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Q5SHP9

- RL24_THET8

UniProt

Q5SHP9 - RL24_THET8

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Protein

50S ribosomal protein L24

Gene

rplX

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.By similarity
One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1720-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L24
Gene namesi
Name:rplX
Ordered Locus Names:TTHA1681
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11011050S ribosomal protein L24PRO_0000130741Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1681.

Structurei

Secondary structure

1
110
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi11 – 155
Turni19 – 224
Beta strandi24 – 318
Helixi32 – 343
Beta strandi36 – 394
Beta strandi42 – 487
Beta strandi51 – 555
Beta strandi60 – 645
Helixi69 – 713
Beta strandi72 – 754
Turni77 – 793
Beta strandi85 – 895
Beta strandi91 – 933
Beta strandi95 – 1028
Beta strandi105 – 1073

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50U1-110[»]
1VVMX-ray3.22Y1-110[»]
1VVOX-ray3.22Y1-110[»]
1VVQX-ray3.90Y1-110[»]
1VVSX-ray3.90Y1-110[»]
1VVUX-ray3.90Y1-110[»]
1VVWX-ray3.90Y1-110[»]
1VVYX-ray3.92Y1-110[»]
1VW0X-ray3.92Y1-110[»]
1VX9X-ray2.94Y1-110[»]
1VXJX-ray2.94Y1-110[»]
1VXLX-ray3.48Y1-110[»]
1VXNX-ray3.48Y1-110[»]
1VXQX-ray3.14Y1-110[»]
1VXTX-ray3.14Y1-110[»]
1VY1X-ray3.68Y1-110[»]
1VY3X-ray3.68Y1-110[»]
1YL3X-ray5.50U65-68[»]
2HGJX-ray5.00X1-110[»]
2HGQX-ray5.50X1-110[»]
2HGUX-ray4.51X1-110[»]
2J01X-ray2.80Y1-110[»]
2J03X-ray2.80Y1-110[»]
2V47X-ray3.80Y1-110[»]
2V49X-ray3.80Y1-110[»]
2WDIX-ray3.30Y1-110[»]
2WDJX-ray3.30Y1-110[»]
2WDLX-ray3.50Y1-110[»]
2WDNX-ray3.50Y1-110[»]
2WH2X-ray3.45Y1-110[»]
2WH4X-ray3.45Y1-110[»]
2WRJX-ray3.60Y1-110[»]
2WRLX-ray3.60Y1-110[»]
2WROX-ray3.60Y1-110[»]
2WRRX-ray3.60Y1-110[»]
2X9SX-ray3.10Y1-110[»]
2X9UX-ray3.10Y1-110[»]
2XG0X-ray3.20Y1-110[»]
2XG2X-ray3.20Y1-110[»]
2XQEX-ray3.10Y1-110[»]
2XTGelectron microscopy7.80Y1-110[»]
2XUXelectron microscopy7.60Y1-110[»]
