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Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30UniRule annotation
Gene namesi
Name:rpmDUniRule annotation
Ordered Locus Names:TTHA1674
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00001046162 – 6050S ribosomal protein L30Add BLAST59

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1674.

Structurei

Secondary structure

160
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 8Combined sources5
Helixi17 – 26Combined sources10
Beta strandi34 – 37Combined sources4
Helixi41 – 49Combined sources9
Helixi51 – 53Combined sources3
Beta strandi54 – 58Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R3/Y31-60[»]
1VY4X-ray2.60B3/D31-60[»]
1VY5X-ray2.55B3/D31-60[»]
1VY6X-ray2.90B3/D31-60[»]
1VY7X-ray2.80B3/D31-60[»]
4L47X-ray3.22R3/Y31-60[»]
4L71X-ray3.90R3/Y31-60[»]
4LELX-ray3.90R3/Y31-60[»]
4LFZX-ray3.92R3/Y31-60[»]
4LNTX-ray2.94R3/Y31-60[»]
4LSKX-ray3.48R3/Y31-60[»]
4LT8X-ray3.14R3/Y31-60[»]
4P6FX-ray3.60R3/Y31-60[»]
4P70X-ray3.68R3/Y31-60[»]
4TUAX-ray3.60R3/Y31-60[»]
4TUBX-ray3.60R3/Y31-60[»]
4TUCX-ray3.60R3/Y31-60[»]
4TUDX-ray3.60R3/Y31-60[»]
4TUEX-ray3.50R3/Y31-60[»]
4V42X-ray5.50BX1-60[»]
4V4PX-ray5.50AX1-60[»]
4V4RX-ray5.9031-60[»]
4V4SX-ray6.7631-60[»]
4V4TX-ray6.4631-60[»]
4V4XX-ray5.00B21-60[»]
4V4YX-ray5.50B21-60[»]
4V4ZX-ray4.51B21-60[»]
4V51X-ray2.80B3/D32-60[»]
4V5AX-ray3.50B3/D32-60[»]
4V5CX-ray3.30B3/D31-60[»]
4V5DX-ray3.50B3/D31-60[»]
4V5EX-ray3.45B3/D31-60[»]
4V5FX-ray3.60B3/D31-60[»]
4V5GX-ray3.60B3/D31-60[»]
4V5JX-ray3.10B3/D31-60[»]
4V5KX-ray3.20B3/D31-60[»]
4V5LX-ray3.10B31-60[»]
4V5Melectron microscopy7.80B31-60[»]
4V5Nelectron microscopy7.60B31-60[»]
4V5PX-ray3.10B3/D31-60[»]
4V5QX-ray3.10B3/D31-60[»]
4V5RX-ray3.10B3/D31-60[»]
4V5SX-ray3.10B3/D31-60[»]
4V68electron microscopy6.40B31-60[»]
4V6AX-ray3.10B3/D31-60[»]
4V6FX-ray3.10AX/DX1-60[»]
4V6GX-ray3.50BX/DX1-60[»]
4V7JX-ray3.30A3/B31-60[»]
4V7KX-ray3.60A3/B31-60[»]
4V7LX-ray3.00B3/D31-60[»]
4V7MX-ray3.45B3/D31-60[»]
4V7WX-ray3.00B3/D31-60[»]
4V7XX-ray3.00B3/D31-60[»]
4V7YX-ray3.00B3/D31-60[»]
4V7ZX-ray3.10B3/D31-60[»]
4V87X-ray3.10AX/DX2-60[»]
4V8AX-ray3.20A3/B31-60[»]
4V8BX-ray3.00BX/DX1-60[»]
4V8CX-ray3.30AX/BX1-60[»]
4V8DX-ray3.00BX/DX1-60[»]
4V8EX-ray3.30AX/CX1-60[»]
4V8FX-ray3.30AX/DX1-60[»]
4V8GX-ray3.00B3/D31-60[»]
