SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q5SHP0

- RL23_THET8

UniProt

Q5SHP0 - RL23_THET8

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
50S ribosomal protein L23
Gene
rplW, TTHA1690
Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

One of the early assembly proteins By similarity it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity.UniRule annotation

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. rRNA binding Source: UniProtKB-HAMAP
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1729-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23
Gene namesi
Name:rplW
Ordered Locus Names:TTHA1690
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 969650S ribosomal protein L23UniRule annotation
PRO_0000129427Add
BLAST

Interactioni

Subunit structurei

Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1690.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi4 – 74
Beta strandi8 – 114
Helixi15 – 184
Turni19 – 246
Beta strandi25 – 306
Beta strandi32 – 343
Helixi36 – 4712
Beta strandi51 – 599
Beta strandi63 – 664
Beta strandi69 – 724
Beta strandi76 – 838
Beta strandi88 – 914
Helixi92 – 943

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50T1-96[»]
1YL3X-ray5.50T1-96[»]
2J01X-ray2.80X1-96[»]
2J03X-ray2.80X1-96[»]
2V47X-ray3.80X1-96[»]
2V49X-ray3.80X1-96[»]
2WDIX-ray3.30X1-96[»]
2WDJX-ray3.30X1-96[»]
2WDLX-ray3.50X1-96[»]
2WDNX-ray3.50X1-96[»]
2WH2X-ray3.45X1-96[»]
2WH4X-ray3.45X1-96[»]
2WRJX-ray3.60X1-96[»]
2WRLX-ray3.60X1-96[»]
2WROX-ray3.60X1-96[»]
2WRRX-ray3.60X1-96[»]
2X9SX-ray3.10X1-96[»]
2X9UX-ray3.10X1-96[»]
2XG0X-ray3.20X1-96[»]
2XG2X-ray3.20X1-96[»]
2XQEX-ray3.10X1-96[»]
2XTGelectron microscopy7.80X1-96[»]
2XUXelectron microscopy7.60X1-96[»]
2Y0VX-ray3.10X1-96[»]
2Y0XX-ray3.10X1-96[»]
2Y0ZX-ray3.10X1-96[»]
2Y11X-ray3.10X1-96[»]
2Y13X-ray3.10X1-96[»]
2Y15X-ray3.10X1-96[»]
2Y17X-ray3.10X1-96[»]
2Y19X-ray3.10X1-96[»]
3FINelectron microscopy6.40X3-95[»]
3HUXX-ray3.10X1-96[»]
3HUZX-ray3.10X1-96[»]
3I8FX-ray3.10T1-96[»]
3I8IX-ray3.10T1-96[»]
3I9CX-ray3.50T1-96[»]
3I9EX-ray3.50T1-96[»]
3KIRX-ray3.30X1-96[»]
3KITX-ray3.30X1-96[»]
3KIWX-ray3.60X1-96[»]
3KIYX-ray3.60X1-96[»]
3KNIX-ray3.00X1-96[»]
3KNKX-ray3.00X1-96[»]
3KNMX-ray3.45X1-96[»]
3KNOX-ray3.45X1-96[»]
3TVEX-ray3.10T3-94[»]
3TVHX-ray3.10T3-94[»]
3UXQX-ray3.20X1-96[»]
3UXRX-ray3.20X1-96[»]
3UYEX-ray3.00T1-96[»]
3UYGX-ray3.00T1-96[»]
3UZ1X-ray3.30T1-96[»]
3UZ2X-ray3.30T1-96[»]
3UZ8X-ray3.00T1-96[»]
3UZ9X-ray3.00T1-96[»]
3UZFX-ray3.30T1-96[»]
3UZHX-ray3.30T1-96[»]
3UZKX-ray3.30T1-96[»]
3UZNX-ray3.30T1-96[»]
3V23X-ray3.00X1-96[»]
3V25X-ray3.00X1-96[»]
3V27X-ray3.10X1-96[»]
3V29X-ray3.10X1-96[»]
3V2DX-ray2.70X1-96[»]
3V2FX-ray2.70X1-96[»]
3V6WX-ray3.90X1-96[»]
3V6XX-ray3.90X1-96[»]
3ZN9X-ray3.10X1-96[»]
3ZNEX-ray3.10X1-96[»]
3ZVPX-ray3.80X1-96[»]
4ABSX-ray3.10X1-96[»]
4B8GX-ray3.70X1-96[»]
4B8IX-ray3.70X1-96[»]
4BTDX-ray2.95X2-96[»]
4BYCX-ray3.35X1-96[»]
4BYEX-ray3.35X1-96[»]
4DHAX-ray3.20X1-96[»]
4DHCX-ray3.20X1-96[»]
4EJBX-ray3.52X1-96[»]
4EJCX-ray3.52X1-96[»]
4G5LX-ray3.30T1-96[»]
4G5NX-ray3.30T1-96[»]
4G5UX-ray3.10T1-96[»]
4G5WX-ray3.10T1-96[»]
4JUXX-ray2.86X1-96[»]
4K0MX-ray3.30X3-94[»]
4K0QX-ray3.30X3-94[»]
4NVVX-ray3.00X1-96[»]
4NVXX-ray3.00X1-96[»]
4NVZX-ray3.10X1-96[»]
4NW1X-ray3.10X1-96[»]
ProteinModelPortaliQ5SHP0.
SMRiQ5SHP0. Positions 1-96.

Miscellaneous databases

EvolutionaryTraceiQ5SHP0.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0089.
HOGENOMiHOG000231366.
KOiK02892.
OMAiTAGMMND.
OrthoDBiEOG6HTP4P.
PhylomeDBiQ5SHP0.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5SHP0-1 [UniParc]FASTAAdd to Basket

« Hide

MKTAYDVILA PVLSEKAYAG FAEGKYTFWV HPKATKTEIK NAVETAFKVK   50
VVKVNTLHVR GKKKRLGRYL GKRPDRKKAI VQVAPGQKIE ALEGLI 96
Length:96
Mass (Da):10,737
Last modified:December 21, 2004 - v1
Checksum:i28ABA3C2D83A102A
GO

Mass spectrometryi

Molecular mass is 10737 Da from positions 1 - 96. Determined by MALDI. 1 Publication

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti18 – 181Y → R AA sequence 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71513.1.
RefSeqiYP_144956.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71513; BAD71513; BAD71513.
GeneIDi3168722.
KEGGittj:TTHA1690.
PATRICi23958335. VBITheThe93045_1660.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD71513.1 .
RefSeqi YP_144956.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1GIY X-ray 5.50 T 1-96 [» ]
1YL3 X-ray 5.50 T 1-96 [» ]
2J01 X-ray 2.80 X 1-96 [» ]
2J03 X-ray 2.80 X 1-96 [» ]
2V47 X-ray 3.80 X 1-96 [» ]
2V49 X-ray 3.80 X 1-96 [» ]
2WDI X-ray 3.30 X 1-96 [» ]
2WDJ X-ray 3.30 X 1-96 [» ]
2WDL X-ray 3.50 X 1-96 [» ]
2WDN X-ray 3.50 X 1-96 [» ]
2WH2 X-ray 3.45 X 1-96 [» ]
2WH4 X-ray 3.45 X 1-96 [» ]
2WRJ X-ray 3.60 X 1-96 [» ]
2WRL X-ray 3.60 X 1-96 [» ]
2WRO X-ray 3.60 X 1-96 [» ]
2WRR X-ray 3.60 X 1-96 [» ]
2X9S X-ray 3.10 X 1-96 [» ]
2X9U X-ray 3.10 X 1-96 [» ]
2XG0 X-ray 3.20 X 1-96 [» ]
2XG2 X-ray 3.20 X 1-96 [» ]
2XQE X-ray 3.10 X 1-96 [» ]
2XTG electron microscopy 7.80 X 1-96 [» ]
2XUX electron microscopy 7.60 X 1-96 [» ]
2Y0V X-ray 3.10 X 1-96 [» ]
2Y0X X-ray 3.10 X 1-96 [» ]
2Y0Z X-ray 3.10 X 1-96 [» ]
2Y11 X-ray 3.10 X 1-96 [» ]
2Y13 X-ray 3.10 X 1-96 [» ]
2Y15 X-ray 3.10 X 1-96 [» ]
2Y17 X-ray 3.10 X 1-96 [» ]
2Y19 X-ray 3.10 X 1-96 [» ]
3FIN electron microscopy 6.40 X 3-95 [» ]
3HUX X-ray 3.10 X 1-96 [» ]
3HUZ X-ray 3.10 X 1-96 [» ]
3I8F X-ray 3.10 T 1-96 [» ]
3I8I X-ray 3.10 T 1-96 [» ]
3I9C X-ray 3.50 T 1-96 [» ]
3I9E X-ray 3.50 T 1-96 [» ]
3KIR X-ray 3.30 X 1-96 [» ]
3KIT X-ray 3.30 X 1-96 [» ]
3KIW X-ray 3.60 X 1-96 [» ]
3KIY X-ray 3.60 X 1-96 [» ]
3KNI X-ray 3.00 X 1-96 [» ]
3KNK X-ray 3.00 X 1-96 [» ]
3KNM X-ray 3.45 X 1-96 [» ]
3KNO X-ray 3.45 X 1-96 [» ]
3TVE X-ray 3.10 T 3-94 [» ]
3TVH X-ray 3.10 T 3-94 [» ]
