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Q5SHP6

- RL29_THET8

UniProt

Q5SHP6 - RL29_THET8

Protein

50S ribosomal protein L29

Gene

rpmC

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-1723-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L29
    Gene namesi
    Name:rpmC
    Ordered Locus Names:TTHA1684
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 727250S ribosomal protein L29PRO_0000130483Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.

    Protein-protein interaction databases

    STRINGi300852.TTHA1684.

    Structurei

    Secondary structure

    1
    72
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi3 – 1513
    Helixi18 – 4023
    Turni42 – 443
    Helixi45 – 473
    Helixi49 – 6921

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1GIYX-ray5.50W1-72[»]
    1YL3X-ray5.50W1-72[»]
    2HGJX-ray5.0017-72[»]
    2HGQX-ray5.5011-72[»]
    2HGUX-ray4.5111-72[»]
    2J01X-ray2.8021-72[»]
    2J03X-ray2.8021-72[»]
    2V47X-ray3.8021-72[»]
    2V49X-ray3.8021-72[»]
    2WDIX-ray3.3021-72[»]
    2WDJX-ray3.3021-72[»]
    2WDLX-ray3.5021-72[»]
    2WDNX-ray3.5021-72[»]
    2WH2X-ray3.4521-72[»]
    2WH4X-ray3.4521-72[»]
    2WRJX-ray3.6021-72[»]
    2WRLX-ray3.6021-72[»]
    2WROX-ray3.6021-72[»]
    2WRRX-ray3.6021-72[»]
    2X9SX-ray3.1021-72[»]
    2X9UX-ray3.1021-72[»]
    2XG0X-ray3.2021-72[»]
    2XG2X-ray3.2021-72[»]
    2XQEX-ray3.1021-72[»]
    2XTGelectron microscopy7.8021-72[»]
    2XUXelectron microscopy7.6021-72[»]
    2Y0VX-ray3.1021-72[»]
    2Y0XX-ray3.1021-72[»]
    2Y0ZX-ray3.1021-72[»]
    2Y11X-ray3.1021-72[»]
    2Y13X-ray3.1021-72[»]
    2Y15X-ray3.1021-72[»]
    2Y17X-ray3.1021-72[»]
    2Y19X-ray3.1021-72[»]
    3FINelectron microscopy6.40212-62[»]
    3HUXX-ray3.1021-72[»]
    3HUZX-ray3.1021-72[»]
    3I8FX-ray3.10W1-72[»]
    3I8IX-ray3.10W1-72[»]
    3I9CX-ray3.50W1-72[»]
    3I9EX-ray3.50W1-72[»]
    3KIRX-ray3.3021-72[»]
    3KITX-ray3.3021-72[»]
    3KIWX-ray3.6021-72[»]
    3KIYX-ray3.6021-72[»]
    3KNIX-ray3.0021-72[»]
    3KNKX-ray3.0021-72[»]
    3KNMX-ray3.4521-72[»]
    3KNOX-ray3.4521-72[»]
    3OH5X-ray3.0021-72[»]
    3OH7X-ray3.0021-72[»]
    3OHJX-ray3.0021-72[»]
    3OHKX-ray3.0021-72[»]
    3OHZX-ray3.0021-72[»]
    3OI1X-ray3.0021-72[»]
    3OI3X-ray3.1021-72[»]
    3OI5X-ray3.1021-72[»]
    3TVEX-ray3.10W4-69[»]
    3TVHX-ray3.10W4-72[»]
    3UXQX-ray3.2021-72[»]
    3UXRX-ray3.2021-72[»]
    3UYEX-ray3.00W1-72[»]
    3UYGX-ray3.00W1-72[»]
    3UZ1X-ray3.30W1-72[»]
    3UZ2X-ray3.30W1-72[»]
    3UZ8X-ray3.00W1-72[»]
    3UZ9X-ray3.00W1-72[»]
    3UZFX-ray3.30W1-72[»]
    3UZHX-ray3.30W1-72[»]
    3UZKX-ray3.30W1-72[»]
    3UZNX-ray3.30W1-72[»]
    3V23X-ray3.0021-72[»]
    3V25X-ray3.0021-72[»]
    3V27X-ray3.1021-72[»]
    3V29X-ray3.1021-72[»]
    3V2DX-ray2.7021-72[»]
    3V2FX-ray2.7021-72[»]
    3V6WX-ray3.9021-72[»]
    3V6XX-ray3.9021-72[»]
    3ZN9X-ray3.1021-72[»]
    3ZNEX-ray3.1021-72[»]
    3ZVPX-ray3.8021-72[»]
    4ABSX-ray3.1021-72[»]
    4B8GX-ray3.7021-72[»]
    4B8IX-ray3.7021-72[»]
    4BTDX-ray2.9522-72[»]
    4BYCX-ray3.3521-72[»]
    4BYEX-ray3.3521-72[»]
    4DHAX-ray3.2021-72[»]
    4DHCX-ray3.2021-72[»]
    4EJBX-ray3.5221-72[»]
    4EJCX-ray3.5221-72[»]
    4G5LX-ray3.30W1-72[»]
    4G5NX-ray3.30W1-72[»]
    4G5UX-ray3.10W1-72[»]
    4G5WX-ray3.10W1-72[»]
    4JUXX-ray2.8621-72[»]
    4K0MX-ray3.3022-72[»]
    4K0QX-ray3.3022-72[»]
    4NVVX-ray3.0021-72[»]
    4NVXX-ray3.0021-72[»]
    4NVZX-ray3.1021-72[»]
    4NW1X-ray3.1021-72[»]
    ProteinModelPortaliQ5SHP6.
    SMRiQ5SHP6. Positions 1-62.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ5SHP6.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L29P family.Curated

    Phylogenomic databases

    eggNOGideiNOG05431.
    HOGENOMiHOG000248755.
    KOiK02904.
    OMAiGSLDQTH.
    OrthoDBiEOG6VTK8Z.

    Family and domain databases

    Gene3Di1.10.287.310. 1 hit.
    HAMAPiMF_00374. Ribosomal_L29.
    InterProiIPR001854. Ribosomal_L29.
    IPR018254. Ribosomal_L29_CS.
    [Graphical view]
    PfamiPF00831. Ribosomal_L29. 1 hit.
    [Graphical view]
    SUPFAMiSSF46561. SSF46561. 1 hit.
    TIGRFAMsiTIGR00012. L29. 1 hit.
    PROSITEiPS00579. RIBOSOMAL_L29. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5SHP6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLSEVRKQL EEARKLSPVE LEKLVREKKR ELMELRFQAS IGQLSQNHKI   50
    RDLKRQIARL LTVLNEKRRQ NA 72
    Length:72
    Mass (Da):8,650
    Last modified:December 21, 2004 - v1
    Checksum:iC113B72000929584
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti6 – 61V → M AA sequence (PubMed:9825301)Curated
    Sequence conflicti19 – 191V → M AA sequence (PubMed:9825301)Curated

    Mass spectrometryi

    Molecular mass is 8652 Da from positions 1 - 72. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD71507.1.
    RefSeqiYP_144950.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD71507; BAD71507; BAD71507.
    GeneIDi3169832.
    KEGGittj:TTHA1684.
    PATRICi23958323. VBITheThe93045_1654.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008226 Genomic DNA. Translation: BAD71507.1 .
    RefSeqi YP_144950.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1GIY X-ray 5.50 W 1-72 [» ]
    1YL3 X-ray 5.50 W 1-72 [» ]
    2HGJ X-ray 5.00 1 7-72 [» ]
    2HGQ X-ray 5.50 1 1-72 [» ]
    2HGU X-ray 4.51 1 1-72 [» ]
    2J01 X-ray 2.80 2 1-72 [» ]
    2J03 X-ray 2.80 2 1-72 [» ]
    2V47 X-ray 3.80 2 1-72 [» ]
    2V49 X-ray 3.80 2 1-72 [» ]
    2WDI X-ray 3.30 2 1-72 [» ]
    2WDJ X-ray 3.30 2 1-72 [» ]
    2WDL X-ray 3.50 2 1-72 [» ]
    2WDN X-ray 3.50 2 1-72 [» ]
    2WH2 X-ray 3.45 2 1-72 [» ]
    2WH4 X-ray 3.45 2 1-72 [» ]
    2WRJ X-ray 3.60 2 1-72 [» ]
    2WRL X-ray 3.60 2 1-72 [» ]
    2WRO X-ray 3.60 2 1-72 [» ]
    2WRR X-ray 3.60 2 1-72 [» ]
    2X9S X-ray 3.10 2 1-72 [» ]
    2X9U X-ray 3.10 2 1-72 [» ]
    2XG0 X-ray 3.20 2 1-72 [» ]
    2XG2 X-ray 3.20 2 1-72 [» ]
    2XQE X-ray 3.10 2 1-72 [» ]
    2XTG electron microscopy 7.80 2 1-72 [» ]
    2XUX electron microscopy 7.60 2 1-72 [» ]
    2Y0V X-ray 3.10 2 1-72 [» ]
    2Y0X X-ray 3.10 2 1-72 [» ]
    2Y0Z X-ray 3.10 2 1-72 [» ]
    2Y11 X-ray 3.10 2 1-72 [» ]
    2Y13 X-ray 3.10 2 1-72 [» ]
    2Y15 X-ray 3.10 2 1-72 [» ]
    2Y17 X-ray 3.10 2 1-72 [» ]
    2Y19 X-ray 3.10 2 1-72 [» ]
    3FIN electron microscopy 6.40 2 12-62 [» ]
    3HUX X-ray 3.10 2 1-72 [» ]
    3HUZ X-ray 3.10 2 1-72 [» ]
    3I8F X-ray 3.10 W 1-72 [» ]
    3I8I X-ray 3.10 W 1-72 [» ]
    3I9C X-ray 3.50 W 1-72 [» ]
    3I9E X-ray 3.50 W 1-72 [» ]
    3KIR X-ray 3.30 2 1-72 [» ]
    3KIT X-ray 3.30 2 1-72 [» ]
    3KIW X-ray 3.60 2 1-72 [» ]
    3KIY X-ray 3.60 2 1-72 [» ]
    3KNI X-ray 3.00 2 1-72 [» ]
    3KNK X-ray 3.00 2 1-72 [» ]
    3KNM X-ray 3.45 2 1-72 [» ]
    3KNO X-ray 3.45 2 1-72 [» ]
    3OH5 X-ray 3.00 2 1-72 [» ]
    3OH7 X-ray 3.00 2 1-72 [» ]
    3OHJ X-ray 3.00 2 1-72 [» ]
    3OHK X-ray 3.00 2 1-72 [» ]
    3OHZ X-ray 3.00 2 1-72 [» ]
    3OI1 X-ray 3.00 2 1-72 [» ]
    3OI3 X-ray 3.10 2 1-72 [» ]
    3OI5 X-ray 3.10 2 1-72 [» ]
    3TVE X-ray 3.10 W 4-69 [» ]
    3TVH X-ray 3.10 W 4-72 [» ]
    3UXQ X-ray 3.20 2 1-72 [» ]
    3UXR X-ray 3.20 2 1-72 [» ]
    3UYE X-ray 3.00 W 1-72 [» ]
    3UYG X-ray 3.00 W 1-72 [» ]
    3UZ1 X-ray 3.30 W 1-72 [» ]
    3UZ2 X-ray 3.30 W 1-72 [» ]
    3UZ8 X-ray 3.00 W 1-72 [» ]
    3UZ9 X-ray 3.00 W 1-72 [» ]
    3UZF X-ray 3.30 W 1-72 [» ]
    3UZH X-ray 3.30 W 1-72 [» ]
    3UZK X-ray 3.30 W 1-72 [» ]
    3UZN X-ray 3.30 W 1-72 [» ]
    3V23 X-ray 3.00 2 1-72 [» ]
    3V25 X-ray 3.00 2 1-72 [» ]
    3V27 X-ray 3.10 2 1-72 [» ]
    3V29 X-ray 3.10 2 1-72 [» ]
    3V2D X-ray 2.70 2 1-72 [» ]
    3V2F X-ray 2.70 2 1-72 [» ]
    3V6W X-ray 3.90 2 1-72 [» ]
    3V6X X-ray 3.90 2 1-72 [» ]
    3ZN9 X-ray 3.10 2 1-72 [» ]
    3ZNE X-ray 3.10 2 1-72 [» ]
    3ZVP X-ray 3.80 2 1-72 [» ]
    4ABS X-ray 3.10 2 1-72 [» ]
    4B8G X-ray 3.70 2 1-72 [» ]
    4B8I X-ray 3.70 2 1-72 [» ]
    4BTD X-ray 2.95 2 2-72 [» ]
    4BYC X-ray 3.35 2 1-72 [» ]
    4BYE X-ray 3.35 2 1-72 [» ]
    4DHA X-ray 3.20 2 1-72 [» ]
    4DHC X-ray 3.20 2 1-72 [» ]
    4EJB X-ray 3.52 2 1-72 [» ]
    4EJC X-ray 3.52 2 1-72 [» ]
    4G5L X-ray 3.30 W 1-72 [» ]
    4G5N X-ray 3.30 W 1-72 [» ]
    4G5U X-ray 3.10 W 1-72 [» ]
    4G5W X-ray 3.10 W 1-72 [» ]
    4JUX X-ray 2.86 2 1-72 [» ]
    4K0M X-ray 3.30 2 2-72 [» ]
    4K0Q X-ray 3.30 2 2-72 [» ]
    4NVV X-ray 3.00 2 1-72 [» ]
    4NVX X-ray 3.00 2 1-72 [» ]
    4NVZ X-ray 3.10 2 1-72 [» ]
    4NW1 X-ray 3.10 2 1-72 [» ]
    ProteinModelPortali Q5SHP6.
    SMRi Q5SHP6. Positions 1-62.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA1684.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD71507 ; BAD71507 ; BAD71507 .
    GeneIDi 3169832.
    KEGGi ttj:TTHA1684.
    PATRICi 23958323. VBITheThe93045_1654.

    Phylogenomic databases

    eggNOGi deiNOG05431.
    HOGENOMi HOG000248755.
    KOi K02904.
    OMAi GSLDQTH.
    OrthoDBi EOG6VTK8Z.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-1723-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q5SHP6.

    Family and domain databases

    Gene3Di 1.10.287.310. 1 hit.
    HAMAPi MF_00374. Ribosomal_L29.
    InterProi IPR001854. Ribosomal_L29.
    IPR018254. Ribosomal_L29_CS.
    [Graphical view ]
    Pfami PF00831. Ribosomal_L29. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46561. SSF46561. 1 hit.
    TIGRFAMsi TIGR00012. L29. 1 hit.
    PROSITEi PS00579. RIBOSOMAL_L29. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    2. "Systematic, computer-assisted optimisation of the isolation of Thermus thermophilus 50S ribosomal proteins by reversed-phase high-performance liquid chromatography."
      Boysen R.I., Erdmann V.A., Hearn M.T.
      J. Biochem. Biophys. Methods 37:69-89(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 1-59.
    3. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
      Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
      Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 1-20.
    4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
    5. "The path of messenger RNA through the ribosome."
      Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
      Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
    6. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

    Entry informationi

    Entry nameiRL29_THET8
    AccessioniPrimary (citable) accession number: Q5SHP6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 29, 2005
    Last sequence update: December 21, 2004
    Last modified: October 1, 2014
    This is version 78 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3