[»]
3I9EX-ray3.50O1-150[»]
3KIRX-ray3.30P1-150[»]
3KITX-ray3.30P1-150[»]
3KIWX-ray3.60P1-150[»]
3KIYX-ray3.60P1-150[»]
3KNIX-ray3.00P1-150[»]
3KNKX-ray3.00P1-150[»]
3KNMX-ray3.45P1-150[»]
3KNOX-ray3.45P1-150[»]
3TVEX-ray3.10O1-150[»]
3TVHX-ray3.10O1-150[»]
3UXQX-ray3.20P1-150[»]
3UXRX-ray3.20P1-150[»]
3UYEX-ray3.00O1-150[»]
3UYGX-ray3.00O1-150[»]
3UZ1X-ray3.30O1-150[»]
3UZ2X-ray3.30O1-150[»]
3UZ8X-ray3.00O1-150[»]
3UZ9X-ray3.00O1-150[»]
3UZFX-ray3.30O1-150[»]
3UZHX-ray3.30O1-150[»]
3UZKX-ray3.30O1-150[»]
3UZNX-ray3.30O1-150[»]
3V23X-ray3.00P1-150[»]
3V25X-ray3.00P1-150[»]
3V27X-ray3.10P1-150[»]
3V29X-ray3.10P1-150[»]
3V2DX-ray2.70P1-150[»]
3V2FX-ray2.70P1-150[»]
3V6WX-ray3.90P1-150[»]
3V6XX-ray3.90P1-150[»]
3ZN9X-ray3.10P1-150[»]
3ZNEX-ray3.10P1-150[»]
3ZVPX-ray3.80P1-150[»]
4ABSX-ray3.10P1-150[»]
4B8GX-ray3.70P1-150[»]
4B8IX-ray3.70P1-150[»]
4BTDX-ray2.95P2-150[»]
4BYCX-ray3.35P1-150[»]
4BYEX-ray3.35P1-150[»]
4DHAX-ray3.20P1-150[»]
4DHCX-ray3.20P1-150[»]
4EJBX-ray3.52P1-150[»]
4EJCX-ray3.52P1-150[»]
4G5LX-ray3.30O1-150[»]
4G5NX-ray3.30O1-150[»]
4G5UX-ray3.10O1-150[»]
4G5WX-ray3.10O1-150[»]
4JUXX-ray2.86P1-150[»]
4K0MX-ray3.30P5-150[»]
4K0QX-ray3.30P5-150[»]
4NVVX-ray3.00P1-150[»]
4NVXX-ray3.00P1-150[»]
4NVZX-ray3.10P1-150[»]
4NW1X-ray3.10P1-150[»]
ProteinModelPortaliQ5SHQ7.
SMRiQ5SHQ7. Positions 5-150.

Miscellaneous databases

EvolutionaryTraceiQ5SHQ7.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0200.
HOGENOMiHOG000231262.
KOiK02876.
OMAiSTKIGFE.
OrthoDBiEOG6CGCM5.
PhylomeDBiQ5SHQ7.

Family and domain databases

HAMAPiMF_01341_B. Ribosomal_L15_B.
InterProiIPR005749. Ribosomal_L15_bac-type.
IPR001196. Ribosomal_L15_CS.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view]
PANTHERiPTHR12934. PTHR12934. 1 hit.
PfamiPF00828. Ribosomal_L18e. 1 hit.
[Graphical view]
SUPFAMiSSF52080. SSF52080. 1 hit.
TIGRFAMsiTIGR01071. rplO_bact. 1 hit.
PROSITEiPS00475. RIBOSOMAL_L15. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SHQ7-1 [UniParc]FASTAAdd to Basket

« Hide

MKLSDLRPNP GANKRRKRVG RGPGSGHGKT ATRGHKGQKS RSGGLKDPRR    50
FEGGRSTTLM RLPKRGMQGQ VPGEIKRPRY QGVNLKDLAR FEGEVTPELL 100
VRAGLLKKGY RLKILGEGEA KPLKVVAHAF SKSALEKLKA AGGEPVLLEA 150
Length:150
Mass (Da):16,281
Last modified:December 21, 2004 - v1
Checksum:i0175AF33F530AD4F
GO

Mass spectrometryi

Molecular mass is 16284 Da from positions 1 - 150. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71496.1.
RefSeqiWP_011173703.1. NC_006461.1.
YP_144939.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71496; BAD71496; BAD71496.
GeneIDi3168730.
KEGGittj:TTHA1673.
PATRICi23958301. VBITheThe93045_1643.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71496.1 .
RefSeqi WP_011173703.1. NC_006461.1.
YP_144939.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1GIY X-ray 5.50 O 1-150 [» ]
1YL3 X-ray 5.50 O 1-150 [» ]
2HGJ X-ray 5.00 O 1-150 [» ]
2HGQ X-ray 5.50 O 1-150 [» ]
2HGU X-ray 4.51 O 1-150 [» ]
2J01 X-ray 2.80 P 1-150 [» ]
2J03 X-ray 2.80 P 1-150 [» ]
2V47 X-ray 3.80 P 1-150 [» ]
2V49 X-ray 3.80 P 1-150 [» ]
2WDI X-ray 3.30 P 1-150 [» ]
2WDJ X-ray 3.30 P 1-150 [» ]
2WDL X-ray 3.50 P 1-150 [» ]
2WDN X-ray 3.50 P 1-150 [» ]
2WH2 X-ray 3.45 P 1-150 [» ]
2WH4 X-ray 3.45 P 1-150 [» ]
2WRJ X-ray 3.60 P 1-150 [» ]
2WRL X-ray 3.60 P 1-150 [» ]
2WRO X-ray 3.60 P 1-150 [» ]
2WRR X-ray 3.60 P 1-150 [» ]
2X9S X-ray 3.10 P 1-150 [» ]
2X9U X-ray 3.10 P 1-150 [» ]
2XG0 X-ray 3.20 P 1-150 [» ]
2XG2 X-ray 3.20 P 1-150 [» ]
2XQE X-ray 3.10 P 1-150 [» ]
2XTG electron microscopy 7.80 P 1-150 [» ]
2XUX electron microscopy 7.60 P 1-150 [» ]
2Y0V X-ray 3.10 P 1-150 [» ]
2Y0X X-ray 3.10 P 1-150 [» ]
2Y0Z X-ray 3.10 P 1-150 [» ]
2Y11 X-ray 3.10 P 1-150 [» ]
2Y13 X-ray 3.10 P 1-150 [» ]
2Y15 X-ray 3.10 P 1-150 [» ]
2Y17 X-ray 3.10 P 1-150 [» ]
2Y19 X-ray 3.10 P 1-150 [» ]
3FIN electron microscopy 6.40 P 5-150 [» ]
3HUX X-ray 3.10 P 1-150 [» ]
3HUZ X-ray 3.10 P 1-150 [» ]
3I8F X-ray 3.10 O 1-150 [» ]
3I8I X-ray 3.10 O 1-150 [» ]
3I9C X-ray 3.50 O 1-150 [» ]
3I9E X-ray 3.50 O 1-150 [» ]
3KIR X-ray 3.30 P 1-150 [» ]
3KIT X-ray 3.30 P 1-150 [» ]
3KIW X-ray 3.60 P 1-150 [» ]
3KIY X-ray 3.60 P 1-150 [» ]
3KNI X-ray 3.00 P 1-150 [» ]
3KNK X-ray 3.00 P 1-150 [» ]
3KNM X-ray 3.45 P 1-150 [» ]
3KNO X-ray 3.45 P 1-150 [» ]
3TVE X-ray 3.10 O 1-150 [» ]
3TVH X-ray 3.10 O 1-150 [» ]
3UXQ X-ray 3.20 P 1-150 [» ]
3UXR X-ray 3.20 P 1-150 [» ]
3UYE X-ray 3.00 O 1-150 [» ]
3UYG X-ray 3.00 O 1-150 [» ]
3UZ1 X-ray 3.30 O 1-150 [» ]
3UZ2 X-ray 3.30 O 1-150 [» ]
3UZ8 X-ray 3.00 O 1-150 [» ]
3UZ9 X-ray 3.00 O 1-150 [» ]
3UZF X-ray 3.30 O 1-150 [» ]
3UZH X-ray 3.30 O 1-150 [» ]
3UZK X-ray 3.30 O 1-150 [» ]
3UZN X-ray 3.30 O 1-150 [» ]
3V23 X-ray 3.00 P 1-150 [» ]
3V25 X-ray 3.00 P 1-150 [» ]
3V27 X-ray 3.10 P 1-150 [» ]
3V29 X-ray 3.10 P 1-150 [» ]
3V2D X-ray 2.70 P 1-150 [» ]
3V2F X-ray 2.70 P 1-150 [» ]
3V6W X-ray 3.90 P 1-150 [» ]
3V6X X-ray 3.90 P 1-150 [» ]
3ZN9 X-ray 3.10 P 1-150 [» ]
3ZNE X-ray 3.10 P 1-150 [» ]
3ZVP X-ray 3.80 P 1-150 [» ]
4ABS X-ray 3.10 P 1-150 [» ]
4B8G X-ray 3.70 P 1-150 [» ]
4B8I X-ray 3.70 P 1-150 [» ]
4BTD X-ray 2.95 P 2-150 [» ]
4BYC X-ray 3.35 P 1-150 [» ]
4BYE X-ray 3.35 P 1-150 [» ]
4DHA X-ray 3.20 P 1-150 [» ]
4DHC X-ray 3.20 P 1-150 [» ]
4EJB X-ray 3.52 P 1-150 [» ]
4EJC X-ray 3.52 P 1-150 [» ]
4G5L X-ray 3.30 O 1-150 [» ]
4G5N X-ray 3.30 O 1-150 [» ]
4G5U X-ray 3.10 O 1-150 [» ]
4G5W X-ray 3.10 O 1-150 [» ]
4JUX X-ray 2.86 P 1-150 [» ]
4K0M X-ray 3.30 P 5-150 [» ]
4K0Q X-ray 3.30 P 5-150 [» ]
4NVV X-ray 3.00 P 1-150 [» ]
4NVX X-ray 3.00 P 1-150 [» ]
4NVZ X-ray 3.10 P 1-150 [» ]
4NW1 X-ray 3.10 P 1-150 [» ]
ProteinModelPortali Q5SHQ7.
SMRi Q5SHQ7. Positions 5-150.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1673.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71496 ; BAD71496 ; BAD71496 .
GeneIDi 3168730.
KEGGi ttj:TTHA1673.
PATRICi 23958301. VBITheThe93045_1643.

Phylogenomic databases

eggNOGi COG0200.
HOGENOMi HOG000231262.
KOi K02876.
OMAi STKIGFE.
OrthoDBi EOG6CGCM5.
PhylomeDBi Q5SHQ7.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1712-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5SHQ7.

Family and domain databases

HAMAPi MF_01341_B. Ribosomal_L15_B.
InterProi IPR005749. Ribosomal_L15_bac-type.
IPR001196. Ribosomal_L15_CS.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view ]
PANTHERi PTHR12934. PTHR12934. 1 hit.
Pfami PF00828. Ribosomal_L18e. 1 hit.
[Graphical view ]
SUPFAMi SSF52080. SSF52080. 1 hit.
TIGRFAMsi TIGR01071. rplO_bact. 1 hit.
PROSITEi PS00475. RIBOSOMAL_L15. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-15.
  3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  4. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  5. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

Entry informationi

Entry nameiRL15_THET8
AccessioniPrimary (citable) accession number: Q5SHQ7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: September 3, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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