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Q5SHQ6

- RL30_THET8

UniProt

Q5SHQ6 - RL30_THET8

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Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1713-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30UniRule annotation
Gene namesi
Name:rpmDUniRule annotation
Ordered Locus Names:TTHA1674
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. large ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed2 Publications
Chaini2 – 605950S ribosomal protein L30PRO_0000104616Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1674.

Structurei

Secondary structure

1
60
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 86
Helixi17 – 2610
Beta strandi30 – 323
Beta strandi34 – 385
Helixi41 – 499
Turni50 – 534
Beta strandi54 – 596

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50X1-60[»]
1VVMX-ray3.2231-60[»]
1VVOX-ray3.2231-60[»]
1VVQX-ray3.9031-60[»]
1VVSX-ray3.9031-60[»]
1VVUX-ray3.9031-60[»]
1VVWX-ray3.9031-60[»]
1VVYX-ray3.9231-60[»]
1VW0X-ray3.9231-60[»]
1VX9X-ray2.9431-60[»]
1VXJX-ray2.9431-60[»]
1VXLX-ray3.4831-60[»]
1VXNX-ray3.4831-60[»]
1VXQX-ray3.1431-60[»]
1VXTX-ray3.1431-60[»]
1VY1X-ray3.6831-60[»]
1VY3X-ray3.6831-60[»]
1YL3X-ray5.50X1-60[»]
2B66X-ray5.9031-60[»]
2B9NX-ray6.7631-60[»]
2B9PX-ray6.4631-60[»]
2HGJX-ray5.0021-60[»]
2HGQX-ray5.5021-60[»]
2HGUX-ray4.5121-60[»]
2J01X-ray2.8032-60[»]
2J03X-ray2.8032-60[»]
2V47X-ray3.5032-60[»]
2V49X-ray3.5032-60[»]
2WDIX-ray3.3031-60[»]
2WDJX-ray3.3031-60[»]
2WDLX-ray3.5031-60[»]
2WDNX-ray3.5031-60[»]
2WH2X-ray3.4531-60[»]
2WH4X-ray3.4531-60[»]
2WRJX-ray3.6031-60[»]
2WRLX-ray3.6031-60[»]
2WROX-ray3.6031-60[»]
2WRRX-ray3.6031-60[»]
2X9SX-ray3.1031-60[»]
2X9UX-ray3.1031-60[»]
2XG0X-ray3.2031-60[»]
2XG2X-ray3.2031-60[»]
2XQEX-ray3.1031-60[»]
2XTGelectron microscopy7.8031-60[»]
2XUXelectron microscopy7.6031-60[»]
2Y0VX-ray3.1031-60[»]
2Y0XX-ray3.1031-60[»]
2Y0ZX-ray3.1031-60[»]
2Y11X-ray3.1031-60[»]
2Y13X-ray3.1031-60[»]
2Y15X-ray3.1031-60[»]
2Y17X-ray3.1031-60[»]
2Y19X-ray3.1031-60[»]
3FINelectron microscopy6.4031-60[»]
3HUXX-ray3.1031-60[»]
3HUZX-ray3.1031-60[»]
3I8FX-ray3.10X1-60[»]
3I8IX-ray3.10X1-60[»]
3I9CX-ray3.50X1-60[»]
3I9EX-ray3.50X1-60[»]
3KIRX-ray3.3031-60[»]
3KITX-ray3.3031-60[»]
3KIWX-ray3.6031-60[»]
3KIYX-ray3.6031-60[»]
3KNIX-ray3.0031-60[»]
3KNKX-ray3.0031-60[»]
3KNMX-ray3.4531-60[»]
3KNOX-ray3.4531-60[»]
3OH5X-ray3.0031-60[»]
3OH7X-ray3.0031-60[»]
3OHJX-ray3.0031-60[»]
3OHKX-ray3.0031-60[»]
3OHZX-ray3.0031-60[»]
3OI1X-ray3.0031-60[»]
3OI3X-ray3.1031-60[»]
3OI5X-ray3.1031-60[»]
3TVEX-ray3.10X2-60[»]
3TVHX-ray3.10X2-60[»]
3UXQX-ray3.2031-60[»]
3UXRX-ray3.2031-60[»]
3UYEX-ray3.00X1-60[»]
3UYGX-ray3.00X1-60[»]
3UZ1X-ray3.30X1-60[»]
3UZ2X-ray3.30X1-60[»]
3UZ8X-ray3.00X1-60[»]
3UZ9X-ray3.00X1-60[»]
3UZFX-ray3.30X1-60[»]
3UZHX-ray3.30X1-60[»]
3UZKX-ray3.30X1-60[»]
3UZNX-ray3.30X1-60[»]
3V23X-ray3.0031-60[»]
3V25X-ray3.0031-60[»]
3V27X-ray3.1031-60[»]
3V29X-ray3.1031-60[»]
3V2DX-ray2.7031-60[»]
3V2FX-ray2.7031-60[»]
3V6WX-ray3.9031-60[»]
3V6XX-ray3.9031-60[»]
3ZN9X-ray3.1031-60[»]
3ZNEX-ray3.1031-60[»]
3ZVPX-ray3.8031-60[»]
4ABSX-ray3.1031-60[»]
4B8GX-ray3.7031-60[»]
4B8IX-ray3.7031-60[»]
4BTDX-ray2.9531-60[»]
4BYCX-ray3.3531-60[»]
4BYEX-ray3.3531-60[»]
4DHAX-ray3.2031-60[»]
4DHCX-ray3.2031-60[»]
4EJBX-ray3.5231-60[»]
4EJCX-ray3.5231-60[»]
4G5LX-ray3.30X1-60[»]
4G5NX-ray3.30X1-60[»]
4G5UX-ray3.10X1-60[»]
4G5WX-ray3.10X1-60[»]
4JUXX-ray2.8631-60[»]
4K0MX-ray3.3031-59[»]
4K0QX-ray3.3031-59[»]
4KX0X-ray3.4431-60[»]
4KX2X-ray3.4431-60[»]
4NVVX-ray3.0031-60[»]
4NVXX-ray3.0031-60[»]
4NVZX-ray3.1031-60[»]
4NW1X-ray3.1031-60[»]
4QCNX-ray2.6031-60[»]
4QCPX-ray2.6031-60[»]
4QCRX-ray2.5531-60[»]
4QCTX-ray2.5531-60[»]
4QCVX-ray2.9031-60[»]
4QCXX-ray2.9031-60[»]
4QCZX-ray2.8031-60[»]
4QD1X-ray2.8031-60[»]
ProteinModelPortaliQ5SHQ6.
SMRiQ5SHQ6. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHQ6.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L30P family.UniRule annotation

Phylogenomic databases

eggNOGibactNOG46066.
HOGENOMiHOG000039916.
KOiK02907.
OMAiSDMLDTI.
OrthoDBiEOG6BGP7P.

Family and domain databases

Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SHQ6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV
60
AHLVRVEVVE
Length:60
Mass (Da):6,785
Last modified:January 23, 2007 - v3
Checksum:iCDC6675F81A8D327
GO

Mass spectrometryi

Molecular mass is 6655 Da from positions 2 - 60. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71497.1.
RefSeqiYP_144940.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71497; BAD71497; BAD71497.
GeneIDi3169818.
KEGGittj:TTHA1674.
PATRICi23958303. VBITheThe93045_1644.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71497.1 .
RefSeqi YP_144940.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1GIY X-ray 5.50 X 1-60 [» ]
1VVM X-ray 3.22 3 1-60 [» ]
1VVO X-ray 3.22 3 1-60 [» ]
1VVQ X-ray 3.90 3 1-60 [» ]
1VVS X-ray 3.90 3 1-60 [» ]
1VVU X-ray 3.90 3 1-60 [» ]
1VVW X-ray 3.90 3 1-60 [» ]
1VVY X-ray 3.92 3 1-60 [» ]
1VW0 X-ray 3.92 3 1-60 [» ]
1VX9 X-ray 2.94 3 1-60 [» ]
1VXJ X-ray 2.94 3 1-60 [» ]
1VXL X-ray 3.48 3 1-60 [» ]
1VXN X-ray 3.48 3 1-60 [» ]
1VXQ X-ray 3.14 3 1-60 [» ]
1VXT X-ray 3.14 3 1-60 [» ]
1VY1 X-ray 3.68 3 1-60 [» ]
1VY3 X-ray 3.68 3 1-60 [» ]
1YL3 X-ray 5.50 X 1-60 [» ]
2B66 X-ray 5.90 3 1-60 [» ]
2B9N X-ray 6.76 3 1-60 [» ]
2B9P X-ray 6.46 3 1-60 [» ]
2HGJ X-ray 5.00 2 1-60 [» ]
2HGQ X-ray 5.50 2 1-60 [» ]
2HGU X-ray 4.51 2 1-60 [» ]
2J01 X-ray 2.80 3 2-60 [» ]
2J03 X-ray 2.80 3 2-60 [» ]
2V47 X-ray 3.50 3 2-60 [» ]
2V49 X-ray 3.50 3 2-60 [» ]
2WDI X-ray 3.30 3 1-60 [» ]
2WDJ X-ray 3.30 3 1-60 [» ]
2WDL X-ray 3.50 3 1-60 [» ]
2WDN X-ray 3.50 3 1-60 [» ]
2WH2 X-ray 3.45 3 1-60 [» ]
2WH4 X-ray 3.45 3 1-60 [» ]
2WRJ X-ray 3.60 3 1-60 [» ]
2WRL X-ray 3.60 3 1-60 [» ]
2WRO X-ray 3.60 3 1-60 [» ]
2WRR X-ray 3.60 3 1-60 [» ]
2X9S X-ray 3.10 3 1-60 [» ]
2X9U X-ray 3.10 3 1-60 [» ]
2XG0 X-ray 3.20 3 1-60 [» ]
2XG2 X-ray 3.20 3 1-60 [» ]
2XQE X-ray 3.10 3 1-60 [» ]
2XTG electron microscopy 7.80 3 1-60 [» ]
2XUX electron microscopy 7.60 3 1-60 [» ]
2Y0V X-ray 3.10 3 1-60 [» ]
2Y0X X-ray 3.10 3 1-60 [» ]
2Y0Z X-ray 3.10 3 1-60 [» ]
2Y11 X-ray 3.10 3 1-60 [» ]
2Y13 X-ray 3.10 3 1-60 [» ]
2Y15 X-ray 3.10 3 1-60 [» ]
2Y17 X-ray 3.10 3 1-60 [» ]
2Y19 X-ray 3.10 3 1-60 [» ]
3FIN electron microscopy 6.40 3 1-60 [» ]
3HUX X-ray 3.10 3 1-60 [» ]
3HUZ X-ray 3.10 3 1-60 [» ]
3I8F X-ray 3.10 X 1-60 [» ]
3I8I X-ray 3.10 X 1-60 [» ]
3I9C X-ray 3.50 X 1-60 [» ]
3I9E X-ray 3.50 X 1-60 [» ]
3KIR X-ray 3.30 3 1-60 [» ]
3KIT X-ray 3.30 3 1-60 [» ]
3KIW X-ray 3.60 3 1-60 [» ]
3KIY X-ray 3.60 3 1-60 [» ]
3KNI X-ray 3.00 3 1-60 [» ]
3KNK X-ray 3.00 3 1-60 [» ]
3KNM X-ray 3.45 3 1-60 [» ]
3KNO X-ray 3.45 3 1-60 [» ]
3OH5 X-ray 3.00 3 1-60 [» ]
3OH7 X-ray 3.00 3 1-60 [» ]
3OHJ X-ray 3.00 3 1-60 [» ]
3OHK X-ray 3.00 3 1-60 [» ]
3OHZ X-ray 3.00 3 1-60 [» ]
3OI1 X-ray 3.00 3 1-60 [» ]
3OI3 X-ray 3.10 3 1-60 [» ]
3OI5 X-ray 3.10 3 1-60 [» ]
3TVE X-ray 3.10 X 2-60 [» ]
3TVH X-ray 3.10 X 2-60 [» ]
3UXQ X-ray 3.20 3 1-60 [» ]
3UXR X-ray 3.20 3 1-60 [» ]
3UYE X-ray 3.00 X 1-60 [» ]
3UYG X-ray 3.00 X 1-60 [» ]
3UZ1 X-ray 3.30 X 1-60 [» ]
3UZ2 X-ray 3.30 X 1-60 [» ]
3UZ8 X-ray 3.00 X 1-60 [» ]
3UZ9 X-ray 3.00 X 1-60 [» ]
3UZF X-ray 3.30 X 1-60 [» ]
3UZH X-ray 3.30 X 1-60 [» ]
3UZK X-ray 3.30 X 1-60 [» ]
3UZN X-ray 3.30 X 1-60 [» ]
3V23 X-ray 3.00 3 1-60 [» ]
3V25 X-ray 3.00 3 1-60 [» ]
3V27 X-ray 3.10 3 1-60 [» ]
3V29 X-ray 3.10 3 1-60 [» ]
3V2D X-ray 2.70 3 1-60 [» ]
3V2F X-ray 2.70 3 1-60 [» ]
3V6W X-ray 3.90 3 1-60 [» ]
3V6X X-ray 3.90 3 1-60 [» ]
3ZN9 X-ray 3.10 3 1-60 [» ]
3ZNE X-ray 3.10 3 1-60 [» ]
3ZVP X-ray 3.80 3 1-60 [» ]
4ABS X-ray 3.10 3 1-60 [» ]
4B8G X-ray 3.70 3 1-60 [» ]
4B8I X-ray 3.70 3 1-60 [» ]
4BTD X-ray 2.95 3 1-60 [» ]
4BYC X-ray 3.35 3 1-60 [» ]
4BYE X-ray 3.35 3 1-60 [» ]
4DHA X-ray 3.20 3 1-60 [» ]
4DHC X-ray 3.20 3 1-60 [» ]
4EJB X-ray 3.52 3 1-60 [» ]
4EJC X-ray 3.52 3 1-60 [» ]
4G5L X-ray 3.30 X 1-60 [» ]
4G5N X-ray 3.30 X 1-60 [» ]
4G5U X-ray 3.10 X 1-60 [» ]
4G5W X-ray 3.10 X 1-60 [» ]
4JUX X-ray 2.86 3 1-60 [» ]
4K0M X-ray 3.30 3 1-59 [» ]
4K0Q X-ray 3.30 3 1-59 [» ]
4KX0 X-ray 3.44 3 1-60 [» ]
4KX2 X-ray 3.44 3 1-60 [» ]
4NVV X-ray 3.00 3 1-60 [» ]
4NVX X-ray 3.00 3 1-60 [» ]
4NVZ X-ray 3.10 3 1-60 [» ]
4NW1 X-ray 3.10 3 1-60 [» ]
4QCN X-ray 2.60 3 1-60 [» ]
4QCP X-ray 2.60 3 1-60 [» ]
4QCR X-ray 2.55 3 1-60 [» ]
4QCT X-ray 2.55 3 1-60 [» ]
4QCV X-ray 2.90 3 1-60 [» ]
4QCX X-ray 2.90 3 1-60 [» ]
4QCZ X-ray 2.80 3 1-60 [» ]
4QD1 X-ray 2.80 3 1-60 [» ]
ProteinModelPortali Q5SHQ6.
SMRi Q5SHQ6. Positions 1-60.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1674.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71497 ; BAD71497 ; BAD71497 .
GeneIDi 3169818.
KEGGi ttj:TTHA1674.
PATRICi 23958303. VBITheThe93045_1644.

Phylogenomic databases

eggNOGi bactNOG46066.
HOGENOMi HOG000039916.
KOi K02907.
OMAi SDMLDTI.
OrthoDBi EOG6BGP7P.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1713-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5SHQ6.

Family and domain databases

Gene3Di 3.30.1390.20. 1 hit.
HAMAPi MF_01371_B. Ribosomal_L30_B.
InterProi IPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view ]
Pfami PF00327. Ribosomal_L30. 1 hit.
[Graphical view ]
PIRSFi PIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMi SSF55129. SSF55129. 1 hit.
TIGRFAMsi TIGR01308. rpmD_bact. 1 hit.
PROSITEi PS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-23.
  3. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
    Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
    Endocyt. Cell Res. 11:41-58(1995)
    Cited for: PROTEIN SEQUENCE OF 2-14.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  5. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  6. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

Entry informationi

Entry nameiRL30_THET8
AccessioniPrimary (citable) accession number: Q5SHQ6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 85 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3