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Q5SHP9 (RL24_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 71. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L24
Gene names
Name:rplX
Ordered Locus Names:TTHA1681
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length110 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit By similarity. HAMAP-Rule MF_01326_B

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. HAMAP-Rule MF_01326_B

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L24P family.

Mass spectrometry

Molecular mass is 12057 Da from positions 1 - 110. Determined by MALDI. Ref.4

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 11011050S ribosomal protein L24 HAMAP-Rule MF_01326_B
PRO_0000130741

Secondary structure

1 ............................. 110
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5SHP9 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: A9E773D9A86B819A

FASTA11012,057
        10         20         30         40         50         60 
MRVKMHVKKG DTVLVASGKY KGRVGKVKEV LPKKYAVIVE GVNIVKKAVR VSPKYPQGGF 

        70         80         90        100        110 
IEKEAPLHAS KVRPICPACG KPTRVRKKFL ENGKKIRVCA KCGGALDTEE

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
Endocyt. Cell Res. 11:41-58(1995)
Cited for: PROTEIN SEQUENCE OF 1-44.
[3]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-24.
[4]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[5]"The path of messenger RNA through the ribosome."
Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[6]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008226 Genomic DNA. Translation: BAD71504.1.
RefSeqYP_144947.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50U1-110[»]
1YL3X-ray5.50U65-68[»]
2HGJX-ray5.00X1-110[»]
2HGQX-ray5.50X1-110[»]
2HGUX-ray4.51X1-110[»]
2J01X-ray2.80Y1-110[»]
2J03X-ray2.80Y1-110[»]
2V47X-ray3.80Y1-110[»]
2V49X-ray3.80Y1-110[»]
2WDIX-ray3.30Y1-110[»]
2WDJX-ray3.30Y1-110[»]
2WDLX-ray3.50Y1-110[»]
2WDNX-ray3.50Y1-110[»]
2WH2X-ray3.45Y1-110[»]
2WH4X-ray3.45Y1-110[»]
2WRJX-ray3.60Y1-110[»]
2WRLX-ray3.60Y1-110[»]
2WROX-ray3.60Y1-110[»]
2WRRX-ray3.60Y1-110[»]
2X9SX-ray3.10Y1-110[»]
2X9UX-ray3.10Y1-110[»]
2XG0X-ray3.20Y1-110[»]
2XG2X-ray3.20Y1-110[»]
2XQEX-ray3.10Y1-110[»]
2XTGelectron microscopy7.80Y1-110[»]
2XUXelectron microscopy7.60Y1-110[»]
2Y0VX-ray3.10Y1-110[»]
2Y0XX-ray3.10Y1-110[»]
2Y0ZX-ray3.10Y1-110[»]
2Y11X-ray3.10Y1-110[»]
2Y13X-ray3.10Y1-110[»]
2Y15X-ray3.10Y1-110[»]
2Y17X-ray3.10Y1-110[»]
2Y19X-ray3.10Y1-110[»]
3FINelectron microscopy6.40Y2-102[»]
3HUXX-ray3.10Y1-110[»]
3HUZX-ray3.10Y1-110[»]
3I8FX-ray3.10U1-110[»]
3I8IX-ray3.10U1-110[»]
3I9CX-ray3.50U1-110[»]
3I9EX-ray3.50U1-110[»]
3KIRX-ray3.30Y1-110[»]
3KITX-ray3.30Y1-110[»]
3KIWX-ray3.60Y1-110[»]
3KIYX-ray3.60Y1-110[»]
3KNIX-ray3.00Y1-110[»]
3KNKX-ray3.00Y1-110[»]
3KNMX-ray3.45Y1-110[»]
3KNOX-ray3.45Y1-110[»]
3TVEX-ray3.10U2-103[»]
3TVHX-ray3.10U2-103[»]
3UXQX-ray3.20Y1-110[»]
3UXRX-ray3.20Y1-110[»]
3UYEX-ray3.00U1-110[»]
3UYGX-ray3.00U1-110[»]
3UZ1X-ray3.30U1-110[»]
3UZ2X-ray3.30U1-110[»]
3UZ8X-ray3.00U1-110[»]
3UZ9X-ray3.00U1-110[»]
3UZFX-ray3.30U1-110[»]
3UZHX-ray3.30U1-110[»]
3UZKX-ray3.30U1-110[»]
3UZNX-ray3.30U1-110[»]
3V23X-ray3.00Y1-110[»]
3V25X-ray3.00Y1-110[»]
3V27X-ray3.10Y1-110[»]
3V29X-ray3.10Y1-110[»]
3V2DX-ray2.70Y1-110[»]
3V2FX-ray2.70Y1-110[»]
3ZVPX-ray3.80Y1-110[»]
4ABSX-ray3.10Y1-110[»]
4DHAX-ray3.20Y1-110[»]
4DHCX-ray3.20Y1-110[»]
4G5LX-ray3.30U1-110[»]
4G5NX-ray3.30U1-110[»]
4G5UX-ray3.10U1-110[»]
4G5WX-ray3.10U1-110[»]
ProteinModelPortalQ5SHP9.
SMRQ5SHP9. Positions 1-110.
ModBaseSearch...

Protein-protein interaction databases

STRING300852.TTHA1681.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD71504; BAD71504; BAD71504.
GeneID3169836.
KEGGttj:TTHA1681.
PATRIC23958317. VBITheThe93045_1651.

Phylogenomic databases

eggNOGCOG0198.
HOGENOMHOG000039891.
KOK02895.
OMAEGSIHAS.
ProtClustDBPRK00004.

Family and domain databases

Gene3D2.30.30.30. 1 hit.
HAMAPMF_01326_B. Ribosomal_L24_B.
InterProIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR003256. Ribosomal_L24.
IPR005825. Ribosomal_L24/26_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERPTHR12903. PTHR12903. 1 hit.
PfamPF00467. KOW. 1 hit.
[Graphical view]
SMARTSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMSSF50104. Transl_SH3_like. 1 hit.
TIGRFAMsTIGR01079. rplX_bact. 1 hit.
PROSITEPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ5SHP9.

Entry information

Entry nameRL24_THET8
AccessionPrimary (citable) accession number: Q5SHP9
Entry history
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: May 1, 2013
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents