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Q5SHP8 (RL14_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 87. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L14
Gene names
Name:rplN
Ordered Locus Names:TTHA1682
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length122 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

This protein binds directly to 23S ribosomal RNA By similarity. HAMAP-Rule MF_01367

Contacts the 16S rRNA of the 30S subunit in two different positions helping to form bridges B5 and B8. HAMAP-Rule MF_01367

Subunit structure

Part of the 50S ribosomal subunit. Contacts protein L19. Forms a bridge to the 30S subunit in the 70S ribosome, contacting the 16S rRNA. Ref.5

Sequence similarities

Belongs to the ribosomal protein L14P family.

Mass spectrometry

Molecular mass is 13304 Da from positions 1 - 122. Determined by MALDI. Ref.3

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 12212250S ribosomal protein L14 HAMAP-Rule MF_01367
PRO_0000128566

Secondary structure

............................. 122
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5SHP8 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: 9305B92EBAAB9B6C

FASTA12213,303
        10         20         30         40         50         60 
MIQPQTYLEV ADNTGARKIM CIRVLKGSNA KYATVGDVIV ASVKEAIPRG AVKEGDVVKA 

        70         80         90        100        110        120 
VVVRTKKEIK RPDGSAIRFD DNAAVIINNQ LEPRGTRVFG PVARELREKG FMKIVSLAPE 


VL 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-15.
[3]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[4]"The path of messenger RNA through the ribosome."
Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[5]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME, INTERSUBUNIT BRIDGE FORMATION.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008226 Genomic DNA. Translation: BAD71505.1.
RefSeqYP_144948.1. NC_006461.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50N57-121[»]
1YL3X-ray5.50N52-121[»]
2HGJX-ray5.00N1-122[»]
2HGQX-ray5.50N1-122[»]
2HGUX-ray4.51N1-122[»]
2J01X-ray2.80O1-122[»]
2J03X-ray2.80O1-122[»]
2V47X-ray3.80O1-122[»]
2V49X-ray3.80O1-122[»]
2WDIX-ray3.30O1-122[»]
2WDJX-ray3.30O1-122[»]
2WDLX-ray3.50O1-122[»]
2WDNX-ray3.50O1-122[»]
2WH2X-ray3.45O1-122[»]
2WH4X-ray3.45O1-122[»]
2WRJX-ray3.60O1-122[»]
2WRLX-ray3.60O1-122[»]
2WROX-ray3.60O1-122[»]
2WRRX-ray3.60O1-122[»]
2X9SX-ray3.10O1-122[»]
2X9UX-ray3.10O1-122[»]
2XG0X-ray3.20O1-122[»]
2XG2X-ray3.20O1-122[»]
2XQEX-ray3.10O1-122[»]
2XTGelectron microscopy7.80O1-122[»]
2XUXelectron microscopy7.60O1-122[»]
2Y0VX-ray3.10O1-122[»]
2Y0XX-ray3.10O1-122[»]
2Y0ZX-ray3.10O1-122[»]
2Y11X-ray3.10O1-122[»]
2Y13X-ray3.10O1-122[»]
2Y15X-ray3.10O1-122[»]
2Y17X-ray3.10O1-122[»]
2Y19X-ray3.10O1-122[»]
3FINelectron microscopy6.40O1-122[»]
3HUXX-ray3.10O1-122[»]
3HUZX-ray3.10O1-122[»]
3I8FX-ray3.10N1-122[»]
3I8IX-ray3.10N1-122[»]
3I9CX-ray3.50N1-122[»]
3I9EX-ray3.50N1-122[»]
3KIRX-ray3.30O1-122[»]
3KITX-ray3.30O1-122[»]
3KIWX-ray3.60O1-122[»]
3KIYX-ray3.60O1-122[»]
3KNIX-ray3.00O1-122[»]
3KNKX-ray3.00O1-122[»]
3KNMX-ray3.45O1-122[»]
3KNOX-ray3.45O1-122[»]
3TVEX-ray3.10N1-122[»]
3TVHX-ray3.10N1-122[»]
3UXQX-ray3.20O1-122[»]
3UXRX-ray3.20O1-122[»]
3UYEX-ray3.00N1-122[»]
3UYGX-ray3.00N1-122[»]
3UZ1X-ray3.30N1-122[»]
3UZ2X-ray3.30N1-122[»]
3UZ8X-ray3.00N1-122[»]
3UZ9X-ray3.00N1-122[»]
3UZFX-ray3.30N1-122[»]
3UZHX-ray3.30N1-122[»]
3UZKX-ray3.30N1-122[»]
3UZNX-ray3.30N1-122[»]
3V23X-ray3.00O1-122[»]
3V25X-ray3.00O1-122[»]
3V27X-ray3.10O1-122[»]
3V29X-ray3.10O1-122[»]
3V2DX-ray2.70O1-122[»]
3V2FX-ray2.70O1-122[»]
3V6WX-ray3.90O1-122[»]
3V6XX-ray3.90O1-122[»]
3ZN9X-ray3.10O1-122[»]
3ZNEX-ray3.10O1-122[»]
3ZVPX-ray3.80O1-122[»]
4ABSX-ray3.10O1-122[»]
4B8GX-ray3.70O1-122[»]
4B8IX-ray3.70O1-122[»]
4BTDX-ray2.95O1-122[»]
4BYCX-ray3.35O1-122[»]
4BYEX-ray3.35O1-122[»]
4DHAX-ray3.20O1-122[»]
4DHCX-ray3.20O1-122[»]
4EJBX-ray3.52O1-122[»]
4EJCX-ray3.52O1-122[»]
4G5LX-ray3.30N1-122[»]
4G5NX-ray3.30N1-122[»]
4G5UX-ray3.10N1-122[»]
4G5WX-ray3.10N1-122[»]
4JUXX-ray2.86O1-122[»]
4K0MX-ray3.30O1-122[»]
4K0QX-ray3.30O1-122[»]
4NVVX-ray3.00O1-122[»]
4NVXX-ray3.00O1-122[»]
4NVZX-ray3.10O1-122[»]
4NW1X-ray3.10O1-122[»]
ProteinModelPortalQ5SHP8.
SMRQ5SHP8. Positions 1-122.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA1682.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD71505; BAD71505; BAD71505.
GeneID3168727.
KEGGttj:TTHA1682.
PATRIC23958319. VBITheThe93045_1652.

Phylogenomic databases

eggNOGCOG0093.
HOGENOMHOG000183702.
KOK02874.
OMATPNMPVK.
OrthoDBEOG6GBMJ6.
PhylomeDBQ5SHP8.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-1721-MONOMER.

Family and domain databases

Gene3D2.40.150.20. 1 hit.
HAMAPMF_01367. Ribosomal_L14.
InterProIPR005745. Ribosomal_L14_bac-type.
IPR019972. Ribosomal_L14_CS.
IPR023571. Ribosomal_L14_dom.
IPR000218. Ribosomal_L14b/L23e.
[Graphical view]
PANTHERPTHR11761. PTHR11761. 1 hit.
PfamPF00238. Ribosomal_L14. 1 hit.
[Graphical view]
SUPFAMSSF50193. SSF50193. 1 hit.
TIGRFAMsTIGR01067. rplN_bact. 1 hit.
PROSITEPS00049. RIBOSOMAL_L14. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ5SHP8.

Entry information

Entry nameRL14_THET8
AccessionPrimary (citable) accession number: Q5SHP8
Entry history
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: July 9, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references