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Q5SHQ6

- RL30_THET8

UniProt

Q5SHQ6 - RL30_THET8

Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-1713-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L30UniRule annotation
    Gene namesi
    Name:rpmDUniRule annotation
    Ordered Locus Names:TTHA1674
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. large ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed2 Publications
    Chaini2 – 605950S ribosomal protein L30PRO_0000104616Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.

    Protein-protein interaction databases

    STRINGi300852.TTHA1674.

    Structurei

    Secondary structure

    1
    60
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi3 – 86
    Helixi17 – 2610
    Beta strandi30 – 323
    Beta strandi34 – 385
    Helixi41 – 499
    Turni50 – 534
    Beta strandi54 – 596

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1GIYX-ray5.50X1-60[»]
    1YL3X-ray5.50X1-60[»]
    2B66X-ray5.9031-60[»]
    2B9NX-ray6.7631-60[»]
    2B9PX-ray6.4631-60[»]
    2HGJX-ray5.0021-60[»]
    2HGQX-ray5.5021-60[»]
    2HGUX-ray4.5121-60[»]
    2J01X-ray2.8032-60[»]
    2J03X-ray2.8032-60[»]
    2V47X-ray3.5032-60[»]
    2V49X-ray3.5032-60[»]
    2WDIX-ray3.3031-60[»]
    2WDJX-ray3.3031-60[»]
    2WDLX-ray3.5031-60[»]
    2WDNX-ray3.5031-60[»]
    2WH2X-ray3.4531-60[»]
    2WH4X-ray3.4531-60[»]
    2WRJX-ray3.6031-60[»]
    2WRLX-ray3.6031-60[»]
    2WROX-ray3.6031-60[»]
    2WRRX-ray3.6031-60[»]
    2X9SX-ray3.1031-60[»]
    2X9UX-ray3.1031-60[»]
    2XG0X-ray3.2031-60[»]
    2XG2X-ray3.2031-60[»]
    2XQEX-ray3.1031-60[»]
    2XTGelectron microscopy7.8031-60[»]
    2XUXelectron microscopy7.6031-60[»]
    2Y0VX-ray3.1031-60[»]
    2Y0XX-ray3.1031-60[»]
    2Y0ZX-ray3.1031-60[»]
    2Y11X-ray3.1031-60[»]
    2Y13X-ray3.1031-60[»]
    2Y15X-ray3.1031-60[»]
    2Y17X-ray3.1031-60[»]
    2Y19X-ray3.1031-60[»]
    3FINelectron microscopy6.4031-60[»]
    3HUXX-ray3.1031-60[»]
    3HUZX-ray3.1031-60[»]
    3I8FX-ray3.10X1-60[»]
    3I8IX-ray3.10X1-60[»]
    3I9CX-ray3.50X1-60[»]
    3I9EX-ray3.50X1-60[»]
    3KIRX-ray3.3031-60[»]
    3KITX-ray3.3031-60[»]
    3KIWX-ray3.6031-60[»]
    3KIYX-ray3.6031-60[»]
    3KNIX-ray3.0031-60[»]
    3KNKX-ray3.0031-60[»]
    3KNMX-ray3.4531-60[»]
    3KNOX-ray3.4531-60[»]
    3OH5X-ray3.0031-60[»]
    3OH7X-ray3.0031-60[»]
    3OHJX-ray3.0031-60[»]
    3OHKX-ray3.0031-60[»]
    3OHZX-ray3.0031-60[»]
    3OI1X-ray3.0031-60[»]
    3OI3X-ray3.1031-60[»]
    3OI5X-ray3.1031-60[»]
    3TVEX-ray3.10X2-60[»]
    3TVHX-ray3.10X2-60[»]
    3UXQX-ray3.2031-60[»]
    3UXRX-ray3.2031-60[»]
    3UYEX-ray3.00X1-60[»]
    3UYGX-ray3.00X1-60[»]
    3UZ1X-ray3.30X1-60[»]
    3UZ2X-ray3.30X1-60[»]
    3UZ8X-ray3.00X1-60[»]
    3UZ9X-ray3.00X1-60[»]
    3UZFX-ray3.30X1-60[»]
    3UZHX-ray3.30X1-60[»]
    3UZKX-ray3.30X1-60[»]
    3UZNX-ray3.30X1-60[»]
    3V23X-ray3.0031-60[»]
    3V25X-ray3.0031-60[»]
    3V27X-ray3.1031-60[»]
    3V29X-ray3.1031-60[»]
    3V2DX-ray2.7031-60[»]
    3V2FX-ray2.7031-60[»]
    3V6WX-ray3.9031-60[»]
    3V6XX-ray3.9031-60[»]
    3ZN9X-ray3.1031-60[»]
    3ZNEX-ray3.1031-60[»]
    3ZVPX-ray3.8031-60[»]
    4ABSX-ray3.1031-60[»]
    4B8GX-ray3.7031-60[»]
    4B8IX-ray3.7031-60[»]
    4BTDX-ray2.9531-60[»]
    4BYCX-ray3.3531-60[»]
    4BYEX-ray3.3531-60[»]
    4DHAX-ray3.2031-60[»]
    4DHCX-ray3.2031-60[»]
    4EJBX-ray3.5231-60[»]
    4EJCX-ray3.5231-60[»]
    4G5LX-ray3.30X1-60[»]
    4G5NX-ray3.30X1-60[»]
    4G5UX-ray3.10X1-60[»]
    4G5WX-ray3.10X1-60[»]
    4JUXX-ray2.8631-60[»]
    4K0MX-ray3.3031-59[»]
    4K0QX-ray3.3031-59[»]
    4NVVX-ray3.0031-60[»]
    4NVXX-ray3.0031-60[»]
    4NVZX-ray3.1031-60[»]
    4NW1X-ray3.1031-60[»]
    ProteinModelPortaliQ5SHQ6.
    SMRiQ5SHQ6. Positions 1-60.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ5SHQ6.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L30P family.UniRule annotation

    Phylogenomic databases

    eggNOGibactNOG46066.
    HOGENOMiHOG000039916.
    KOiK02907.
    OMAiSDMLDTI.
    OrthoDBiEOG6BGP7P.

    Family and domain databases

    Gene3Di3.30.1390.20. 1 hit.
    HAMAPiMF_01371_B. Ribosomal_L30_B.
    InterProiIPR005996. Ribosomal_L30_bac-type.
    IPR018038. Ribosomal_L30_CS.
    IPR016082. Ribosomal_L30_ferredoxin-like.
    [Graphical view]
    PfamiPF00327. Ribosomal_L30. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
    SUPFAMiSSF55129. SSF55129. 1 hit.
    TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
    PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q5SHQ6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV   50
    AHLVRVEVVE 60
    Length:60
    Mass (Da):6,785
    Last modified:January 23, 2007 - v3
    Checksum:iCDC6675F81A8D327
    GO

    Mass spectrometryi

    Molecular mass is 6655 Da from positions 2 - 60. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD71497.1.
    RefSeqiYP_144940.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD71497; BAD71497; BAD71497.
    GeneIDi3169818.
    KEGGittj:TTHA1674.
    PATRICi23958303. VBITheThe93045_1644.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD71497.1 .
    RefSeqi YP_144940.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1GIY X-ray 5.50 X 1-60 [» ]
    1YL3 X-ray 5.50 X 1-60 [» ]
    2B66 X-ray 5.90 3 1-60 [» ]
    2B9N X-ray 6.76 3 1-60 [» ]
    2B9P X-ray 6.46 3 1-60 [» ]
    2HGJ X-ray 5.00 2 1-60 [» ]
    2HGQ X-ray 5.50 2 1-60 [» ]
    2HGU X-ray 4.51 2 1-60 [» ]
    2J01 X-ray 2.80 3 2-60 [» ]
    2J03 X-ray 2.80 3 2-60 [» ]
    2V47 X-ray 3.50 3 2-60 [» ]
    2V49 X-ray 3.50 3 2-60 [» ]
    2WDI X-ray 3.30 3 1-60 [» ]
    2WDJ X-ray 3.30 3 1-60 [» ]
    2WDL X-ray 3.50 3 1-60 [» ]
    2WDN X-ray 3.50 3 1-60 [» ]
    2WH2 X-ray 3.45 3 1-60 [» ]
    2WH4 X-ray 3.45 3 1-60 [» ]
    2WRJ X-ray 3.60 3 1-60 [» ]
    2WRL X-ray 3.60 3 1-60 [» ]
    2WRO X-ray 3.60 3 1-60 [» ]
    2WRR X-ray 3.60 3 1-60 [» ]
    2X9S X-ray 3.10 3 1-60 [» ]
    2X9U X-ray 3.10 3 1-60 [» ]
    2XG0 X-ray 3.20 3 1-60 [» ]
    2XG2 X-ray 3.20 3 1-60 [» ]
    2XQE X-ray 3.10 3 1-60 [» ]
    2XTG electron microscopy 7.80 3 1-60 [» ]
    2XUX electron microscopy 7.60 3 1-60 [» ]
    2Y0V X-ray 3.10 3 1-60 [» ]
    2Y0X X-ray 3.10 3 1-60 [» ]
    2Y0Z X-ray 3.10 3 1-60 [» ]
    2Y11 X-ray 3.10 3 1-60 [» ]
    2Y13 X-ray 3.10 3 1-60 [» ]
    2Y15 X-ray 3.10 3 1-60 [» ]
    2Y17 X-ray 3.10 3 1-60 [» ]
    2Y19 X-ray 3.10 3 1-60 [» ]
    3FIN electron microscopy 6.40 3 1-60 [» ]
    3HUX X-ray 3.10 3 1-60 [» ]
    3HUZ X-ray 3.10 3 1-60 [» ]
    3I8F X-ray 3.10 X 1-60 [» ]
    3I8I X-ray 3.10 X 1-60 [» ]
    3I9C X-ray 3.50 X 1-60 [» ]
    3I9E X-ray 3.50 X 1-60 [» ]
    3KIR X-ray 3.30 3 1-60 [» ]
    3KIT X-ray 3.30 3 1-60 [» ]
    3KIW X-ray 3.60 3 1-60 [» ]
    3KIY X-ray 3.60 3 1-60 [» ]
    3KNI X-ray 3.00 3 1-60 [» ]
    3KNK X-ray 3.00 3 1-60 [» ]
    3KNM X-ray 3.45 3 1-60 [» ]
    3KNO X-ray 3.45 3 1-60 [» ]
    3OH5 X-ray 3.00 3 1-60 [» ]
    3OH7 X-ray 3.00 3 1-60 [» ]
    3OHJ X-ray 3.00 3 1-60 [» ]
    3OHK X-ray 3.00 3 1-60 [» ]
    3OHZ X-ray 3.00 3 1-60 [» ]
    3OI1 X-ray 3.00 3 1-60 [» ]
    3OI3 X-ray 3.10 3 1-60 [» ]
    3OI5 X-ray 3.10 3 1-60 [» ]
    3TVE X-ray 3.10 X 2-60 [» ]
    3TVH X-ray 3.10 X 2-60 [» ]
    3UXQ X-ray 3.20 3 1-60 [» ]
    3UXR X-ray 3.20 3 1-60 [» ]
    3UYE X-ray 3.00 X 1-60 [» ]
    3UYG X-ray 3.00 X 1-60 [» ]
    3UZ1 X-ray 3.30 X 1-60 [» ]
    3UZ2 X-ray 3.30 X 1-60 [» ]
    3UZ8 X-ray 3.00 X 1-60 [» ]
    3UZ9 X-ray 3.00 X 1-60 [» ]
    3UZF X-ray 3.30 X 1-60 [» ]
    3UZH X-ray 3.30 X 1-60 [» ]
    3UZK X-ray 3.30 X 1-60 [» ]
    3UZN X-ray 3.30 X 1-60 [» ]
    3V23 X-ray 3.00 3 1-60 [» ]
    3V25 X-ray 3.00 3 1-60 [» ]
    3V27 X-ray 3.10 3 1-60 [» ]
    3V29 X-ray 3.10 3 1-60 [» ]
    3V2D X-ray 2.70 3 1-60 [» ]
    3V2F X-ray 2.70 3 1-60 [» ]
    3V6W X-ray 3.90 3 1-60 [» ]
    3V6X X-ray 3.90 3 1-60 [» ]
    3ZN9 X-ray 3.10 3 1-60 [» ]
    3ZNE X-ray 3.10 3 1-60 [» ]
    3ZVP X-ray 3.80 3 1-60 [» ]
    4ABS X-ray 3.10 3 1-60 [» ]
    4B8G X-ray 3.70 3 1-60 [» ]
    4B8I X-ray 3.70 3 1-60 [» ]
    4BTD X-ray 2.95 3 1-60 [» ]
    4BYC X-ray 3.35 3 1-60 [» ]
    4BYE X-ray 3.35 3 1-60 [» ]
    4DHA X-ray 3.20 3 1-60 [» ]
    4DHC X-ray 3.20 3 1-60 [» ]
    4EJB X-ray 3.52 3 1-60 [» ]
    4EJC X-ray 3.52 3 1-60 [» ]
    4G5L X-ray 3.30 X 1-60 [» ]
    4G5N X-ray 3.30 X 1-60 [» ]
    4G5U X-ray 3.10 X 1-60 [» ]
    4G5W X-ray 3.10 X 1-60 [» ]
    4JUX X-ray 2.86 3 1-60 [» ]
    4K0M X-ray 3.30 3 1-59 [» ]
    4K0Q X-ray 3.30 3 1-59 [» ]
    4NVV X-ray 3.00 3 1-60 [» ]
    4NVX X-ray 3.00 3 1-60 [» ]
    4NVZ X-ray 3.10 3 1-60 [» ]
    4NW1 X-ray 3.10 3 1-60 [» ]
    ProteinModelPortali Q5SHQ6.
    SMRi Q5SHQ6. Positions 1-60.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA1674.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD71497 ; BAD71497 ; BAD71497 .
    GeneIDi 3169818.
    KEGGi ttj:TTHA1674.
    PATRICi 23958303. VBITheThe93045_1644.

    Phylogenomic databases

    eggNOGi bactNOG46066.
    HOGENOMi HOG000039916.
    KOi K02907.
    OMAi SDMLDTI.
    OrthoDBi EOG6BGP7P.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-1713-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q5SHQ6.

    Family and domain databases

    Gene3Di 3.30.1390.20. 1 hit.
    HAMAPi MF_01371_B. Ribosomal_L30_B.
    InterProi IPR005996. Ribosomal_L30_bac-type.
    IPR018038. Ribosomal_L30_CS.
    IPR016082. Ribosomal_L30_ferredoxin-like.
    [Graphical view ]
    Pfami PF00327. Ribosomal_L30. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002211. Ribosomal_L30_bac-type. 1 hit.
    SUPFAMi SSF55129. SSF55129. 1 hit.
    TIGRFAMsi TIGR01308. rpmD_bact. 1 hit.
    PROSITEi PS00634. RIBOSOMAL_L30. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
      Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
      Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-23.
    3. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
      Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
      Endocyt. Cell Res. 11:41-58(1995)
      Cited for: PROTEIN SEQUENCE OF 2-14.
    4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
    5. "The path of messenger RNA through the ribosome."
      Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
      Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
    6. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

    Entry informationi

    Entry nameiRL30_THET8
    AccessioniPrimary (citable) accession number: Q5SHQ6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 29, 2005
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 84 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3