2Y0VX-ray3.10Y1-110[»]
2Y0XX-ray3.10Y1-110[»]
2Y0ZX-ray3.10Y1-110[»]
2Y11X-ray3.10Y1-110[»]
2Y13X-ray3.10Y1-110[»]
2Y15X-ray3.10Y1-110[»]
2Y17X-ray3.10Y1-110[»]
2Y19X-ray3.10Y1-110[»]
3FINelectron microscopy6.40Y2-102[»]
3HUXX-ray3.10Y1-110[»]
3HUZX-ray3.10Y1-110[»]
3I8FX-ray3.10U1-110[»]
3I8IX-ray3.10U1-110[»]
3I9CX-ray3.50U1-110[»]
3I9EX-ray3.50U1-110[»]
3KIRX-ray3.30Y1-110[»]
3KITX-ray3.30Y1-110[»]
3KIWX-ray3.60Y1-110[»]
3KIYX-ray3.60Y1-110[»]
3KNIX-ray3.00Y1-110[»]
3KNKX-ray3.00Y1-110[»]
3KNMX-ray3.45Y1-110[»]
3KNOX-ray3.45Y1-110[»]
3TVEX-ray3.10U2-103[»]
3TVHX-ray3.10U2-103[»]
3UXQX-ray3.20Y1-110[»]
3UXRX-ray3.20Y1-110[»]
3UYEX-ray3.00U1-110[»]
3UYGX-ray3.00U1-110[»]
3UZ1X-ray3.30U1-110[»]
3UZ2X-ray3.30U1-110[»]
3UZ8X-ray3.00U1-110[»]
3UZ9X-ray3.00U1-110[»]
3UZFX-ray3.30U1-110[»]
3UZHX-ray3.30U1-110[»]
3UZKX-ray3.30U1-110[»]
3UZNX-ray3.30U1-110[»]
3V23X-ray3.00Y1-110[»]
3V25X-ray3.00Y1-110[»]
3V27X-ray3.10Y1-110[»]
3V29X-ray3.10Y1-110[»]
3V2DX-ray2.70Y1-110[»]
3V2FX-ray2.70Y1-110[»]
3V6WX-ray3.90Y1-110[»]
3V6XX-ray3.90Y1-110[»]
3ZN9X-ray3.10Y1-110[»]
3ZNEX-ray3.10Y1-110[»]
3ZVPX-ray3.80Y1-110[»]
4ABSX-ray3.10Y1-110[»]
4B8GX-ray3.70Y1-110[»]
4B8IX-ray3.70Y1-110[»]
4BTDX-ray2.95Y2-110[»]
4BYCX-ray3.35Y1-110[»]
4BYEX-ray3.35Y1-110[»]
4DHAX-ray3.20Y1-110[»]
4DHCX-ray3.20Y1-110[»]
4EJBX-ray3.52Y1-110[»]
4EJCX-ray3.52Y1-110[»]
4G5LX-ray3.30U1-110[»]
4G5NX-ray3.30U1-110[»]
4G5UX-ray3.10U1-110[»]
4G5WX-ray3.10U1-110[»]
4JUXX-ray2.86Y1-110[»]
4K0MX-ray3.30Y2-101[»]
4K0QX-ray3.30Y2-101[»]
4KX0X-ray3.44Y1-110[»]
4KX2X-ray3.44Y1-110[»]
4NVVX-ray3.00Y1-110[»]
4NVXX-ray3.00Y1-110[»]
4NVZX-ray3.10Y1-110[»]
4NW1X-ray3.10Y1-110[»]
4QCNX-ray2.60Y1-110[»]
4QCPX-ray2.60Y1-110[»]
4QCRX-ray2.55Y1-110[»]
4QCTX-ray2.55Y1-110[»]
4QCVX-ray2.90Y1-110[»]
4QCXX-ray2.90Y1-110[»]
4QCZX-ray2.80Y1-110[»]
4QD1X-ray2.80Y1-110[»]
ProteinModelPortaliQ5SHP9.
SMRiQ5SHP9. Positions 1-110.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHP9.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L24P family.Curated

Phylogenomic databases

eggNOGiCOG0198.
HOGENOMiHOG000039891.
KOiK02895.
OMAiLYCNKCK.
OrthoDBiEOG6FFSDM.
PhylomeDBiQ5SHP9.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
HAMAPiMF_01326_B. Ribosomal_L24_B.
InterProiIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR003256. Ribosomal_L24.
IPR005825. Ribosomal_L24/26_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR12903. PTHR12903. 1 hit.
PfamiPF00467. KOW. 1 hit.
[Graphical view]
SMARTiSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01079. rplX_bact. 1 hit.
PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SHP9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRVKMHVKKG DTVLVASGKY KGRVGKVKEV LPKKYAVIVE GVNIVKKAVR
60 70 80 90 100
VSPKYPQGGF IEKEAPLHAS KVRPICPACG KPTRVRKKFL ENGKKIRVCA
110
KCGGALDTEE
Length:110
Mass (Da):12,057
Last modified:December 21, 2004 - v1
Checksum:iA9E773D9A86B819A
GO

Mass spectrometryi

Molecular mass is 12057 Da from positions 1 - 110. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71504.1.
RefSeqiWP_011173707.1. NC_006461.1.
YP_144947.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71504; BAD71504; BAD71504.
GeneIDi3169836.
KEGGittj:TTHA1681.
PATRICi23958317. VBITheThe93045_1651.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71504.1 .
RefSeqi WP_011173707.1. NC_006461.1.
YP_144947.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1GIY X-ray 5.50 U 1-110 [» ]
1VVM X-ray 3.22 Y 1-110 [» ]
1VVO X-ray 3.22 Y 1-110 [» ]
1VVQ X-ray 3.90 Y 1-110 [» ]
1VVS X-ray 3.90 Y 1-110 [» ]
1VVU X-ray 3.90 Y 1-110 [» ]
1VVW X-ray 3.90 Y 1-110 [» ]
1VVY X-ray 3.92 Y 1-110 [» ]
1VW0 X-ray 3.92 Y 1-110 [» ]
1VX9 X-ray 2.94 Y 1-110 [» ]
1VXJ X-ray 2.94 Y 1-110 [» ]
1VXL X-ray 3.48 Y 1-110 [» ]
1VXN X-ray 3.48 Y 1-110 [» ]
1VXQ X-ray 3.14 Y 1-110 [» ]
1VXT X-ray 3.14 Y 1-110 [» ]
1VY1 X-ray 3.68 Y 1-110 [» ]
1VY3 X-ray 3.68 Y 1-110 [» ]
1YL3 X-ray 5.50 U 65-68 [» ]
2HGJ X-ray 5.00 X 1-110 [» ]
2HGQ X-ray 5.50 X 1-110 [» ]
2HGU X-ray 4.51 X 1-110 [» ]
2J01 X-ray 2.80 Y 1-110 [» ]
2J03 X-ray 2.80 Y 1-110 [» ]
2V47 X-ray 3.80 Y 1-110 [» ]
2V49 X-ray 3.80 Y 1-110 [» ]
2WDI X-ray 3.30 Y 1-110 [» ]
2WDJ X-ray 3.30 Y 1-110 [» ]
2WDL X-ray 3.50 Y 1-110 [» ]
2WDN X-ray 3.50 Y 1-110 [» ]
2WH2 X-ray 3.45 Y 1-110 [» ]
2WH4 X-ray 3.45 Y 1-110 [» ]
2WRJ X-ray 3.60 Y 1-110 [» ]
2WRL X-ray 3.60 Y 1-110 [» ]
2WRO X-ray 3.60 Y 1-110 [» ]
2WRR X-ray 3.60 Y 1-110 [» ]
2X9S X-ray 3.10 Y 1-110 [» ]
2X9U X-ray 3.10 Y 1-110 [» ]
2XG0 X-ray 3.20 Y 1-110 [» ]
2XG2 X-ray 3.20 Y 1-110 [» ]
2XQE X-ray 3.10 Y 1-110 [» ]
2XTG electron microscopy 7.80 Y 1-110 [» ]
2XUX electron microscopy 7.60 Y 1-110 [» ]
2Y0V X-ray 3.10 Y 1-110 [» ]
2Y0X X-ray 3.10 Y 1-110 [» ]
2Y0Z X-ray 3.10 Y 1-110 [» ]
2Y11 X-ray 3.10 Y 1-110 [» ]
2Y13 X-ray 3.10 Y 1-110 [» ]
2Y15 X-ray 3.10 Y 1-110 [» ]
2Y17 X-ray 3.10 Y 1-110 [» ]
2Y19 X-ray 3.10 Y 1-110 [» ]
3FIN electron microscopy 6.40 Y 2-102 [» ]
3HUX X-ray 3.10 Y 1-110 [» ]
3HUZ X-ray 3.10 Y 1-110 [» ]
3I8F X-ray 3.10 U 1-110 [» ]
3I8I X-ray 3.10 U 1-110 [» ]
3I9C X-ray 3.50 U 1-110 [» ]
3I9E X-ray 3.50 U 1-110 [» ]
3KIR X-ray 3.30 Y 1-110 [» ]
3KIT X-ray 3.30 Y 1-110 [» ]
3KIW X-ray 3.60 Y 1-110 [» ]
3KIY X-ray 3.60 Y 1-110 [» ]
3KNI X-ray 3.00 Y 1-110 [» ]
3KNK X-ray 3.00 Y 1-110 [» ]
3KNM X-ray 3.45 Y 1-110 [» ]
3KNO X-ray 3.45 Y 1-110 [» ]
3TVE X-ray 3.10 U 2-103 [» ]
3TVH X-ray 3.10 U 2-103 [» ]
3UXQ X-ray 3.20 Y 1-110 [» ]
3UXR X-ray 3.20 Y 1-110 [» ]
3UYE X-ray 3.00 U 1-110 [» ]
3UYG X-ray 3.00 U 1-110 [» ]
3UZ1 X-ray 3.30 U 1-110 [» ]
3UZ2 X-ray 3.30 U 1-110 [» ]
3UZ8 X-ray 3.00 U 1-110 [» ]
3UZ9 X-ray 3.00 U 1-110 [» ]
3UZF X-ray 3.30 U 1-110 [» ]
3UZH X-ray 3.30 U 1-110 [» ]
3UZK X-ray 3.30 U 1-110 [» ]
3UZN X-ray 3.30 U 1-110 [» ]
3V23 X-ray 3.00 Y 1-110 [» ]
3V25 X-ray 3.00 Y 1-110 [» ]
3V27 X-ray 3.10 Y 1-110 [» ]
3V29 X-ray 3.10 Y 1-110 [» ]
3V2D X-ray 2.70 Y 1-110 [» ]
3V2F X-ray 2.70 Y 1-110 [» ]
3V6W X-ray 3.90 Y 1-110 [» ]
3V6X X-ray 3.90 Y 1-110 [» ]
3ZN9 X-ray 3.10 Y 1-110 [» ]
3ZNE X-ray 3.10 Y 1-110 [» ]
3ZVP X-ray 3.80 Y 1-110 [» ]
4ABS X-ray 3.10 Y 1-110 [» ]
4B8G X-ray 3.70 Y 1-110 [» ]
4B8I X-ray 3.70 Y 1-110 [» ]
4BTD X-ray 2.95 Y 2-110 [» ]
4BYC X-ray 3.35 Y 1-110 [» ]
4BYE X-ray 3.35 Y 1-110 [» ]
4DHA X-ray 3.20 Y 1-110 [» ]
4DHC X-ray 3.20 Y 1-110 [» ]
4EJB X-ray 3.52 Y 1-110 [» ]
4EJC X-ray 3.52 Y 1-110 [» ]
4G5L X-ray 3.30 U 1-110 [» ]
4G5N X-ray 3.30 U 1-110 [» ]
4G5U X-ray 3.10 U 1-110 [» ]
4G5W X-ray 3.10 U 1-110 [» ]
4JUX X-ray 2.86 Y 1-110 [» ]
4K0M X-ray 3.30 Y 2-101 [» ]
4K0Q X-ray 3.30 Y 2-101 [» ]
4KX0 X-ray 3.44 Y 1-110 [» ]
4KX2 X-ray 3.44 Y 1-110 [» ]
4NVV X-ray 3.00 Y 1-110 [» ]
4NVX X-ray 3.00 Y 1-110 [» ]
4NVZ X-ray 3.10 Y 1-110 [» ]
4NW1 X-ray 3.10 Y 1-110 [» ]
4QCN X-ray 2.60 Y 1-110 [» ]
4QCP X-ray 2.60 Y 1-110 [» ]
4QCR X-ray 2.55 Y 1-110 [» ]
4QCT X-ray 2.55 Y 1-110 [» ]
4QCV X-ray 2.90 Y 1-110 [» ]
4QCX X-ray 2.90 Y 1-110 [» ]
4QCZ X-ray 2.80 Y 1-110 [» ]
4QD1 X-ray 2.80 Y 1-110 [» ]
ProteinModelPortali Q5SHP9.
SMRi Q5SHP9. Positions 1-110.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1681.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71504 ; BAD71504 ; BAD71504 .
GeneIDi 3169836.
KEGGi ttj:TTHA1681.
PATRICi 23958317. VBITheThe93045_1651.

Phylogenomic databases

eggNOGi COG0198.
HOGENOMi HOG000039891.
KOi K02895.
OMAi LYCNKCK.
OrthoDBi EOG6FFSDM.
PhylomeDBi Q5SHP9.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1720-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5SHP9.

Family and domain databases

Gene3Di 2.30.30.30. 1 hit.
HAMAPi MF_01326_B. Ribosomal_L24_B.
InterProi IPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR003256. Ribosomal_L24.
IPR005825. Ribosomal_L24/26_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view ]
PANTHERi PTHR12903. PTHR12903. 1 hit.
Pfami PF00467. KOW. 1 hit.
[Graphical view ]
SMARTi SM00739. KOW. 1 hit.
[Graphical view ]
SUPFAMi SSF50104. SSF50104. 1 hit.
TIGRFAMsi TIGR01079. rplX_bact. 1 hit.
PROSITEi PS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
    Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
    Endocyt. Cell Res. 11:41-58(1995)
    Cited for: PROTEIN SEQUENCE OF 1-44.
  3. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-24.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  5. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  6. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

Entry informationi

Entry nameiRL24_THET8
AccessioniPrimary (citable) accession number: Q5SHP9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: October 29, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3