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Q5SHQ6 (RL30_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L30
Gene names
Name:rpmD
Ordered Locus Names:TTHA1674
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length60 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L30P family.

Mass spectrometry

Molecular mass is 6655 Da from positions 2 - 60. Determined by MALDI. Ref.4

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular_componentlarge ribosomal subunit

Inferred from electronic annotation. Source: InterPro

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Ref.2 Ref.3
Chain2 – 605950S ribosomal protein L30 HAMAP-Rule MF_01371
PRO_0000104616

Secondary structure

1 ............. 60
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5SHQ6 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: CDC6675F81A8D327

FASTA606,785
        10         20         30         40         50         60 
MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV AHLVRVEVVE

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-23.
[3]"The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
Endocyt. Cell Res. 11:41-58(1995)
Cited for: PROTEIN SEQUENCE OF 2-14.
[4]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[5]"The path of messenger RNA through the ribosome."
Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[6]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008226 Genomic DNA. Translation: BAD71497.1.
RefSeqYP_144940.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50X1-60[»]
1YL3X-ray5.50X1-60[»]
2B66X-ray5.9031-60[»]
2B9NX-ray6.7631-60[»]
2B9PX-ray6.4631-60[»]
2HGJX-ray5.0021-60[»]
2HGQX-ray5.5021-60[»]
2HGUX-ray4.5121-60[»]
2J01X-ray2.8031-60[»]
2J03X-ray2.8031-60[»]
2V47X-ray3.8032-59[»]
2V49X-ray3.8032-59[»]
2WDIX-ray3.3031-60[»]
2WDJX-ray3.3031-60[»]
2WDLX-ray3.5031-60[»]
2WDNX-ray3.5031-60[»]
2WH2X-ray3.4531-60[»]
2WH4X-ray3.4531-60[»]
2WRJX-ray3.6031-60[»]
2WRLX-ray3.6031-60[»]
2WROX-ray3.6031-60[»]
2WRRX-ray3.6031-60[»]
2X9SX-ray3.1031-60[»]
2X9UX-ray3.1031-60[»]
2XG0X-ray3.2031-60[»]
2XG2X-ray3.2031-60[»]
2XQEX-ray3.1031-60[»]
2XTGelectron microscopy7.8031-60[»]
2XUXelectron microscopy7.6031-60[»]
2Y0VX-ray3.1031-60[»]
2Y0XX-ray3.1031-60[»]
2Y0ZX-ray3.1031-60[»]
2Y11X-ray3.1031-60[»]
2Y13X-ray3.1031-60[»]
2Y15X-ray3.1031-60[»]
2Y17X-ray3.1031-60[»]
2Y19X-ray3.1031-60[»]
3FINelectron microscopy6.4031-60[»]
3HUXX-ray3.1031-60[»]
3HUZX-ray3.1031-60[»]
3I8FX-ray3.10X1-60[»]
3I8IX-ray3.10X1-60[»]
3I9CX-ray3.50X1-60[»]
3I9EX-ray3.50X1-60[»]
3KIRX-ray3.3031-60[»]
3KITX-ray3.3031-60[»]
3KIWX-ray3.6031-60[»]
3KIYX-ray3.6031-60[»]
3KNIX-ray3.0031-60[»]
3KNKX-ray3.0031-60[»]
3KNMX-ray3.4531-60[»]
3KNOX-ray3.4531-60[»]
3OH5X-ray3.0031-60[»]
3OH7X-ray3.0031-60[»]
3OHJX-ray3.0031-60[»]
3OHKX-ray3.0031-60[»]
3OHZX-ray3.0031-60[»]
3OI1X-ray3.0031-60[»]
3OI3X-ray3.1031-60[»]
3OI5X-ray3.1031-60[»]
3TVEX-ray3.10X2-60[»]
3TVHX-ray3.10X2-60[»]
3UXQX-ray3.2031-60[»]
3UXRX-ray3.2031-60[»]
3UYEX-ray3.00X1-60[»]
3UYGX-ray3.00X1-60[»]
3UZ1X-ray3.30X1-60[»]
3UZ2X-ray3.30X1-60[»]
3UZ8X-ray3.00X1-60[»]
3UZ9X-ray3.00X1-60[»]
3UZFX-ray3.30X1-60[»]
3UZHX-ray3.30X1-60[»]
3UZKX-ray3.30X1-60[»]
3UZNX-ray3.30X1-60[»]
3V23X-ray3.0031-60[»]
3V25X-ray3.0031-60[»]
3V27X-ray3.1031-60[»]
3V29X-ray3.1031-60[»]
3V2DX-ray2.7031-60[»]
3V2FX-ray2.7031-60[»]
3ZVPX-ray3.8031-60[»]
4ABSX-ray3.1031-60[»]
4DHAX-ray3.2031-60[»]
4DHCX-ray3.2031-60[»]
4G5LX-ray3.30X1-60[»]
4G5NX-ray3.30X1-60[»]
4G5UX-ray3.10X1-60[»]
4G5WX-ray3.10X1-60[»]
ProteinModelPortalQ5SHQ6.
SMRQ5SHQ6. Positions 1-60.
ModBaseSearch...

Protein-protein interaction databases

STRING300852.TTHA1674.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD71497; BAD71497; BAD71497.
GeneID3169818.
KEGGttj:TTHA1674.
PATRIC23958303. VBITheThe93045_1644.

Phylogenomic databases

eggNOGbactNOG46066.
HOGENOMHOG000039916.
KOK02907.
OMASDMLDTI.
ProtClustDBPRK05611.

Family and domain databases

Gene3D3.30.1390.20. 1 hit.
HAMAPMF_01371_B. Ribosomal_L30_B.
InterProIPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMSSF55129. Ribosomal_L30. 1 hit.
TIGRFAMsTIGR01308. rpmD_bact. 1 hit.
PROSITEPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ5SHQ6.

Entry information

Entry nameRL30_THET8
AccessionPrimary (citable) accession number: Q5SHQ6
Entry history
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: May 1, 2013
This is version 74 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents