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Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1713-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30UniRule annotation
Gene namesi
Name:rpmDUniRule annotation
Ordered Locus Names:TTHA1674
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. large ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed2 Publications
Chaini2 – 605950S ribosomal protein L30PRO_0000104616Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1674.

Structurei

Secondary structure

1
60
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 86Combined sources
Helixi17 – 259Combined sources
Beta strandi30 – 323Combined sources
Beta strandi34 – 385Combined sources
Helixi41 – 499Combined sources
Helixi51 – 533Combined sources
Beta strandi54 – 596Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50X1-60[»]
1VVMX-ray3.2231-60[»]
1VVOX-ray3.2231-60[»]
1VVQX-ray3.9031-60[»]
1VVSX-ray3.9031-60[»]
1VVUX-ray3.9031-60[»]
1VVWX-ray3.9031-60[»]
1VVYX-ray3.9231-60[»]
1VW0X-ray3.9231-60[»]
1VX9X-ray2.9431-60[»]
1VXJX-ray2.9431-60[»]
1VXLX-ray3.4831-60[»]
1VXNX-ray3.4831-60[»]
1VXQX-ray3.1431-60[»]
1VXTX-ray3.1431-60[»]
1VY1X-ray3.6831-60[»]
1VY3X-ray3.6831-60[»]
1YL3X-ray5.50X1-60[»]
2B66X-ray5.9031-60[»]
2B9NX-ray6.7631-60[»]
2B9PX-ray6.4631-60[»]
2HGJX-ray5.0021-60[»]
2HGQX-ray5.5021-60[»]
2HGUX-ray4.5121-60[»]
2J01X-ray2.8032-60[»]
2J03X-ray2.8032-60[»]
2V47X-ray3.5032-60[»]
2V49X-ray3.5032-60[»]
2WDIX-ray3.3031-60[»]
2WDJX-ray3.3031-60[»]
2WDLX-ray3.5031-60[»]
2WDNX-ray3.5031-60[»]
2WH2X-ray3.4531-60[»]
2WH4X-ray3.4531-60[»]
2WRJX-ray3.6031-60[»]
2WRLX-ray3.6031-60[»]
2WROX-ray3.6031-60[»]
2WRRX-ray3.6031-60[»]
2X9SX-ray3.1031-60[»]
2X9UX-ray3.1031-60[»]
2XG0X-ray3.2031-60[»]
2XG2X-ray3.2031-60[»]
2XQEX-ray3.1031-60[»]
2XTGelectron microscopy7.8031-60[»]
2XUXelectron microscopy7.6031-60[»]
2Y0VX-ray3.1031-60[»]
2Y0XX-ray3.1031-60[»]
2Y0ZX-ray3.1031-60[»]
2Y11X-ray3.1031-60[»]
2Y13X-ray3.1031-60[»]
2Y15X-ray3.1031-60[»]
2Y17X-ray3.1031-60[»]
2Y19X-ray3.1031-60[»]
3FINelectron microscopy6.4031-60[»]
3HUXX-ray3.1031-60[»]
3HUZX-ray3.1031-60[»]
3I8FX-ray3.10X1-60[»]
3I8IX-ray3.10X1-60[»]
3I9CX-ray3.50X1-60[»]
3I9EX-ray3.50X1-60[»]
3KIRX-ray3.3031-60[»]
3KITX-ray3.3031-60[»]
3KIWX-ray3.6031-60[»]
3KIYX-ray3.6031-60[»]
3KNIX-ray3.0031-60[»]
3KNKX-ray3.0031-60[»]
3KNMX-ray3.4531-60[»]
3KNOX-ray3.4531-60[»]
3OH5X-ray3.0031-60[»]
3OH7X-ray3.0031-60[»]
3OHJX-ray3.0031-60[»]
3OHKX-ray3.0031-60[»]
3OHZX-ray3.0031-60[»]
3OI1X-ray3.0031-60[»]
3OI3X-ray3.1031-60[»]
3OI5X-ray3.1031-60[»]
3TVEX-ray3.10X2-60[»]
3TVHX-ray3.10X2-60[»]
3UXQX-ray3.2031-60[»]
3UXRX-ray3.2031-60[»]
3UYEX-ray3.00X1-60[»]
3UYGX-ray3.00X1-60[»]
3UZ1X-ray3.30X1-60[»]
3UZ2X-ray3.30X1-60[»]
3UZ8X-ray3.00X1-60[»]
3UZ9X-ray3.00X1-60[»]
3UZFX-ray3.30X1-60[»]
3UZHX-ray3.30X1-60[»]
3UZKX-ray3.30X1-60[»]
3UZNX-ray3.30X1-60[»]
3V23X-ray3.0031-60[»]
3V25X-ray3.0031-60[»]
3V27X-ray3.1031-60[»]
3V29X-ray3.1031-60[»]
3V2DX-ray2.7031-60[»]
3V2FX-ray2.7031-60[»]
3V6WX-ray3.9031-60[»]
3V6XX-ray3.9031-60[»]
3ZN9X-ray3.1031-60[»]
3ZNEX-ray3.1031-60[»]
3ZVPX-ray3.8031-60[»]
4ABSX-ray3.1031-60[»]
4B8GX-ray3.7031-60[»]
4B8IX-ray3.7031-60[»]
4BTDX-ray2.9531-60[»]
4BYCX-ray3.3531-60[»]
4BYEX-ray3.3531-60[»]
4DHAX-ray3.2031-60[»]
4DHCX-ray3.2031-60[»]
4EJBX-ray3.5231-60[»]
4EJCX-ray3.5231-60[»]
4G5LX-ray3.30X1-60[»]
4G5NX-ray3.30X1-60[»]
4G5UX-ray3.10X1-60[»]
4G5WX-ray3.10X1-60[»]
4JUXX-ray2.8631-60[»]
4K0MX-ray3.3031-59[»]
4K0QX-ray3.3031-59[»]
4KX0X-ray3.4431-60[»]
4KX2X-ray3.4431-60[»]
4NVVX-ray3.0031-60[»]
4NVXX-ray3.0031-60[»]
4NVZX-ray3.1031-60[»]
4NW1X-ray3.1031-60[»]
4QCNX-ray2.6031-60[»]
4QCPX-ray2.6031-60[»]
4QCRX-ray2.5531-60[»]
4QCTX-ray2.5531-60[»]
4QCVX-ray2.9031-60[»]
4QCXX-ray2.9031-60[»]
4QCZX-ray2.8031-60[»]
4QD1X-ray2.8031-60[»]
4QJSX-ray2.9031-60[»]
4RB6X-ray2.4031-60[»]
4RB8X-ray2.4031-60[»]
4RBAX-ray2.5531-60[»]
4RBCX-ray2.5531-60[»]
4RBEX-ray2.7031-60[»]
4RBGX-ray2.7031-60[»]
4RBIX-ray2.7031-60[»]
4RBKX-ray2.7031-60[»]
ProteinModelPortaliQ5SHQ6.
SMRiQ5SHQ6. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHQ6.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L30P family.UniRule annotation

Phylogenomic databases

eggNOGibactNOG46066.
HOGENOMiHOG000039916.
KOiK02907.
OMAiSDMLDTI.
OrthoDBiEOG6BGP7P.

Family and domain databases

Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SHQ6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV
60
AHLVRVEVVE
Length:60
Mass (Da):6,785
Last modified:January 23, 2007 - v3
Checksum:iCDC6675F81A8D327
GO

Mass spectrometryi

Molecular mass is 6655 Da from positions 2 - 60. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71497.1.
RefSeqiYP_144940.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71497; BAD71497; BAD71497.
GeneIDi3169818.
KEGGittj:TTHA1674.
PATRICi23958303. VBITheThe93045_1644.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71497.1.
RefSeqiYP_144940.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50X1-60[»]
1VVMX-ray3.2231-60[»]
1VVOX-ray3.2231-60[»]
1VVQX-ray3.9031-60[»]
1VVSX-ray3.9031-60[»]
1VVUX-ray3.9031-60[»]
1VVWX-ray3.9031-60[»]
1VVYX-ray3.9231-60[»]
1VW0X-ray3.9231-60[»]
1VX9X-ray2.9431-60[»]
1VXJX-ray2.9431-60[»]
1VXLX-ray3.4831-60[»]
1VXNX-ray3.4831-60[»]
1VXQX-ray3.1431-60[»]
1VXTX-ray3.1431-60[»]
1VY1X-ray3.6831-60[»]
1VY3X-ray3.6831-60[»]
1YL3X-ray5.50X1-60[»]
2B66X-ray5.9031-60[»]
2B9NX-ray6.7631-60[»]
2B9PX-ray6.4631-60[»]
2HGJX-ray5.0021-60[»]
2HGQX-ray5.5021-60[»]
2HGUX-ray4.5121-60[»]
2J01X-ray2.8032-60[»]
2J03X-ray2.8032-60[»]
2V47X-ray3.5032-60[»]
2V49X-ray3.5032-60[»]
2WDIX-ray3.3031-60[»]
2WDJX-ray3.3031-60[»]
2WDLX-ray3.5031-60[»]
2WDNX-ray3.5031-60[»]
2WH2X-ray3.4531-60[»]
2WH4X-ray3.4531-60[»]
2WRJX-ray3.6031-60[»]
2WRLX-ray3.6031-60[»]
2WROX-ray3.6031-60[»]
2WRRX-ray3.6031-60[»]
2X9SX-ray3.1031-60[»]
2X9UX-ray3.1031-60[»]
2XG0X-ray3.2031-60[»]
2XG2X-ray3.2031-60[»]
2XQEX-ray3.1031-60[»]
2XTGelectron microscopy7.8031-60[»]
2XUXelectron microscopy7.6031-60[»]
2Y0VX-ray3.1031-60[»]
2Y0XX-ray3.1031-60[»]
2Y0ZX-ray3.1031-60[»]
2Y11X-ray3.1031-60[»]
2Y13X-ray3.1031-60[»]
2Y15X-ray3.1031-60[»]
2Y17X-ray3.1031-60[»]
2Y19X-ray3.1031-60[»]
3FINelectron microscopy6.4031-60[»]
3HUXX-ray3.1031-60[»]
3HUZX-ray3.1031-60[»]
3I8FX-ray3.10X1-60[»]
3I8IX-ray3.10X1-60[»]
3I9CX-ray3.50X1-60[»]
3I9EX-ray3.50X1-60[»]
3KIRX-ray3.3031-60[»]
3KITX-ray3.3031-60[»]
3KIWX-ray3.6031-60[»]
3KIYX-ray3.6031-60[»]
3KNIX-ray3.0031-60[»]
3KNKX-ray3.0031-60[»]
3KNMX-ray3.4531-60[»]
3KNOX-ray3.4531-60[»]
3OH5X-ray3.0031-60[»]
3OH7X-ray3.0031-60[»]
3OHJX-ray3.0031-60[»]
3OHKX-ray3.0031-60[»]
3OHZX-ray3.0031-60[»]
3OI1X-ray3.0031-60[»]
3OI3X-ray3.1031-60[»]
3OI5X-ray3.1031-60[»]
3TVEX-ray3.10X2-60[»]
3TVHX-ray3.10X2-60[»]
3UXQX-ray3.2031-60[»]
3UXRX-ray3.2031-60[»]
3UYEX-ray3.00X1-60[»]
3UYGX-ray3.00X1-60[»]
3UZ1X-ray3.30X1-60[»]
3UZ2X-ray3.30X1-60[»]
3UZ8X-ray3.00X1-60[»]
3UZ9X-ray3.00X1-60[»]
3UZFX-ray3.30X1-60[»]
3UZHX-ray3.30X1-60[»]
3UZKX-ray3.30X1-60[»]
3UZNX-ray3.30X1-60[»]
3V23X-ray3.0031-60[»]
3V25X-ray3.0031-60[»]
3V27X-ray3.1031-60[»]
3V29X-ray3.1031-60[»]
3V2DX-ray2.7031-60[»]
3V2FX-ray2.7031-60[»]
3V6WX-ray3.9031-60[»]
3V6XX-ray3.9031-60[»]
3ZN9X-ray3.1031-60[»]
3ZNEX-ray3.1031-60[»]
3ZVPX-ray3.8031-60[»]
4ABSX-ray3.1031-60[»]
4B8GX-ray3.7031-60[»]
4B8IX-ray3.7031-60[»]
4BTDX-ray2.9531-60[»]
4BYCX-ray3.3531-60[»]
4BYEX-ray3.3531-60[»]
4DHAX-ray3.2031-60[»]
4DHCX-ray3.2031-60[»]
4EJBX-ray3.5231-60[»]
4EJCX-ray3.5231-60[»]
4G5LX-ray3.30X1-60[»]
4G5NX-ray3.30X1-60[»]
4G5UX-ray3.10X1-60[»]
4G5WX-ray3.10X1-60[»]
4JUXX-ray2.8631-60[»]
4K0MX-ray3.3031-59[»]
4K0QX-ray3.3031-59[»]
4KX0X-ray3.4431-60[»]
4KX2X-ray3.4431-60[»]
4NVVX-ray3.0031-60[»]
4NVXX-ray3.0031-60[»]
4NVZX-ray3.1031-60[»]
4NW1X-ray3.1031-60[»]
4QCNX-ray2.6031-60[»]
4QCPX-ray2.6031-60[»]
4QCRX-ray2.5531-60[»]
4QCTX-ray2.5531-60[»]
4QCVX-ray2.9031-60[»]
4QCXX-ray2.9031-60[»]
4QCZX-ray2.8031-60[»]
4QD1X-ray2.8031-60[»]
4QJSX-ray2.9031-60[»]
4RB6X-ray2.4031-60[»]
4RB8X-ray2.4031-60[»]
4RBAX-ray2.5531-60[»]
4RBCX-ray2.5531-60[»]
4RBEX-ray2.7031-60[»]
4RBGX-ray2.7031-60[»]
4RBIX-ray2.7031-60[»]
4RBKX-ray2.7031-60[»]
ProteinModelPortaliQ5SHQ6.
SMRiQ5SHQ6. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA1674.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD71497; BAD71497; BAD71497.
GeneIDi3169818.
KEGGittj:TTHA1674.
PATRICi23958303. VBITheThe93045_1644.

Phylogenomic databases

eggNOGibactNOG46066.
HOGENOMiHOG000039916.
KOiK02907.
OMAiSDMLDTI.
OrthoDBiEOG6BGP7P.

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1713-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ5SHQ6.

Family and domain databases

Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-23.
  3. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
    Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
    Endocyt. Cell Res. 11:41-58(1995)
    Cited for: PROTEIN SEQUENCE OF 2-14.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  5. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  6. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

Entry informationi

Entry nameiRL30_THET8
AccessioniPrimary (citable) accession number: Q5SHQ6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: February 4, 2015
This is version 88 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.