3UXQ X-ray 3.20 X 1-96 [» ]
3UXR X-ray 3.20 X 1-96 [» ]
3UYE X-ray 3.00 T 1-96 [» ]
3UYG X-ray 3.00 T 1-96 [» ]
3UZ1 X-ray 3.30 T 1-96 [» ]
3UZ2 X-ray 3.30 T 1-96 [» ]
3UZ8 X-ray 3.00 T 1-96 [» ]
3UZ9 X-ray 3.00 T 1-96 [» ]
3UZF X-ray 3.30 T 1-96 [» ]
3UZH X-ray 3.30 T 1-96 [» ]
3UZK X-ray 3.30 T 1-96 [» ]
3UZN X-ray 3.30 T 1-96 [» ]
3V23 X-ray 3.00 X 1-96 [» ]
3V25 X-ray 3.00 X 1-96 [» ]
3V27 X-ray 3.10 X 1-96 [» ]
3V29 X-ray 3.10 X 1-96 [» ]
3V2D X-ray 2.70 X 1-96 [» ]
3V2F X-ray 2.70 X 1-96 [» ]
3V6W X-ray 3.90 X 1-96 [» ]
3V6X X-ray 3.90 X 1-96 [» ]
3ZN9 X-ray 3.10 X 1-96 [» ]
3ZNE X-ray 3.10 X 1-96 [» ]
3ZVP X-ray 3.80 X 1-96 [» ]
4ABS X-ray 3.10 X 1-96 [» ]
4B8G X-ray 3.70 X 1-96 [» ]
4B8I X-ray 3.70 X 1-96 [» ]
4BTD X-ray 2.95 X 2-96 [» ]
4BYC X-ray 3.35 X 1-96 [» ]
4BYE X-ray 3.35 X 1-96 [» ]
4DHA X-ray 3.20 X 1-96 [» ]
4DHC X-ray 3.20 X 1-96 [» ]
4EJB X-ray 3.52 X 1-96 [» ]
4EJC X-ray 3.52 X 1-96 [» ]
4G5L X-ray 3.30 T 1-96 [» ]
4G5N X-ray 3.30 T 1-96 [» ]
4G5U X-ray 3.10 T 1-96 [» ]
4G5W X-ray 3.10 T 1-96 [» ]
4JUX X-ray 2.86 X 1-96 [» ]
4K0M X-ray 3.30 X 3-94 [» ]
4K0Q X-ray 3.30 X 3-94 [» ]
4NVV X-ray 3.00 X 1-96 [» ]
4NVX X-ray 3.00 X 1-96 [» ]
4NVZ X-ray 3.10 X 1-96 [» ]
4NW1 X-ray 3.10 X 1-96 [» ]
ProteinModelPortali Q5SHP0.
SMRi Q5SHP0. Positions 1-96.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1690.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71513 ; BAD71513 ; BAD71513 .
GeneIDi 3168722.
KEGGi ttj:TTHA1690.
PATRICi 23958335. VBITheThe93045_1660.

Phylogenomic databases

eggNOGi COG0089.
HOGENOMi HOG000231366.
KOi K02892.
OMAi TAGMMND.
OrthoDBi EOG6HTP4P.
PhylomeDBi Q5SHP0.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1729-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5SHP0.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
HAMAPi MF_01369_B. Ribosomal_L23_B.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view ]
Pfami PF00276. Ribosomal_L23. 1 hit.
[Graphical view ]
SUPFAMi SSF54189. SSF54189. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-23.
  3. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  4. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  5. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.

Entry informationi

Entry nameiRL23_THET8
AccessioniPrimary (citable) accession number: Q5SHP0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: July 9, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi