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Q5SHP8

- RL14_THET8

UniProt

Q5SHP8 - RL14_THET8

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Protein

50S ribosomal protein L14

Gene

rplN

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

This protein binds directly to 23S ribosomal RNA.By similarity
Contacts the 16S rRNA of the 30S subunit in two different positions helping to form bridges B5 and B8.

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1721-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L14UniRule annotation
Gene namesi
Name:rplNUniRule annotation
Ordered Locus Names:TTHA1682
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. large ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12212250S ribosomal protein L14PRO_0000128566Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L19. Forms a bridge to the 30S subunit in the 70S ribosome, contacting the 16S rRNA.

Protein-protein interaction databases

STRINGi300852.TTHA1682.

Structurei

Secondary structure

1
122
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi7 – 104
Beta strandi12 – 2615
Turni27 – 293
Beta strandi38 – 469
Beta strandi48 – 525
Beta strandi57 – 648
Beta strandi69 – 713
Beta strandi72 – 743
Beta strandi76 – 816
Beta strandi83 – 875
Turni89 – 913
Beta strandi93 – 964
Beta strandi100 – 1034
Helixi105 – 1084
Helixi112 – 1176
Beta strandi118 – 1225

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50N57-121[»]
1VVMX-ray3.22O1-122[»]
1VVOX-ray3.22O1-122[»]
1VVQX-ray3.90O1-122[»]
1VVSX-ray3.90O1-122[»]
1VVUX-ray3.90O1-122[»]
1VVWX-ray3.90O1-122[»]
1VVYX-ray3.92O1-122[»]
1VW0X-ray3.92O1-122[»]
1VX9X-ray2.94O1-122[»]
1VXJX-ray2.94O1-122[»]
1VXLX-ray3.48O1-122[»]
1VXNX-ray3.48O1-122[»]
1VXQX-ray3.14O1-122[»]
1VXTX-ray3.14O1-122[»]
1VY1X-ray3.68O1-122[»]
1VY3X-ray3.68O1-122[»]
1YL3X-ray5.50N52-121[»]
2HGJX-ray5.00N1-122[»]
2HGQX-ray5.50N1-122[»]
2HGUX-ray4.51N1-122[»]
2J01X-ray2.80O1-122[»]
2J03X-ray2.80O1-122[»]
2V47X-ray3.80O1-122[»]
2V49X-ray3.80O1-122[»]
2WDIX-ray3.30O1-122[»]
2WDJX-ray3.30O1-122[»]
2WDLX-ray3.50O1-122[»]
2WDNX-ray3.50O1-122[»]
2WH2X-ray3.45O1-122[»]
2WH4X-ray3.45O1-122[»]
2WRJX-ray3.60O1-122[»]
2WRLX-ray3.60O1-122[»]
2WROX-ray3.60O1-122[»]
2WRRX-ray3.60O1-122[»]
2X9SX-ray3.10O1-122[»]
2X9UX-ray3.10O1-122[»]
2XG0X-ray3.20O1-122[»]
2XG2X-ray3.20O1-122[»]
2XQEX-ray3.10O1-122[»]
2XTGelectron microscopy7.80O1-122[»]
2XUXelectron microscopy7.60O1-122[»]
2Y0VX-ray3.10O1-122[»]
2Y0XX-ray3.10O1-122[»]
2Y0ZX-ray3.10O1-122[»]
2Y11X-ray3.10O1-122[»]
2Y13X-ray3.10O1-122[»]
2Y15X-ray3.10O1-122[»]
2Y17X-ray3.10O1-122[»]
2Y19X-ray3.10O1-122[»]
3FINelectron microscopy6.40O1-122[»]
3HUXX-ray3.10O1-122[»]
3HUZX-ray3.10O1-122[»]
3I8FX-ray3.10N1-122[»]
3I8IX-ray3.10N1-122[»]
3I9CX-ray3.50N1-122[»]
3I9EX-ray3.50N1-122[»]
3KIRX-ray3.30O1-122[»]
3KITX-ray3.30O1-122[»]
3KIWX-ray3.60O1-122[»]
3KIYX-ray3.60O1-122[»]
3KNIX-ray3.00O1-122[»]
3KNKX-ray3.00O1-122[»]
3KNMX-ray3.45O1-122[»]
3KNOX-ray3.45O1-122[»]
3TVEX-ray3.10N1-122[»]
3TVHX-ray3.10N1-122[»]
3UXQX-ray3.20O1-122[»]
3UXRX-ray3.20O1-122[»]
3UYEX-ray3.00N1-122[»]
3UYGX-ray3.00N1-122[»]
3UZ1X-ray3.30N1-122[»]
3UZ2X-ray3.30N1-122[»]
3UZ8X-ray3.00N1-122[»]
3UZ9X-ray3.00N1-122[»]
3UZFX-ray3.30N1-122[»]
3UZHX-ray3.30N1-122[»]
3UZKX-ray3.30N1-122[»]
3UZNX-ray3.30N1-122[»]
3V23X-ray3.00O1-122[»]
3V25X-ray3.00O1-122[»]
3V27X-ray3.10O1-122[»]
3V29X-ray3.10O1-122[»]
3V2DX-ray2.70O1-122[»]
3V2FX-ray2.70O1-122[»]
3V6WX-ray3.90O1-122[»]
3V6XX-ray3.90O1-122[»]
3ZN9X-ray3.10O1-122[»]
3ZNEX-ray3.10O1-122[»]
3ZVPX-ray3.80O1-122[»]
4ABSX-ray3.10O1-122[»]
4B8GX-ray3.70O1-122[»]
4B8IX-ray3.70O1-122[»]
4BTDX-ray2.95O1-122[»]
4BYCX-ray3.35O1-122[»]
4BYEX-ray3.35O1-122[»]
4DHAX-ray3.20O1-122[»]
4DHCX-ray3.20O1-122[»]
4EJBX-ray3.52O1-122[»]
4EJCX-ray3.52O1-122[»]
4G5LX-ray3.30N1-122[»]
4G5NX-ray3.30N1-122[»]
4G5UX-ray3.10N1-122[»]
4G5WX-ray3.10N1-122[»]
4JUXX-ray2.86O1-122[»]
4K0MX-ray3.30O1-122[»]
4K0QX-ray3.30O1-122[»]
4KX0X-ray3.44O1-122[»]
4KX2X-ray3.44O1-122[»]
4NVVX-ray3.00O1-122[»]
4NVXX-ray3.00O1-122[»]
4NVZX-ray3.10O1-122[»]
4NW1X-ray3.10O1-122[»]
4QCNX-ray2.60O1-122[»]
4QCPX-ray2.60O1-122[»]
4QCRX-ray2.55O1-122[»]
4QCTX-ray2.55O1-122[»]
4QCVX-ray2.90O1-122[»]
4QCXX-ray2.90O1-122[»]
4QCZX-ray2.80O1-122[»]
4QD1X-ray2.80O1-122[»]
ProteinModelPortaliQ5SHP8.
SMRiQ5SHP8. Positions 1-122.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHP8.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L14P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0093.
HOGENOMiHOG000183702.
KOiK02874.
OMAiTPNMPVK.
OrthoDBiEOG6GBMJ6.
PhylomeDBiQ5SHP8.

Family and domain databases

Gene3Di2.40.150.20. 1 hit.
HAMAPiMF_01367. Ribosomal_L14.
InterProiIPR005745. Ribosomal_L14_bac-type.
IPR019972. Ribosomal_L14_CS.
IPR023571. Ribosomal_L14_dom.
IPR000218. Ribosomal_L14b/L23e.
[Graphical view]
PANTHERiPTHR11761. PTHR11761. 1 hit.
PfamiPF00238. Ribosomal_L14. 1 hit.
[Graphical view]
SUPFAMiSSF50193. SSF50193. 1 hit.
TIGRFAMsiTIGR01067. rplN_bact. 1 hit.
PROSITEiPS00049. RIBOSOMAL_L14. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SHP8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MIQPQTYLEV ADNTGARKIM CIRVLKGSNA KYATVGDVIV ASVKEAIPRG
60 70 80 90 100
AVKEGDVVKA VVVRTKKEIK RPDGSAIRFD DNAAVIINNQ LEPRGTRVFG
110 120
PVARELREKG FMKIVSLAPE VL
Length:122
Mass (Da):13,303
Last modified:December 21, 2004 - v1
Checksum:i9305B92EBAAB9B6C
GO

Mass spectrometryi

Molecular mass is 13304 Da from positions 1 - 122. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71505.1.
RefSeqiYP_144948.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71505; BAD71505; BAD71505.
GeneIDi3168727.
KEGGittj:TTHA1682.
PATRICi23958319. VBITheThe93045_1652.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71505.1 .
RefSeqi YP_144948.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1GIY X-ray 5.50 N 57-121 [» ]
1VVM X-ray 3.22 O 1-122 [» ]
1VVO X-ray 3.22 O 1-122 [» ]
1VVQ X-ray 3.90 O 1-122 [» ]
1VVS X-ray 3.90 O 1-122 [» ]
1VVU X-ray 3.90 O 1-122 [» ]
1VVW X-ray 3.90 O 1-122 [» ]
1VVY X-ray 3.92 O 1-122 [» ]
1VW0 X-ray 3.92 O 1-122 [» ]
1VX9 X-ray 2.94 O 1-122 [» ]
1VXJ X-ray 2.94 O 1-122 [» ]
1VXL X-ray 3.48 O 1-122 [» ]
1VXN X-ray 3.48 O 1-122 [» ]
1VXQ X-ray 3.14 O 1-122 [» ]
1VXT X-ray 3.14 O 1-122 [» ]
1VY1 X-ray 3.68 O 1-122 [» ]
1VY3 X-ray 3.68 O 1-122 [» ]
1YL3 X-ray 5.50 N 52-121 [» ]
2HGJ X-ray 5.00 N 1-122 [» ]
2HGQ X-ray 5.50 N 1-122 [» ]
2HGU X-ray 4.51 N 1-122 [» ]
2J01 X-ray 2.80 O 1-122 [» ]
2J03 X-ray 2.80 O 1-122 [» ]
2V47 X-ray 3.80 O 1-122 [» ]
2V49 X-ray 3.80 O 1-122 [» ]
2WDI X-ray 3.30 O 1-122 [» ]
2WDJ X-ray 3.30 O 1-122 [» ]
2WDL X-ray 3.50 O 1-122 [» ]
2WDN X-ray 3.50 O 1-122 [» ]
2WH2 X-ray 3.45 O 1-122 [» ]
2WH4 X-ray 3.45 O 1-122 [» ]
2WRJ X-ray 3.60 O 1-122 [» ]
2WRL X-ray 3.60 O 1-122 [» ]
2WRO X-ray 3.60 O 1-122 [» ]
2WRR X-ray 3.60 O 1-122 [» ]
2X9S X-ray 3.10 O 1-122 [» ]
2X9U X-ray 3.10 O 1-122 [» ]
2XG0 X-ray 3.20 O 1-122 [» ]
2XG2 X-ray 3.20 O 1-122 [» ]
2XQE X-ray 3.10 O 1-122 [» ]
2XTG electron microscopy 7.80 O 1-122 [» ]
2XUX electron microscopy 7.60 O 1-122 [» ]
2Y0V X-ray 3.10 O 1-122 [» ]
2Y0X X-ray 3.10 O 1-122 [» ]
2Y0Z X-ray 3.10 O 1-122 [» ]
2Y11 X-ray 3.10 O 1-122 [» ]
2Y13 X-ray 3.10 O 1-122 [» ]
2Y15 X-ray 3.10 O 1-122 [» ]
2Y17 X-ray 3.10 O 1-122 [» ]
2Y19 X-ray 3.10 O 1-122 [» ]
3FIN electron microscopy 6.40 O 1-122 [» ]
3HUX X-ray 3.10 O 1-122 [» ]
3HUZ X-ray 3.10 O 1-122 [» ]
3I8F X-ray 3.10 N 1-122 [» ]
3I8I X-ray 3.10 N 1-122 [» ]
3I9C X-ray 3.50 N 1-122 [» ]
3I9E X-ray 3.50 N 1-122 [» ]
3KIR X-ray 3.30 O 1-122 [» ]
3KIT X-ray 3.30 O 1-122 [» ]
3KIW X-ray 3.60 O 1-122 [» ]
3KIY X-ray 3.60 O 1-122 [» ]
3KNI X-ray 3.00 O 1-122 [» ]
3KNK X-ray 3.00 O 1-122 [» ]
3KNM X-ray 3.45 O 1-122 [» ]
3KNO X-ray 3.45 O 1-122 [» ]
3TVE X-ray 3.10 N 1-122 [» ]
3TVH X-ray 3.10 N 1-122 [» ]
3UXQ X-ray 3.20 O 1-122 [» ]
3UXR X-ray 3.20 O 1-122 [» ]
3UYE X-ray 3.00 N 1-122 [» ]
3UYG X-ray 3.00 N 1-122 [» ]
3UZ1 X-ray 3.30 N 1-122 [» ]
3UZ2 X-ray 3.30 N 1-122 [» ]
3UZ8 X-ray 3.00 N 1-122 [» ]
3UZ9 X-ray 3.00 N 1-122 [» ]
3UZF X-ray 3.30 N 1-122 [» ]
3UZH X-ray 3.30 N 1-122 [» ]
3UZK X-ray 3.30 N 1-122 [» ]
3UZN X-ray 3.30 N 1-122 [» ]
3V23 X-ray 3.00 O 1-122 [» ]
3V25 X-ray 3.00 O 1-122 [» ]
3V27 X-ray 3.10 O 1-122 [» ]
3V29 X-ray 3.10 O 1-122 [» ]
3V2D X-ray 2.70 O 1-122 [» ]
3V2F X-ray 2.70 O 1-122 [» ]
3V6W X-ray 3.90 O 1-122 [» ]
3V6X X-ray 3.90 O 1-122 [» ]
3ZN9 X-ray 3.10 O 1-122 [» ]
3ZNE X-ray 3.10 O 1-122 [» ]
3ZVP X-ray 3.80 O 1-122 [» ]
4ABS X-ray 3.10 O 1-122 [» ]
4B8G X-ray 3.70 O 1-122 [» ]
4B8I X-ray 3.70 O 1-122 [» ]
4BTD X-ray 2.95 O 1-122 [» ]
4BYC X-ray 3.35 O 1-122 [» ]
4BYE X-ray 3.35 O 1-122 [» ]
4DHA X-ray 3.20 O 1-122 [» ]
4DHC X-ray 3.20 O 1-122 [» ]
4EJB X-ray 3.52 O 1-122 [» ]
4EJC X-ray 3.52 O 1-122 [» ]
4G5L X-ray 3.30 N 1-122 [» ]
4G5N X-ray 3.30 N 1-122 [» ]
4G5U X-ray 3.10 N 1-122 [» ]
4G5W X-ray 3.10 N 1-122 [» ]
4JUX X-ray 2.86 O 1-122 [» ]
4K0M X-ray 3.30 O 1-122 [» ]
4K0Q X-ray 3.30 O 1-122 [» ]
4KX0 X-ray 3.44 O 1-122 [» ]
4KX2 X-ray 3.44 O 1-122 [» ]
4NVV X-ray 3.00 O 1-122 [» ]
4NVX X-ray 3.00 O 1-122 [» ]
4NVZ X-ray 3.10 O 1-122 [» ]
4NW1 X-ray 3.10 O 1-122 [» ]
4QCN X-ray 2.60 O 1-122 [» ]
4QCP X-ray 2.60 O 1-122 [» ]
4QCR X-ray 2.55 O 1-122 [» ]
4QCT X-ray 2.55 O 1-122 [» ]
4QCV X-ray 2.90 O 1-122 [» ]
4QCX X-ray 2.90 O 1-122 [» ]
4QCZ X-ray 2.80 O 1-122 [» ]
4QD1 X-ray 2.80 O 1-122 [» ]
ProteinModelPortali Q5SHP8.
SMRi Q5SHP8. Positions 1-122.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1682.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71505 ; BAD71505 ; BAD71505 .
GeneIDi 3168727.
KEGGi ttj:TTHA1682.
PATRICi 23958319. VBITheThe93045_1652.

Phylogenomic databases

eggNOGi COG0093.
HOGENOMi HOG000183702.
KOi K02874.
OMAi TPNMPVK.
OrthoDBi EOG6GBMJ6.
PhylomeDBi Q5SHP8.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1721-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5SHP8.

Family and domain databases

Gene3Di 2.40.150.20. 1 hit.
HAMAPi MF_01367. Ribosomal_L14.
InterProi IPR005745. Ribosomal_L14_bac-type.
IPR019972. Ribosomal_L14_CS.
IPR023571. Ribosomal_L14_dom.
IPR000218. Ribosomal_L14b/L23e.
[Graphical view ]
PANTHERi PTHR11761. PTHR11761. 1 hit.
Pfami PF00238. Ribosomal_L14. 1 hit.
[Graphical view ]
SUPFAMi SSF50193. SSF50193. 1 hit.
TIGRFAMsi TIGR01067. rplN_bact. 1 hit.
PROSITEi PS00049. RIBOSOMAL_L14. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-15.
  3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  4. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  5. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME, INTERSUBUNIT BRIDGE FORMATION.

Entry informationi

Entry nameiRL14_THET8
AccessioniPrimary (citable) accession number: Q5SHP8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: October 29, 2014
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3