4V8HX-ray3.10B3/D31-60[»]
4V8IX-ray2.70B3/D31-60[»]
4V8JX-ray3.90B3/D31-60[»]
4V8NX-ray3.10B3/D31-60[»]
4V8OX-ray3.80B31-60[»]
4V8QX-ray3.10A31-60[»]
4V8UX-ray3.70B3/D31-60[»]
4V8XX-ray3.35B3/D31-60[»]
4V90X-ray2.95B31-60[»]
4V95X-ray3.20B3/D31-60[»]
4V97X-ray3.52B3/D31-60[»]
4V9AX-ray3.30BX/DX1-60[»]
4V9BX-ray3.10BX/DX1-60[»]
4V9HX-ray2.86B31-60[»]
4V9IX-ray3.30B3/D31-59[»]
4V9RX-ray3.00B3/D31-60[»]
4V9SX-ray3.10B3/D31-60[»]
4W2EX-ray2.9031-60[»]
4W2FX-ray2.40B3/D31-60[»]
4W2GX-ray2.55B3/D31-60[»]
4W2HX-ray2.70B3/D31-60[»]
4W2IX-ray2.70B3/D31-60[»]
4W4GX-ray3.30R3/Y31-60[»]
4WPOX-ray2.80A3/C31-60[»]
4WQ1X-ray3.10H5/L82-60[»]
4WQFX-ray2.80A3/C31-60[»]
4WQRX-ray3.15H5/L81-60[»]
4WQUX-ray2.80A3/C31-60[»]
4WQYX-ray2.80A3/C31-60[»]
4WR6X-ray3.05H5/L81-60[»]
4WRAX-ray3.05H5/L81-60[»]
4WROX-ray3.05L81-60[»]
4WSDX-ray2.95H5/L81-60[»]
4WSMX-ray3.30H5/L81-60[»]
4WT1X-ray3.05H5/L81-60[»]
4WT8X-ray3.40CL/DL1-59[»]
4WU1X-ray3.20H5/L81-60[»]
4WZDX-ray3.10H5/L81-60[»]
4WZOX-ray3.30H5/L81-60[»]
4Y4OX-ray2.3013/231-60[»]
4Y4PX-ray2.5013/231-60[»]
4YPBX-ray3.40R3/Y31-60[»]
4YZVX-ray3.10R3/Y31-60[»]
4Z3SX-ray2.6513/231-60[»]
4Z8CX-ray2.9013/231-60[»]
4ZERX-ray3.1013/232-60[»]
4ZSNX-ray3.60R3/Y31-60[»]
5A9Zelectron microscopy4.70AZ2-60[»]
5AA0electron microscopy5.00AZ2-60[»]
5CZPX-ray3.30R3/Y31-60[»]
5D8BX-ray3.63TB/X1-60[»]
5DFEX-ray3.10R3/Y31-60[»]
5DOXX-ray3.1013/231-60[»]
5DOYX-ray2.6013/231-60[»]
5E7KX-ray3.20H5/L81-60[»]
5E81X-ray2.95H5/L81-60[»]
5EL4X-ray3.15H5/L81-60[»]
5EL5X-ray3.15H5/L81-60[»]
5EL6X-ray3.10H5/L81-60[»]
5EL7X-ray3.15H5/L81-60[»]
5F8KX-ray2.8013/232-60[»]
5FDUX-ray2.9013/232-60[»]
5FDVX-ray2.8013/232-60[»]
5HAUX-ray3.0011/211-60[»]
5HCPX-ray2.8913/231-60[»]
5HCQX-ray2.8013/231-60[»]
5HCRX-ray2.8013/231-60[»]
5HD1X-ray2.7013/231-60[»]
5IB7X-ray2.99H5/L81-60[»]
5IB8X-ray3.13H5/L81-60[»]
5IBBX-ray2.96H5/L81-60[»]
5IMQelectron microscopy3.80u1-60[»]
5IMRelectron microscopy-u1-60[»]
5J30X-ray3.20R3/Y31-60[»]
5J3CX-ray3.04R3/Y31-60[»]
5J4BX-ray2.6013/231-60[»]
5J4CX-ray2.8013/231-60[»]
5J8BX-ray2.6031-60[»]
ProteinModelPortaliQ5SHQ6.
SMRiQ5SHQ6.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHQ6.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L30P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG410856V. Bacteria.
COG1841. LUCA.
HOGENOMiHOG000039916.
KOiK02907.
OMAiMVFKVKH.

