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Protein

50S ribosomal protein L24

Gene

rplX

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.By similarity
One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1687-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L24
Gene namesi
Name:rplX
Ordered Locus Names:TTHA1681
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001307411 – 11050S ribosomal protein L24Add BLAST110

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1681

Structurei

Secondary structure

1110
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi13 – 15Combined sources3
Beta strandi51 – 55Combined sources5
Beta strandi71 – 74Combined sources4
Beta strandi76 – 79Combined sources4
Beta strandi83 – 86Combined sources4
Turni88 – 90Combined sources3
Beta strandi93 – 96Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RY/YY1-110[»]
1VY4X-ray2.60BY/DY1-110[»]
1VY5X-ray2.55BY/DY1-110[»]
1VY6X-ray2.90BY/DY1-110[»]
1VY7X-ray2.80BY/DY1-110[»]
4L47X-ray3.22RY/YY1-110[»]
4L71X-ray3.90RY/YY1-110[»]
4LELX-ray3.90RY/YY1-110[»]
4LFZX-ray3.92RY/YY1-110[»]
4LNTX-ray2.94RY/YY1-110[»]
4LSKX-ray3.48RY/YY1-110[»]
4LT8X-ray3.14RY/YY1-110[»]
4P6FX-ray3.60RY/YY1-110[»]
4P70X-ray3.68RY/YY1-110[»]
4TUAX-ray3.60RY/YY1-110[»]
4TUBX-ray3.60RY/YY1-110[»]
4TUCX-ray3.60RY/YY1-110[»]
4TUDX-ray3.60RY/YY1-110[»]
4TUEX-ray3.50RY/YY1-110[»]
4V42X-ray5.50BU1-110[»]
4V4PX-ray5.50U65-68[»]
4V4XX-ray5.00BX1-110[»]
4V4YX-ray5.50BX1-110[»]
4V4ZX-ray4.51BX1-110[»]
4V51X-ray2.80BY/DY1-110[»]
4V5AX-ray3.50BY/DY1-110[»]
4V5CX-ray3.30BY/DY1-110[»]
4V5DX-ray3.50BY/DY1-110[»]
4V5EX-ray3.45BY/DY1-110[»]
4V5FX-ray3.60BY/DY1-110[»]
4V5GX-ray3.60BY/DY1-110[»]
4V5JX-ray3.10BY/DY1-110[»]
4V5KX-ray3.20BY/DY1-110[»]
4V5LX-ray3.10BY1-110[»]
4V5Melectron microscopy7.80BY1-110[»]
4V5Nelectron microscopy7.60BY1-110[»]
4V5PX-ray3.10BY/DY1-110[»]
4V5QX-ray3.10BY/DY1-110[»]
4V5RX-ray3.10BY/DY1-110[»]
4V5SX-ray3.10BY/DY1-110[»]
4V68electron microscopy6.40BY2-102[»]
4V6AX-ray3.10BY/DY1-110[»]
4V6FX-ray3.10AU/DU1-110[»]
4V6GX-ray3.50BU/DU1-110[»]
4V7JX-ray3.30AY/BY1-110[»]
4V7KX-ray3.60AY/BY1-110[»]
4V7LX-ray3.00BY/DY1-110[»]
4V7MX-ray3.45BY/DY1-110[»]
4V7WX-ray3.00BY/DY1-110[»]
4V7XX-ray3.00BY/DY1-110[»]
4V7YX-ray3.00BY/DY1-110[»]
4V7ZX-ray3.10BY/DY1-110[»]
4V87X-ray3.10AU/DU2-103[»]
4V8AX-ray3.20AY/BY1-110[»]
4V8BX-ray3.00BU/DU1-110[»]
4V8CX-ray3.30AU/BU1-110[»]
4V8DX-ray3.00BU/DU1-110[»]
4V8EX-ray3.30AU/CU1-110[»]
4V8FX-ray3.30AU/DU1-110[»]
4V8GX-ray3.00BY/DY1-110[»]
4V8HX-ray3.10BY/DY1-110[»]
4V8IX-ray2.70BY/DY1-110[»]
4V8JX-ray3.90BY/DY1-110[»]
4V8NX-ray3.10BY/DY1-110[»]
4V8OX-ray3.80BY1-110[»]
4V8QX-ray3.10AY1-110[»]
4V8UX-ray3.70BY/DY1-110[»]
4V8XX-ray3.35BY/DY1-110[»]
4V90X-ray2.95BY2-110[»]
4V95X-ray3.20BY/DY1-110[»]
4V97X-ray3.52BY/DY1-110[»]
4V9AX-ray3.30BU/DU1-110[»]
4V9BX-ray3.10BU/DU1-110[»]
4V9HX-ray2.86BY1-110[»]
4V9IX-ray3.30BY/DY2-101[»]
4V9RX-ray3.00BY/DY1-110[»]
4V9SX-ray3.10BY/DY1-110[»]
4W2EX-ray2.90Y1-110[»]
4W2FX-ray2.40BY/DY1-110[»]
4W2GX-ray2.55BY/DY1-110[»]
4W2HX-ray2.70BY/DY1-110[»]
4W2IX-ray2.70BY/DY1-110[»]
4W4GX-ray3.30RY/YY1-110[»]
4WPOX-ray2.80AY/CY1-110[»]
4WQ1X-ray3.10C5/G81-110[»]
4WQFX-ray2.80AY/CY1-110[»]
4WQRX-ray3.15C5/G81-110[»]
4WQUX-ray2.80AY/CY1-110[»]
4WQYX-ray2.80AY/CY1-110[»]
4WR6X-ray3.05C5/G81-110[»]
4WRAX-ray3.05C5/G81-110[»]
4WROX-ray3.05G81-110[»]
4WSDX-ray2.95C5/G81-110[»]
4WSMX-ray3.30C5/G81-110[»]
4WT1X-ray3.05C5/G81-110[»]
4WT8X-ray3.40CY/DY2-101[»]
4WU1X-ray3.20C5/G81-110[»]
4WZDX-ray3.10C5/G81-110[»]
4WZOX-ray3.30C5/G81-110[»]
4Y4OX-ray2.301Y/2Y1-110[»]
4Y4PX-ray2.501Y/2Y1-110[»]
4YPBX-ray3.40RY/YY1-110[»]
4YZVX-ray3.10RY/YY1-110[»]
4Z3SX-ray2.651Y/2Y1-110[»]
4Z8CX-ray2.901Y/2Y1-110[»]
4ZERX-ray3.101Y/2Y1-107[»]
4ZSNX-ray3.60RY/YY1-110[»]
5A9Zelectron microscopy4.70AV1-110[»]
5AA0electron microscopy5.00AV1-110[»]
5CZPX-ray3.30RY/YY1-110[»]
5D8BX-ray3.63OB/S1-110[»]
5DFEX-ray3.10RY/YY1-110[»]
5DOXX-ray3.101Y/2Y1-110[»]
5DOYX-ray2.601Y/2Y1-110[»]
5E7KX-ray3.20C5/G81-110[»]
5E81X-ray2.95C5/G81-110[»]
5EL4X-ray3.15C5/G81-110[»]
5EL5X-ray3.15C5/G81-110[»]
5EL6X-ray3.10C5/G81-110[»]
5EL7X-ray3.15C5/G81-110[»]
5F8KX-ray2.801Y/2Y1-107[»]
5FDUX-ray2.901Y/2Y1-107[»]
5FDVX-ray2.801Y/2Y1-107[»]
5HAUX-ray3.001W/2W1-110[»]
5HCPX-ray2.891Y/2Y1-110[»]
5HCQX-ray2.801Y/2Y1-110[»]
5HCRX-ray2.801Y/2Y1-110[»]
5HD1X-ray2.701Y/2Y1-110[»]
5IB7X-ray2.99C5/G81-110[»]
5IB8X-ray3.13C5/G81-110[»]
5IBBX-ray2.96C5/G81-110[»]
5IMQelectron microscopy3.80q1-110[»]
5IMRelectron microscopy-q1-110[»]
5J30X-ray3.20RY/YY1-110[»]
5J3CX-ray3.04RY/YY1-110[»]
5J4BX-ray2.601Y/2Y1-110[»]
5J4CX-ray2.801Y/2Y1-110[»]
5J8BX-ray2.60Y1-110[»]
5NDKX-ray2.95C5/G81-110[»]
5OT7electron microscopy3.80z2-102[»]
5UQ7electron microscopy3.50Y1-107[»]
5UQ8electron microscopy3.20Y1-107[»]
5VP2X-ray2.801Y/2Y1-110[»]
5W4KX-ray2.701Y/2Y1-110[»]
5WISX-ray2.701Y/2Y1-110[»]
5WITX-ray2.601Y/2Y1-110[»]
6C5LX-ray3.20BY/DY1-110[»]
6CFJX-ray2.801Y/2Y1-110[»]
6CFKX-ray2.701Y/2Y1-110[»]
ProteinModelPortaliQ5SHP9
SMRiQ5SHP9
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHP9

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105KAR Bacteria
COG0198 LUCA
HOGENOMiHOG000039891
KOiK02895
OMAiPQGGIVE
PhylomeDBiQ5SHP9

Family and domain databases

Gene3Di2.30.30.30, 1 hit
HAMAPiMF_01326_B Ribosomal_L24_B, 1 hit
InterProiView protein in InterPro
IPR005824 KOW
IPR014722 Rib_L2_dom2
IPR003256 Ribosomal_L24
IPR005825 Ribosomal_L24/26_CS
IPR008991 Translation_prot_SH3-like_sf
PANTHERiPTHR12903 PTHR12903, 1 hit
PfamiView protein in Pfam
PF00467 KOW, 1 hit
PF17136 ribosomal_L24, 1 hit
SMARTiView protein in SMART
SM00739 KOW, 1 hit
SUPFAMiSSF50104 SSF50104, 1 hit
TIGRFAMsiTIGR01079 rplX_bact, 1 hit
PROSITEiView protein in PROSITE
PS01108 RIBOSOMAL_L24, 1 hit

Sequencei

Sequence statusi: Complete.

Q5SHP9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVKMHVKKG DTVLVASGKY KGRVGKVKEV LPKKYAVIVE GVNIVKKAVR
60 70 80 90 100
VSPKYPQGGF IEKEAPLHAS KVRPICPACG KPTRVRKKFL ENGKKIRVCA
110
KCGGALDTEE
Length:110
Mass (Da):12,057
Last modified:December 21, 2004 - v1
Checksum:iA9E773D9A86B819A
GO

Mass spectrometryi

Molecular mass is 12057 Da from positions 1 - 110. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA Translation: BAD71504.1
RefSeqiWP_011173707.1, NC_006461.1
YP_144947.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD71504; BAD71504; BAD71504
GeneIDi3169836
KEGGittj:TTHA1681
PATRICifig|300852.9.peg.1651

Similar proteinsi

Entry informationi

Entry nameiRL24_THET8
AccessioniPrimary (citable) accession number: Q5SHP9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: April 25, 2018
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome
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Main funding by: National Institutes of Health