Reviewed, UniProtKB/Swiss-Prot Q5SHQ6 (RL30_THET8)

Names and origin

Protein names

Recommended name:
    50S ribosomal protein L30

Gene names

Name:	rpmD
Ordered Locus Names:	TTHA1674

Organism

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Complete proteome] [HAMAP]

Taxonomic identifier

300852 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus

Protein attributes

Sequence length	60 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level.

General annotation (Comments)

Subunit structure	Part of the 50S ribosomal subunit. HAMAP MF_01371
Sequence similarities	Belongs to the ribosomal protein L30P family.
Mass spectrometry	Molecular mass is 6655 Da from positions 2 - 60. Determined by MALDI. Ref.3

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome Direct protein sequencing
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	large ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Initiator methionine

1

1

Removed Ref.2

Chain

2 – 60

59

50S ribosomal protein L30 HAMAP MF_01371

PRO_0000104616

Secondary structure

1

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60

Helix Strand Turn

Details...

Beta strand

3 – 8

6

Beta strand

13 – 15

3

Helix

17 – 26

10

Beta strand

30 – 32

3

Beta strand

34 – 39

6

Helix

41 – 50

10

Helix

51 – 53

3

Beta strand

54 – 59

6

Sequences

	Sequence		Length	Mass (Da)
	Q5SHQ6-1 [UniParc]. Last modified January 23, 2007. Version 3. Checksum: CDC6675F81A8D327	FASTA	60	6,785
	10 20 30 40 50 60 MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV AHLVRVEVVE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Thermus thermophilus HB8." Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S. Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus." Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T. Biol. Chem. 381:1079-1087(2000) [PubMed: 11154066] [Abstract] Cited for: PROTEIN SEQUENCE OF 2-23.
[3]	"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry." Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A. Proteomics 5:4818-4831(2005) [PubMed: 16287167] [Abstract] Cited for: MASS SPECTROMETRY.
[4]	"The path of messenger RNA through the ribosome." Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F. Cell 106:233-241(2001) [PubMed: 11511350] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[5]	"Crystal structure of the ribosome at 5.5 A resolution." Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F. Science 292:883-896(2001) [PubMed: 11283358] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBLGenBankDDBJ

AP008226 Genomic DNA. Translation: BAD71497.1.

RefSeq

YP_144940.1.

3D structure databases

PDBPDBe

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1GIY	X-ray	5.50	X	-	[»]
1ML5	electron microscopy	14.00	x	1-60	[»]
1YL3	X-ray	5.50	X	1-60	[»]
2B66	X-ray	5.90	3	1-60	[»]
2B9N	X-ray	6.76	3	1-60	[»]
2B9P	X-ray	6.46	3	1-60	[»]
2HGJ	X-ray	5.00	2	1-60	[»]
2HGQ	X-ray	5.50	2	1-60	[»]
2HGU	X-ray	4.51	2	-	[»]
2J01	X-ray	2.80	3	2-59	[»]
2J03	X-ray	2.80	3	2-59	[»]
2V47	X-ray	3.80	3	2-59	[»]
2V49	X-ray	3.80	3	2-59	[»]
2WDI	X-ray	3.30	3	1-60	[»]
2WDJ	X-ray	3.30	3	1-60	[»]
2WDL	X-ray	3.50	3	1-60	[»]
2WDN	X-ray	3.50	3	1-60	[»]
2WH2	X-ray	3.45	3	1-60	[»]
2WH4	X-ray	3.45	3	1-60	[»]
3FIN	electron microscopy	6.40	3	1-60	[»]

ModBase

Search...

Protein-protein interaction databases

STRING

Q5SHQ6.

Genome annotation databases

GeneID

3169818.

GenomeReviews

Gene locus TTHA1674 in contig AP008226_GR.

KEGG

ttj:TTHA1674.

Organism-specific databases

CMR

Search...

Phylogenomic databases

HOGENOM

Q5SHQ6.

OMA

KNTPEIV.

Enzyme and pathway databases

BioCyc

TTHE300852:TTHA1674-MON.

Family and domain databases

HAMAP

MF_01371.
[Tree]

InterPro

IPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR000517. Ribosomal_L30p/L7e_cons-reg.
[Graphical view]

Pfam

PF00327. Ribosomal_L30. 1 hit.
[Graphical view]

PIRSF

PIRSF002211. Ribosomal_L30_bac-type. 1 hit.

TIGRFAMs

TIGR01308. rpmD_bact. 1 hit.

PROSITE

PS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

RL30_THET8

Accession

Primary (citable) accession number: Q5SHQ6

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 29, 2005
Last sequence update:	January 23, 2007
Last modified:	November 3, 2009
This is version 42 of the entry and version 3 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)