Family and domain databases

CDDicd01658. Ribosomal_L30. 1 hit.
Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B. 1 hit.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SHQ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV
60
AHLVRVEVVE
Length:60
Mass (Da):6,785
Last modified:January 23, 2007 - v3
Checksum:iCDC6675F81A8D327
GO

Mass spectrometryi

Molecular mass is 6655 Da from positions 2 - 60. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71497.1.
RefSeqiWP_008633387.1. NC_006461.1.
YP_144940.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71497; BAD71497; BAD71497.
GeneIDi3169818.
KEGGittj:TTHA1674.
PATRICi23958303. VBITheThe93045_1644.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71497.1.
RefSeqiWP_008633387.1. NC_006461.1.
YP_144940.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R3/Y31-60[»]
1VY4X-ray2.60B3/D31-60[»]
1VY5X-ray2.55B3/D31-60[»]
1VY6X-ray2.90B3/D31-60[»]
1VY7X-ray2.80B3/D31-60[»]
4L47X-ray3.22R3/Y31-60[»]
4L71X-ray3.90R3/Y31-60[»]
4LELX-ray3.90R3/Y31-60[»]
4LFZX-ray3.92R3/Y31-60[»]
4LNTX-ray2.94R3/Y31-60[»]
4LSKX-ray3.48R3/Y31-60[»]
4LT8X-ray3.14R3/Y31-60[»]
4P6FX-ray3.60R3/Y31-60[»]
4P70X-ray3.68R3/Y31-60[»]
4TUAX-ray3.60R3/Y31-60[»]
4TUBX-ray3.60R3/Y31-60[»]
4TUCX-ray3.60R3/Y31-60[»]
4TUDX-ray3.60R3/Y31-60[»]
4TUEX-ray3.50R3/Y31-60[»]
4V42X-ray5.50BX1-60[»]
4V4PX-ray5.50AX1-60[»]
4V4RX-ray5.9031-60[»]
4V4SX-ray6.7631-60[»]
4V4TX-ray6.4631-60[»]
4V4XX-ray5.00B21-60[»]
4V4YX-ray5.50B21-60[»]
4V4ZX-ray4.51B21-60[»]
4V51X-ray2.80B3/D32-60[»]
4V5AX-ray3.50B3/D32-60[»]
4V5CX-ray3.30B3/D31-60[»]
4V5DX-ray3.50B3/D31-60[»]
4V5EX-ray3.45B3/D31-60[»]
4V5FX-ray3.60B3/D31-60[»]
4V5GX-ray3.60B3/D31-60[»]
4V5JX-ray3.10B3/D31-60[»]
4V5KX-ray3.20B3/D31-60[»]
4V5LX-ray3.10B31-60[»]
4V5Melectron microscopy7.80B31-60[»]
4V5Nelectron microscopy7.60B31-60[»]
4V5PX-ray3.10B3/D31-60[»]
4V5QX-ray3.10B3/D31-60[»]
4V5RX-ray3.10B3/D31-60[»]
4V5SX-ray3.10B3/D31-60[»]
4V68electron microscopy6.40B31-60[»]
4V6AX-ray3.10B3/D31-60[»]
4V6FX-ray3.10AX/DX1-60[»]
4V6GX-ray3.50BX/DX1-60[»]
4V7JX-ray3.30A3/B31-60[»]
4V7KX-ray3.60A3/B31-60[»]
4V7LX-ray3.00B3/D31-60[»]
4V7MX-ray3.45B3/D31-60[»]
4V7WX-ray3.00B3/D31-60[»]
4V7XX-ray3.00B3/D31-60[»]
4V7YX-ray3.00B3/D31-60[»]
4V7ZX-ray3.10B3/D31-60[»]
4V87X-ray3.10AX/DX2-60[»]
4V8AX-ray3.20A3/B31-60[»]
4V8BX-ray3.00BX/DX1-60[»]
4V8CX-ray3.30AX/BX1-60[»]
4V8DX-ray3.00BX/DX1-60[»]
4V8EX-ray3.30AX/CX1-60[»]
4V8FX-ray3.30AX/DX1-60[»]
4V8GX-ray3.00B3/D31-60[»]
4V8HX-ray3.10B3/D31-60[»]
4V8IX-ray2.70B3/D31-60[»]
4V8JX-ray3.90B3/D31-60[»]
4V8NX-ray3.10B3/D31-60[»]
4V8OX-ray3.80B31-60[»]
4V8QX-ray3.10A31-60[»]
4V8UX-ray3.70B3/D31-60[»]
4V8XX-ray3.35B3/D31-60[»]
4V90X-ray2.95B31-60[»]
4V95X-ray3.20B3/D31-60[»]
4V97X-ray3.52B3/D31-60[»]
4V9AX-ray3.30BX/DX1-60[»]
4V9BX-ray3.10BX/DX1-60[»]
4V9HX-ray2.86B31-60[»]
4V9IX-ray3.30B3/D31-59[»]
4V9RX-ray3.00B3/D31-60[»]
4V9SX-ray3.10B3/D31-60[»]
4W2EX-ray2.9031-60[»]
4W2FX-ray2.40B3/D31-60[»]
4W2GX-ray2.55B3/D31-60[»]
4W2HX-ray2.70B3/D31-60[»]
4W2IX-ray2.70B3/D31-60[»]
4W4GX-ray3.30R3/Y31-60[»]
4WPOX-ray2.80A3/C31-60[»]
4WQ1X-ray3.10H5/L82-60[»]
4WQFX-ray2.80A3/C31-60[»]
4WQRX-ray3.15H5/L81-60[»]
4WQUX-ray2.80A3/C31-60[»]
4WQYX-ray2.80A3/C31-60[»]
4WR6X-ray3.05H5/L81-60[»]
4WRAX-ray3.05H5/L81-60[»]
4WROX-ray3.05L81-60[»]
4WSDX-ray2.95H5/L81-60[»]
4WSMX-ray3.30H5/L81-60[»]
4WT1X-ray3.05H5/L81-60[»]
4WT8X-ray3.40CL/DL1-59[»]
4WU1X-ray3.20H5/L81-60[»]
4WZDX-ray3.10H5/L81-60[»]
4WZOX-ray3.30H5/L81-60[»]
4Y4OX-ray2.3013/231-60[»]
4Y4PX-ray2.5013/231-60[»]
4YPBX-ray3.40R3/Y31-60[»]
4YZVX-ray3.10R3/Y31-60[»]
4Z3SX-ray2.6513/231-60[»]
4Z8CX-ray2.9013/231-60[»]
4ZERX-ray3.1013/232-60[»]
4ZSNX-ray3.60R3/Y31-60[»]
5A9Zelectron microscopy4.70AZ2-60[»]
5AA0electron microscopy5.00AZ2-60[»]
5CZPX-ray3.30R3/Y31-60[»]
5D8BX-ray3.63TB/X1-60[»]
5DFEX-ray3.10R3/Y31-60[»]
5DOXX-ray3.1013/231-60[»]
5DOYX-ray2.6013/231-60[»]
5E7KX-ray3.20H5/L81-60[»]
5E81X-ray2.95H5/L81-60[»]
5EL4X-ray3.15H5/L81-60[»]
5EL5X-ray3.15H5/L81-60[»]
5EL6X-ray3.10H5/L81-60[»]
5EL7X-ray3.15H5/L81-60[»]
5F8KX-ray2.8013/232-60[»]
5FDUX-ray2.9013/232-60[»]
5FDVX-ray2.8013/232-60[»]
5HAUX-ray3.0011/211-60[»]
5HCPX-ray2.8913/231-60[»]
5HCQX-ray2.8013/231-60[»]
5HCRX-ray2.8013/231-60[»]
5HD1X-ray2.7013/231-60[»]
5IB7X-ray2.99H5/L81-60[»]
5IB8X-ray3.13H5/L81-60[»]
5IBBX-ray2.96H5/L81-60[»]
5IMQelectron microscopy3.80u1-60[»]
5IMRelectron microscopy-u1-60[»]
5J30X-ray3.20R3/Y31-60[»]
5J3CX-ray3.04R3/Y31-60[»]
5J4BX-ray2.6013/231-60[»]
5J4CX-ray2.8013/231-60[»]
5J8BX-ray2.6031-60[»]
ProteinModelPortaliQ5SHQ6.
SMRiQ5SHQ6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA1674.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD71497; BAD71497; BAD71497.
GeneIDi3169818.
KEGGittj:TTHA1674.
PATRICi23958303. VBITheThe93045_1644.

Phylogenomic databases

eggNOGiENOG410856V. Bacteria.
COG1841. LUCA.
HOGENOMiHOG000039916.
KOiK02907.
OMAiMVFKVKH.

Miscellaneous databases

EvolutionaryTraceiQ5SHQ6.

Family and domain databases

CDDicd01658. Ribosomal_L30. 1 hit.
Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B. 1 hit.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL30_THET8
AccessioniPrimary (citable) accession number: Q5SHQ6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: November 30, 2016
This is version 106 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.