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Protein

50S ribosomal protein L29

Gene

rpmC

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L29
Gene namesi
Name:rpmC
Ordered Locus Names:TTHA1684
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001304831 – 7250S ribosomal protein L29Add BLAST72

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1684.

Structurei

Secondary structure

172
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi3 – 14Combined sources12
Helixi18 – 41Combined sources24
Helixi49 – 71Combined sources23

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R2/Y21-72[»]
1VY4X-ray2.60B2/D21-72[»]
1VY5X-ray2.55B2/D21-72[»]
1VY6X-ray2.90B2/D21-72[»]
1VY7X-ray2.80B2/D21-72[»]
4L47X-ray3.22R2/Y21-72[»]
4L71X-ray3.90R2/Y21-72[»]
4LELX-ray3.90R2/Y21-72[»]
4LFZX-ray3.92R2/Y21-72[»]
4LNTX-ray2.94R2/Y21-72[»]
4LSKX-ray3.48R2/Y21-72[»]
4LT8X-ray3.14R2/Y21-72[»]
4P6FX-ray3.60R2/Y21-72[»]
4P70X-ray3.68R2/Y21-72[»]
4TUAX-ray3.60R2/Y21-72[»]
4TUBX-ray3.60R2/Y21-72[»]
4TUCX-ray3.60R2/Y21-72[»]
4TUDX-ray3.60R2/Y21-72[»]
4TUEX-ray3.50R2/Y21-72[»]
4V42X-ray5.50BW2-71[»]
4V4PX-ray5.50W1-72[»]
4V4XX-ray5.0017-72[»]
4V4YX-ray5.5011-72[»]
4V4ZX-ray4.5111-72[»]
4V51X-ray2.80B2/D21-72[»]
4V5AX-ray3.50B2/D21-72[»]
4V5CX-ray3.30B2/D21-72[»]
4V5DX-ray3.50B2/D21-72[»]
4V5EX-ray3.45B2/D21-72[»]
4V5FX-ray3.60B2/D21-72[»]
4V5GX-ray3.60B2/D21-72[»]
4V5JX-ray3.10B2/D21-72[»]
4V5KX-ray3.20B2/D21-72[»]
4V5LX-ray3.10B21-72[»]
4V5Melectron microscopy7.80B21-72[»]
4V5Nelectron microscopy7.60B21-72[»]
4V5PX-ray3.10B2/D21-72[»]
4V5QX-ray3.10B2/D21-72[»]
4V5RX-ray3.10B2/D21-72[»]
4V5SX-ray3.10B2/D21-72[»]
4V68electron microscopy6.40B212-62[»]
4V6AX-ray3.10B2/D21-72[»]
4V6FX-ray3.10AW/DW1-72[»]
4V6GX-ray3.50BW/DW1-72[»]
4V7JX-ray3.30A2/B21-72[»]
4V7KX-ray3.60A2/B21-72[»]
4V7LX-ray3.00B2/D21-72[»]
4V7MX-ray3.45B2/D21-72[»]
4V7WX-ray3.00B2/D21-72[»]
4V7XX-ray3.00B2/D21-72[»]
4V7YX-ray3.00B2/D21-72[»]
4V7ZX-ray3.10B2/D21-72[»]
4V87X-ray3.10AW/DW4-72[»]
4V8AX-ray3.20A2/B21-72[»]
4V8BX-ray3.00BW/DW1-72[»]
4V8CX-ray3.30AW/BW1-72[»]
4V8DX-ray3.00BW/DW1-72[»]
4V8EX-ray3.30AW/CW1-72[»]
4V8FX-ray3.30AW/DW1-72[»]
4V8GX-ray3.00B2/D21-72[»]
4V8HX-ray3.10B2/D21-72[»]
4V8IX-ray2.70B2/D21-72[»]
4V8JX-ray3.90B2/D21-72[»]
4V8NX-ray3.10B2/D21-72[»]
4V8OX-ray3.80B21-72[»]
4V8QX-ray3.10A21-72[»]
4V8UX-ray3.70B2/D21-72[»]
4V8XX-ray3.35B2/D21-72[»]
4V90X-ray2.95B22-72[»]
4V95X-ray3.20B2/D21-72[»]
4V97X-ray3.52B2/D21-72[»]
4V9AX-ray3.30BW/DW1-72[»]
4V9BX-ray3.10BW/DW1-72[»]
4V9HX-ray2.86B21-72[»]
4V9IX-ray3.30B2/D22-72[»]
4V9RX-ray3.00B2/D21-72[»]
4V9SX-ray3.10B2/D21-72[»]
4W2EX-ray2.9021-72[»]
4W2FX-ray2.40B2/D21-72[»]
4W2GX-ray2.55B2/D21-72[»]
4W2HX-ray2.70B2/D21-72[»]
4W2IX-ray2.70B2/D21-72[»]
4W4GX-ray3.30R2/Y21-72[»]
4WPOX-ray2.80A2/C21-72[»]
4WQ1X-ray3.10G5/K84-69[»]
4WQFX-ray2.80A2/C21-72[»]
4WQRX-ray3.15G5/K81-72[»]
4WQUX-ray2.80A2/C21-72[»]
4WQYX-ray2.80A2/C21-72[»]
4WR6X-ray3.05G5/K81-72[»]
4WRAX-ray3.05G5/K81-72[»]
4WROX-ray3.05K81-72[»]
4WSDX-ray2.95G5/K81-72[»]
4WSMX-ray3.30G5/K81-72[»]
4WT1X-ray3.05G5/K81-72[»]
4WT8X-ray3.40CK/DK2-72[»]
4WU1X-ray3.20G5/K81-72[»]
4WZDX-ray3.10G5/K81-72[»]
4WZOX-ray3.30G5/K81-72[»]
4Y4OX-ray2.3012/221-72[»]
4Y4PX-ray2.5012/221-72[»]
4YPBX-ray3.40R2/Y21-72[»]
4YZVX-ray3.10R2/Y21-72[»]
4Z3SX-ray2.6512/221-72[»]
4Z8CX-ray2.9012/221-72[»]
4ZERX-ray3.1012/221-70[»]
4ZSNX-ray3.60R2/Y21-72[»]
5CZPX-ray3.30R2/Y21-72[»]
5D8BX-ray3.63SB/W1-72[»]
5DFEX-ray3.10R2/Y21-72[»]
5DOXX-ray3.1012/221-72[»]
5DOYX-ray2.6012/221-72[»]
5E7KX-ray3.20G5/K81-72[»]
5E81X-ray2.95G5/K81-72[»]
5EL4X-ray3.15G5/K81-72[»]
5EL5X-ray3.15G5/K81-72[»]
5EL6X-ray3.10G5/K81-72[»]
5EL7X-ray3.15G5/K81-72[»]
5F8KX-ray2.8012/221-70[»]
5FDUX-ray2.9012/221-70[»]
5FDVX-ray2.8012/221-70[»]
5HAUX-ray3.0010/201-72[»]
5HCPX-ray2.8912/221-72[»]
5HCQX-ray2.8012/221-72[»]
5HCRX-ray2.8012/221-72[»]
5HD1X-ray2.7012/221-72[»]
5IB7X-ray2.99G5/K81-72[»]
5IB8X-ray3.13G5/K81-72[»]
5IBBX-ray2.96G5/K81-72[»]
5J30X-ray3.20R2/Y21-72[»]
5J3CX-ray3.04R2/Y21-72[»]
5J4BX-ray2.6012/221-72[»]
5J4CX-ray2.8012/221-72[»]
5J8BX-ray2.6021-72[»]
ProteinModelPortaliQ5SHP6.
SMRiQ5SHP6.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHP6.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108CHD. Bacteria.
COG0255. LUCA.
HOGENOMiHOG000248755.
KOiK02904.
OMAiRFQNATN.

Family and domain databases

CDDicd00427. Ribosomal_L29_HIP. 1 hit.
HAMAPiMF_00374. Ribosomal_L29. 1 hit.
InterProiView protein in InterPro
IPR001854. Ribosomal_L29/L35.
IPR018254. Ribosomal_L29_CS.
PfamiView protein in Pfam
PF00831. Ribosomal_L29. 1 hit.
SUPFAMiSSF46561. SSF46561. 1 hit.
TIGRFAMsiTIGR00012. L29. 1 hit.
PROSITEiView protein in PROSITE
PS00579. RIBOSOMAL_L29. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5SHP6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLSEVRKQL EEARKLSPVE LEKLVREKKR ELMELRFQAS IGQLSQNHKI
60 70
RDLKRQIARL LTVLNEKRRQ NA
Length:72
Mass (Da):8,650
Last modified:December 21, 2004 - v1
Checksum:iC113B72000929584
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti6V → M AA sequence (PubMed:9825301).Curated1
Sequence conflicti19V → M AA sequence (PubMed:9825301).Curated1

Mass spectrometryi

Molecular mass is 8652 Da from positions 1 - 72. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71507.1.
RefSeqiWP_008633416.1. NC_006461.1.
YP_144950.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71507; BAD71507; BAD71507.
GeneIDi3169832.
KEGGittj:TTHA1684.
PATRICifig|300852.9.peg.1654.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL29_THET8
AccessioniPrimary (citable) accession number: Q5SHP6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: June 7, 2017
This is version 105 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families