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Q5SHP6 (RL29_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L29
Gene names
Name:rpmC
Ordered Locus Names:TTHA1684
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length72 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. HAMAP-Rule MF_00374

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L29P family.

Mass spectrometry

Molecular mass is 8652 Da from positions 1 - 72. Determined by MALDI. Ref.4

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 727250S ribosomal protein L29 HAMAP-Rule MF_00374
PRO_0000130483

Experimental info

Sequence conflict61V → M AA sequence Ref.2
Sequence conflict191V → M AA sequence Ref.2

Secondary structure

.......... 72
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5SHP6 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: C113B72000929584

FASTA728,650
        10         20         30         40         50         60 
MKLSEVRKQL EEARKLSPVE LEKLVREKKR ELMELRFQAS IGQLSQNHKI RDLKRQIARL 

        70 
LTVLNEKRRQ NA 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Systematic, computer-assisted optimisation of the isolation of Thermus thermophilus 50S ribosomal proteins by reversed-phase high-performance liquid chromatography."
Boysen R.I., Erdmann V.A., Hearn M.T.
J. Biochem. Biophys. Methods 37:69-89(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-59.
[3]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-20.
[4]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[5]"The path of messenger RNA through the ribosome."
Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[6]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008226 Genomic DNA. Translation: BAD71507.1.
RefSeqYP_144950.1. NC_006461.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50W1-72[»]
1YL3X-ray5.50W1-72[»]
2HGJX-ray5.0017-72[»]
2HGQX-ray5.5011-72[»]
2HGUX-ray4.5111-72[»]
2J01X-ray2.8021-72[»]
2J03X-ray2.8021-72[»]
2V47X-ray3.8021-72[»]
2V49X-ray3.8021-72[»]
2WDIX-ray3.3021-72[»]
2WDJX-ray3.3021-72[»]
2WDLX-ray3.5021-72[»]
2WDNX-ray3.5021-72[»]
2WH2X-ray3.4521-72[»]
2WH4X-ray3.4521-72[»]
2WRJX-ray3.6021-72[»]
2WRLX-ray3.6021-72[»]
2WROX-ray3.6021-72[»]
2WRRX-ray3.6021-72[»]
2X9SX-ray3.1021-72[»]
2X9UX-ray3.1021-72[»]
2XG0X-ray3.2021-72[»]
2XG2X-ray3.2021-72[»]
2XQEX-ray3.1021-72[»]
2XTGelectron microscopy7.8021-72[»]
2XUXelectron microscopy7.6021-72[»]
2Y0VX-ray3.1021-72[»]
2Y0XX-ray3.1021-72[»]
2Y0ZX-ray3.1021-72[»]
2Y11X-ray3.1021-72[»]
2Y13X-ray3.1021-72[»]
2Y15X-ray3.1021-72[»]
2Y17X-ray3.1021-72[»]
2Y19X-ray3.1021-72[»]
3FINelectron microscopy6.40212-62[»]
3HUXX-ray3.1021-72[»]
3HUZX-ray3.1021-72[»]
3I8FX-ray3.10W1-72[»]
3I8IX-ray3.10W1-72[»]
3I9CX-ray3.50W1-72[»]
3I9EX-ray3.50W1-72[»]
3KIRX-ray3.3021-72[»]
3KITX-ray3.3021-72[»]
3KIWX-ray3.6021-72[»]
3KIYX-ray3.6021-72[»]
3KNIX-ray3.0021-72[»]
3KNKX-ray3.0021-72[»]
3KNMX-ray3.4521-72[»]
3KNOX-ray3.4521-72[»]
3OH5X-ray3.0021-72[»]
3OH7X-ray3.0021-72[»]
3OHJX-ray3.0021-72[»]
3OHKX-ray3.0021-72[»]
3OHZX-ray3.0021-72[»]
3OI1X-ray3.0021-72[»]
3OI3X-ray3.1021-72[»]
3OI5X-ray3.1021-72[»]
3TVEX-ray3.10W4-69[»]
3TVHX-ray3.10W4-72[»]
3UXQX-ray3.2021-72[»]
3UXRX-ray3.2021-72[»]
3UYEX-ray3.00W1-72[»]
3UYGX-ray3.00W1-72[»]
3UZ1X-ray3.30W1-72[»]
3UZ2X-ray3.30W1-72[»]
3UZ8X-ray3.00W1-72[»]
3UZ9X-ray3.00W1-72[»]
3UZFX-ray3.30W1-72[»]
3UZHX-ray3.30W1-72[»]
3UZKX-ray3.30W1-72[»]
3UZNX-ray3.30W1-72[»]
3V23X-ray3.0021-72[»]
3V25X-ray3.0021-72[»]
3V27X-ray3.1021-72[»]
3V29X-ray3.1021-72[»]
3V2DX-ray2.7021-72[»]
3V2FX-ray2.7021-72[»]
3V6WX-ray3.9021-72[»]
3V6XX-ray3.9021-72[»]
3ZN9X-ray3.1021-72[»]
3ZNEX-ray3.1021-72[»]
3ZVPX-ray3.8021-72[»]
4ABSX-ray3.1021-72[»]
4B8GX-ray3.7021-72[»]
4B8IX-ray3.7021-72[»]
4BTDX-ray2.9522-72[»]
4BYCX-ray3.3521-72[»]
4BYEX-ray3.3521-72[»]
4DHAX-ray3.2021-72[»]
4DHCX-ray3.2021-72[»]
4EJBX-ray3.5221-72[»]
4EJCX-ray3.5221-72[»]
4G5LX-ray3.30W1-72[»]
4G5NX-ray3.30W1-72[»]
4G5UX-ray3.10W1-72[»]
4G5WX-ray3.10W1-72[»]
4JUXX-ray2.8621-72[»]
4K0MX-ray3.3022-72[»]
4K0QX-ray3.3022-72[»]
4NVVX-ray3.0021-72[»]
4NVXX-ray3.0021-72[»]
4NVZX-ray3.1021-72[»]
4NW1X-ray3.1021-72[»]
ProteinModelPortalQ5SHP6.
SMRQ5SHP6. Positions 1-62.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA1684.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD71507; BAD71507; BAD71507.
GeneID3169832.
KEGGttj:TTHA1684.
PATRIC23958323. VBITheThe93045_1654.

Phylogenomic databases

eggNOGdeiNOG05431.
HOGENOMHOG000248755.
KOK02904.
OMAGSLDQTH.
OrthoDBEOG6VTK8Z.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-1723-MONOMER.

Family and domain databases

Gene3D1.10.287.310. 1 hit.
HAMAPMF_00374. Ribosomal_L29.
InterProIPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view]
PfamPF00831. Ribosomal_L29. 1 hit.
[Graphical view]
SUPFAMSSF46561. SSF46561. 1 hit.
TIGRFAMsTIGR00012. L29. 1 hit.
PROSITEPS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ5SHP6.

Entry information

Entry nameRL29_THET8
AccessionPrimary (citable) accession number: Q5SHP6
Entry history
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: July 9, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references