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Q5SHP6

- RL29_THET8

UniProt

Q5SHP6 - RL29_THET8

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Protein

50S ribosomal protein L29

Gene

rpmC

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1723-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L29
Gene namesi
Name:rpmC
Ordered Locus Names:TTHA1684
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 727250S ribosomal protein L29PRO_0000130483Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1684.

Structurei

Secondary structure

1
72
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 1513
Helixi18 – 4023
Turni42 – 443
Helixi45 – 473
Helixi49 – 6921

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50W1-72[»]
1VVMX-ray3.2221-72[»]
1VVOX-ray3.2221-72[»]
1VVQX-ray3.9021-72[»]
1VVSX-ray3.9021-72[»]
1VVUX-ray3.9021-72[»]
1VVWX-ray3.9021-72[»]
1VVYX-ray3.9221-72[»]
1VW0X-ray3.9221-72[»]
1VX9X-ray2.9421-72[»]
1VXJX-ray2.9421-72[»]
1VXLX-ray3.4821-72[»]
1VXNX-ray3.4821-72[»]
1VXQX-ray3.1421-72[»]
1VXTX-ray3.1421-72[»]
1VY1X-ray3.6821-72[»]
1VY3X-ray3.6821-72[»]
1YL3X-ray5.50W1-72[»]
2HGJX-ray5.0017-72[»]
2HGQX-ray5.5011-72[»]
2HGUX-ray4.5111-72[»]
2J01X-ray2.8021-72[»]
2J03X-ray2.8021-72[»]
2V47X-ray3.8021-72[»]
2V49X-ray3.8021-72[»]
2WDIX-ray3.3021-72[»]
2WDJX-ray3.3021-72[»]
2WDLX-ray3.5021-72[»]
2WDNX-ray3.5021-72[»]
2WH2X-ray3.4521-72[»]
2WH4X-ray3.4521-72[»]
2WRJX-ray3.6021-72[»]
2WRLX-ray3.6021-72[»]
2WROX-ray3.6021-72[»]
2WRRX-ray3.6021-72[»]
2X9SX-ray3.1021-72[»]
2X9UX-ray3.1021-72[»]
2XG0X-ray3.2021-72[»]
2XG2X-ray3.2021-72[»]
2XQEX-ray3.1021-72[»]
2XTGelectron microscopy7.8021-72[»]
2XUXelectron microscopy7.6021-72[»]
2Y0VX-ray3.1021-72[»]
2Y0XX-ray3.1021-72[»]
2Y0ZX-ray3.1021-72[»]
2Y11X-ray3.1021-72[»]
2Y13X-ray3.1021-72[»]
2Y15X-ray3.1021-72[»]
2Y17X-ray3.1021-72[»]
2Y19X-ray3.1021-72[»]
3FINelectron microscopy6.40212-62[»]
3HUXX-ray3.1021-72[»]
3HUZX-ray3.1021-72[»]
3I8FX-ray3.10W1-72[»]
3I8IX-ray3.10W1-72[»]
3I9CX-ray3.50W1-72[»]
3I9EX-ray3.50W1-72[»]
3KIRX-ray3.3021-72[»]
3KITX-ray3.3021-72[»]
3KIWX-ray3.6021-72[»]
3KIYX-ray3.6021-72[»]
3KNIX-ray3.0021-72[»]
3KNKX-ray3.0021-72[»]
3KNMX-ray3.4521-72[»]
3KNOX-ray3.4521-72[»]
3OH5X-ray3.0021-72[»]
3OH7X-ray3.0021-72[»]
3OHJX-ray3.0021-72[»]
3OHKX-ray3.0021-72[»]
3OHZX-ray3.0021-72[»]
3OI1X-ray3.0021-72[»]
3OI3X-ray3.1021-72[»]
3OI5X-ray3.1021-72[»]
3TVEX-ray3.10W4-69[»]
3TVHX-ray3.10W4-72[»]
3UXQX-ray3.2021-72[»]
3UXRX-ray3.2021-72[»]
3UYEX-ray3.00W1-72[»]
3UYGX-ray3.00W1-72[»]
3UZ1X-ray3.30W1-72[»]
3UZ2X-ray3.30W1-72[»]
3UZ8X-ray3.00W1-72[»]
3UZ9X-ray3.00W1-72[»]
3UZFX-ray3.30W1-72[»]
3UZHX-ray3.30W1-72[»]
3UZKX-ray3.30W1-72[»]
3UZNX-ray3.30W1-72[»]
3V23X-ray3.0021-72[»]
3V25X-ray3.0021-72[»]
3V27X-ray3.1021-72[»]
3V29X-ray3.1021-72[»]
3V2DX-ray2.7021-72[»]
3V2FX-ray2.7021-72[»]
3V6WX-ray3.9021-72[»]
3V6XX-ray3.9021-72[»]
3ZN9X-ray3.1021-72[»]
3ZNEX-ray3.1021-72[»]
3ZVPX-ray3.8021-72[»]
4ABSX-ray3.1021-72[»]
4B8GX-ray3.7021-72[»]
4B8IX-ray3.7021-72[»]
4BTDX-ray2.9522-72[»]
4BYCX-ray3.3521-72[»]
4BYEX-ray3.3521-72[»]
4DHAX-ray3.2021-72[»]
4DHCX-ray3.2021-72[»]
4EJBX-ray3.5221-72[»]
4EJCX-ray3.5221-72[»]
4G5LX-ray3.30W1-72[»]
4G5NX-ray3.30W1-72[»]
4G5UX-ray3.10W1-72[»]
4G5WX-ray3.10W1-72[»]
4JUXX-ray2.8621-72[»]
4K0MX-ray3.3022-72[»]
4K0QX-ray3.3022-72[»]
4KX0X-ray3.4421-72[»]
4KX2X-ray3.4421-72[»]
4NVVX-ray3.0021-72[»]
4NVXX-ray3.0021-72[»]
4NVZX-ray3.1021-72[»]
4NW1X-ray3.1021-72[»]
4QCNX-ray2.6021-72[»]
4QCPX-ray2.6021-72[»]
4QCRX-ray2.5521-72[»]
4QCTX-ray2.5521-72[»]
4QCVX-ray2.9021-72[»]
4QCXX-ray2.9021-72[»]
4QCZX-ray2.8021-72[»]
4QD1X-ray2.8021-72[»]
ProteinModelPortaliQ5SHP6.
SMRiQ5SHP6. Positions 1-62.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHP6.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L29P family.Curated

Phylogenomic databases

eggNOGideiNOG05431.
HOGENOMiHOG000248755.
KOiK02904.
OMAiGSLDQTH.
OrthoDBiEOG6VTK8Z.

Family and domain databases

Gene3Di1.10.287.310. 1 hit.
HAMAPiMF_00374. Ribosomal_L29.
InterProiIPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view]
PfamiPF00831. Ribosomal_L29. 1 hit.
[Graphical view]
SUPFAMiSSF46561. SSF46561. 1 hit.
TIGRFAMsiTIGR00012. L29. 1 hit.
PROSITEiPS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SHP6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKLSEVRKQL EEARKLSPVE LEKLVREKKR ELMELRFQAS IGQLSQNHKI
60 70
RDLKRQIARL LTVLNEKRRQ NA
Length:72
Mass (Da):8,650
Last modified:December 21, 2004 - v1
Checksum:iC113B72000929584
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti6 – 61V → M AA sequence (PubMed:9825301)Curated
Sequence conflicti19 – 191V → M AA sequence (PubMed:9825301)Curated

Mass spectrometryi

Molecular mass is 8652 Da from positions 1 - 72. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71507.1.
RefSeqiYP_144950.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71507; BAD71507; BAD71507.
GeneIDi3169832.
KEGGittj:TTHA1684.
PATRICi23958323. VBITheThe93045_1654.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71507.1 .
RefSeqi YP_144950.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1GIY X-ray 5.50 W 1-72 [» ]
1VVM X-ray 3.22 2 1-72 [» ]
1VVO X-ray 3.22 2 1-72 [» ]
1VVQ X-ray 3.90 2 1-72 [» ]
1VVS X-ray 3.90 2 1-72 [» ]
1VVU X-ray 3.90 2 1-72 [» ]
1VVW X-ray 3.90 2 1-72 [» ]
1VVY X-ray 3.92 2 1-72 [» ]
1VW0 X-ray 3.92 2 1-72 [» ]
1VX9 X-ray 2.94 2 1-72 [» ]
1VXJ X-ray 2.94 2 1-72 [» ]
1VXL X-ray 3.48 2 1-72 [» ]
1VXN X-ray 3.48 2 1-72 [» ]
1VXQ X-ray 3.14 2 1-72 [» ]
1VXT X-ray 3.14 2 1-72 [» ]
1VY1 X-ray 3.68 2 1-72 [» ]
1VY3 X-ray 3.68 2 1-72 [» ]
1YL3 X-ray 5.50 W 1-72 [» ]
2HGJ X-ray 5.00 1 7-72 [» ]
2HGQ X-ray 5.50 1 1-72 [» ]
2HGU X-ray 4.51 1 1-72 [» ]
2J01 X-ray 2.80 2 1-72 [» ]
2J03 X-ray 2.80 2 1-72 [» ]
2V47 X-ray 3.80 2 1-72 [» ]
2V49 X-ray 3.80 2 1-72 [» ]
2WDI X-ray 3.30 2 1-72 [» ]
2WDJ X-ray 3.30 2 1-72 [» ]
2WDL X-ray 3.50 2 1-72 [» ]
2WDN X-ray 3.50 2 1-72 [» ]
2WH2 X-ray 3.45 2 1-72 [» ]
2WH4 X-ray 3.45 2 1-72 [» ]
2WRJ X-ray 3.60 2 1-72 [» ]
2WRL X-ray 3.60 2 1-72 [» ]
2WRO X-ray 3.60 2 1-72 [» ]
2WRR X-ray 3.60 2 1-72 [» ]
2X9S X-ray 3.10 2 1-72 [» ]
2X9U X-ray 3.10 2 1-72 [» ]
2XG0 X-ray 3.20 2 1-72 [» ]
2XG2 X-ray 3.20 2 1-72 [» ]
2XQE X-ray 3.10 2 1-72 [» ]
2XTG electron microscopy 7.80 2 1-72 [» ]
2XUX electron microscopy 7.60 2 1-72 [» ]
2Y0V X-ray 3.10 2 1-72 [» ]
2Y0X X-ray 3.10 2 1-72 [» ]
2Y0Z X-ray 3.10 2 1-72 [» ]
2Y11 X-ray 3.10 2 1-72 [» ]
2Y13 X-ray 3.10 2 1-72 [» ]
2Y15 X-ray 3.10 2 1-72 [» ]
2Y17 X-ray 3.10 2 1-72 [» ]
2Y19 X-ray 3.10 2 1-72 [» ]
3FIN electron microscopy 6.40 2 12-62 [» ]
3HUX X-ray 3.10 2 1-72 [» ]
3HUZ X-ray 3.10 2 1-72 [» ]
3I8F X-ray 3.10 W 1-72 [» ]
3I8I X-ray 3.10 W 1-72 [» ]
3I9C X-ray 3.50 W 1-72 [» ]
3I9E X-ray 3.50 W 1-72 [» ]
3KIR X-ray 3.30 2 1-72 [» ]
3KIT X-ray 3.30 2 1-72 [» ]
3KIW X-ray 3.60 2 1-72 [» ]
3KIY X-ray 3.60 2 1-72 [» ]
3KNI X-ray 3.00 2 1-72 [» ]
3KNK X-ray 3.00 2 1-72 [» ]
3KNM X-ray 3.45 2 1-72 [» ]
3KNO X-ray 3.45 2 1-72 [» ]
3OH5 X-ray 3.00 2 1-72 [» ]
3OH7 X-ray 3.00 2 1-72 [» ]
3OHJ X-ray 3.00 2 1-72 [» ]
3OHK X-ray 3.00 2 1-72 [» ]
3OHZ X-ray 3.00 2 1-72 [» ]
3OI1 X-ray 3.00 2 1-72 [» ]
3OI3 X-ray 3.10 2 1-72 [» ]
3OI5 X-ray 3.10 2 1-72 [» ]
3TVE X-ray 3.10 W 4-69 [» ]
3TVH X-ray 3.10 W 4-72 [» ]
3UXQ X-ray 3.20 2 1-72 [» ]
3UXR X-ray 3.20 2 1-72 [» ]
3UYE X-ray 3.00 W 1-72 [» ]
3UYG X-ray 3.00 W 1-72 [» ]
3UZ1 X-ray 3.30 W 1-72 [» ]
3UZ2 X-ray 3.30 W 1-72 [» ]
3UZ8 X-ray 3.00 W 1-72 [» ]
3UZ9 X-ray 3.00 W 1-72 [» ]
3UZF X-ray 3.30 W 1-72 [» ]
3UZH X-ray 3.30 W 1-72 [» ]
3UZK X-ray 3.30 W 1-72 [» ]
3UZN X-ray 3.30 W 1-72 [» ]
3V23 X-ray 3.00 2 1-72 [» ]
3V25 X-ray 3.00 2 1-72 [» ]
3V27 X-ray 3.10 2 1-72 [» ]
3V29 X-ray 3.10 2 1-72 [» ]
3V2D X-ray 2.70 2 1-72 [» ]
3V2F X-ray 2.70 2 1-72 [» ]
3V6W X-ray 3.90 2 1-72 [» ]
3V6X X-ray 3.90 2 1-72 [» ]
3ZN9 X-ray 3.10 2 1-72 [» ]
3ZNE X-ray 3.10 2 1-72 [» ]
3ZVP X-ray 3.80 2 1-72 [» ]
4ABS X-ray 3.10 2 1-72 [» ]
4B8G X-ray 3.70 2 1-72 [» ]
4B8I X-ray 3.70 2 1-72 [» ]
4BTD X-ray 2.95 2 2-72 [» ]
4BYC X-ray 3.35 2 1-72 [» ]
4BYE X-ray 3.35 2 1-72 [» ]
4DHA X-ray 3.20 2 1-72 [» ]
4DHC X-ray 3.20 2 1-72 [» ]
4EJB X-ray 3.52 2 1-72 [» ]
4EJC X-ray 3.52 2 1-72 [» ]
4G5L X-ray 3.30 W 1-72 [» ]
4G5N X-ray 3.30 W 1-72 [» ]
4G5U X-ray 3.10 W 1-72 [» ]
4G5W X-ray 3.10 W 1-72 [» ]
4JUX X-ray 2.86 2 1-72 [» ]
4K0M X-ray 3.30 2 2-72 [» ]
4K0Q X-ray 3.30 2 2-72 [» ]
4KX0 X-ray 3.44 2 1-72 [» ]
4KX2 X-ray 3.44 2 1-72 [» ]
4NVV X-ray 3.00 2 1-72 [» ]
4NVX X-ray 3.00 2 1-72 [» ]
4NVZ X-ray 3.10 2 1-72 [» ]
4NW1 X-ray 3.10 2 1-72 [» ]
4QCN X-ray 2.60 2 1-72 [» ]
4QCP X-ray 2.60 2 1-72 [» ]
4QCR X-ray 2.55 2 1-72 [» ]
4QCT X-ray 2.55 2 1-72 [» ]
4QCV X-ray 2.90 2 1-72 [» ]
4QCX X-ray 2.90 2 1-72 [» ]
4QCZ X-ray 2.80 2 1-72 [» ]
4QD1 X-ray 2.80 2 1-72 [» ]
ProteinModelPortali Q5SHP6.
SMRi Q5SHP6. Positions 1-62.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1684.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71507 ; BAD71507 ; BAD71507 .
GeneIDi 3169832.
KEGGi ttj:TTHA1684.
PATRICi 23958323. VBITheThe93045_1654.

Phylogenomic databases

eggNOGi deiNOG05431.
HOGENOMi HOG000248755.
KOi K02904.
OMAi GSLDQTH.
OrthoDBi EOG6VTK8Z.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1723-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5SHP6.

Family and domain databases

Gene3Di 1.10.287.310. 1 hit.
HAMAPi MF_00374. Ribosomal_L29.
InterProi IPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view ]
Pfami PF00831. Ribosomal_L29. 1 hit.
[Graphical view ]
SUPFAMi SSF46561. SSF46561. 1 hit.
TIGRFAMsi TIGR00012. L29. 1 hit.
PROSITEi PS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Systematic, computer-assisted optimisation of the isolation of Thermus thermophilus 50S ribosomal proteins by reversed-phase high-performance liquid chromatography."
    Boysen R.I., Erdmann V.A., Hearn M.T.
    J. Biochem. Biophys. Methods 37:69-89(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-59.
  3. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-20.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  5. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  6. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

Entry informationi

Entry nameiRL29_THET8
AccessioniPrimary (citable) accession number: Q5SHP6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: October 29, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3