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Protein

50S ribosomal protein L23

Gene

rplW

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Ordered Locus Names:TTHA1690
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001294271 – 9650S ribosomal protein L23Add BLAST96

Interactioni

Subunit structurei

Contacts protein L29, and trigger factor when it is bound to the ribosome (By similarity). Part of the 50S ribosomal subunit.By similarity

Protein-protein interaction databases

STRINGi300852.TTHA1690.

Structurei

Secondary structure

196
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni5 – 7Combined sources3
Helixi15 – 19Combined sources5
Turni20 – 24Combined sources5
Beta strandi25 – 30Combined sources6
Helixi36 – 47Combined sources12
Beta strandi51 – 59Combined sources9
Beta strandi63 – 66Combined sources4
Beta strandi69 – 72Combined sources4
Beta strandi76 – 83Combined sources8
Helixi90 – 93Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44RX/YX1-96[»]
1VY4X-ray2.60BX/DX1-96[»]
1VY5X-ray2.55BX/DX1-96[»]
1VY6X-ray2.90BX/DX1-96[»]
1VY7X-ray2.80BX/DX1-96[»]
4L47X-ray3.22RX/YX1-96[»]
4L71X-ray3.90RX/YX1-96[»]
4LELX-ray3.90RX/YX1-96[»]
4LFZX-ray3.92RX/YX1-96[»]
4LNTX-ray2.94RX/YX1-96[»]
4LSKX-ray3.48RX/YX1-96[»]
4LT8X-ray3.14RX/YX1-96[»]
4P6FX-ray3.60RX/YX1-96[»]
4P70X-ray3.68RX/YX1-96[»]
4TUAX-ray3.60RX/YX1-96[»]
4TUBX-ray3.60RX/YX1-96[»]
4TUCX-ray3.60RX/YX1-96[»]
4TUDX-ray3.60RX/YX1-96[»]
4TUEX-ray3.50RX/YX1-96[»]
4V42X-ray5.50BT1-96[»]
4V4PX-ray5.50T1-96[»]
4V51X-ray2.80BX/DX1-96[»]
4V5AX-ray3.50BX/DX1-96[»]
4V5CX-ray3.30BX/DX1-96[»]
4V5DX-ray3.50BX/DX1-96[»]
4V5EX-ray3.45BX/DX1-96[»]
4V5FX-ray3.60BX/DX1-96[»]
4V5GX-ray3.60BX/DX1-96[»]
4V5JX-ray3.10BX/DX1-96[»]
4V5KX-ray3.20BX/DX1-96[»]
4V5LX-ray3.10BX1-96[»]
4V5Melectron microscopy7.80BX1-96[»]
4V5Nelectron microscopy7.60BX1-96[»]
4V5PX-ray3.10BX/DX1-96[»]
4V5QX-ray3.10BX/DX1-96[»]
4V5RX-ray3.10BX/DX1-96[»]
4V5SX-ray3.10BX/DX1-96[»]
4V68electron microscopy6.40BX3-95[»]
4V6AX-ray3.10BX/DX1-96[»]
4V6FX-ray3.10AT/DT1-96[»]
4V6GX-ray3.50BT/DT1-96[»]
4V7JX-ray3.30AX/BX1-96[»]
4V7KX-ray3.60AX/BX1-96[»]
4V7LX-ray3.00BX/DX1-96[»]
4V7MX-ray3.45BX/DX1-96[»]
4V7WX-ray3.00BX/DX1-96[»]
4V7XX-ray3.00BX/DX1-96[»]
4V7YX-ray3.00BX/DX1-96[»]
4V7ZX-ray3.10BX/DX1-96[»]
4V87X-ray3.10AT/DT3-94[»]
4V8AX-ray3.20AX/BX1-96[»]
4V8BX-ray3.00BT/DT1-96[»]
4V8CX-ray3.30AT/BT1-96[»]
4V8DX-ray3.00BT/DT1-96[»]
4V8EX-ray3.30AT/CT1-96[»]
4V8FX-ray3.30AT/DT1-96[»]
4V8GX-ray3.00BX/DX1-96[»]
4V8HX-ray3.10BX/DX1-96[»]
4V8IX-ray2.70BX/DX1-96[»]
4V8JX-ray3.90BX/DX1-96[»]
4V8NX-ray3.10BX/DX1-96[»]
4V8OX-ray3.80BX1-96[»]
4V8QX-ray3.10AX1-96[»]
4V8UX-ray3.70BX/DX1-96[»]
4V8XX-ray3.35BX/DX1-96[»]
4V90X-ray2.95BX2-96[»]
4V95X-ray3.20BX/DX1-96[»]
4V97X-ray3.52BX/DX1-96[»]
4V9AX-ray3.30BT/DT1-96[»]
4V9BX-ray3.10BT/DT1-96[»]
4V9HX-ray2.86BX1-96[»]
4V9IX-ray3.30BX/DX3-94[»]
4V9RX-ray3.00BX/DX1-96[»]
4V9SX-ray3.10BX/DX1-96[»]
4W2EX-ray2.90X1-96[»]
4W2FX-ray2.40BX/DX1-96[»]
4W2GX-ray2.55BX/DX1-96[»]
4W2HX-ray2.70BX/DX1-96[»]
4W2IX-ray2.70BX/DX1-96[»]
4W4GX-ray3.30RX/YX1-96[»]
4WPOX-ray2.80AX/CX1-96[»]
4WQ1X-ray3.10B5/F81-94[»]
4WQFX-ray2.80AX/CX1-96[»]
4WQRX-ray3.15B5/F81-96[»]
4WQUX-ray2.80AX/CX1-96[»]
4WQYX-ray2.80AX/CX1-96[»]
4WR6X-ray3.05B5/F81-96[»]
4WRAX-ray3.05B5/F81-96[»]
4WROX-ray3.05F81-96[»]
4WSDX-ray2.95B5/F81-96[»]
4WSMX-ray3.30B5/F81-96[»]
4WT1X-ray3.05B5/F81-96[»]
4WT8X-ray3.40CX/DX3-94[»]
4WU1X-ray3.20B5/F81-96[»]
4WZDX-ray3.10B5/F81-96[»]
4WZOX-ray3.30B5/F81-96[»]
4Y4OX-ray2.301X/2X1-96[»]
4Y4PX-ray2.501X/2X1-96[»]
4YPBX-ray3.40RX/YX1-96[»]
4YZVX-ray3.10RX/YX1-96[»]
4Z3SX-ray2.651X/2X1-96[»]
4Z8CX-ray2.901X/2X1-96[»]
4ZERX-ray3.101X/2X1-95[»]
4ZSNX-ray3.60RX/YX1-96[»]
5A9Zelectron microscopy4.70AU3-96[»]
5AA0electron microscopy5.00AU3-96[»]
5CZPX-ray3.30RX/YX1-96[»]
5D8BX-ray3.63NB/R1-96[»]
5DFEX-ray3.10RX/YX1-96[»]
5DOXX-ray3.101X/2X1-96[»]
5DOYX-ray2.601X/2X1-96[»]
5E7KX-ray3.20B5/F81-96[»]
5E81X-ray2.95B5/F81-96[»]
5EL4X-ray3.15B5/F81-96[»]
5EL5X-ray3.15B5/F81-96[»]
5EL6X-ray3.10B5/F81-96[»]
5EL7X-ray3.15B5/F81-96[»]
5F8KX-ray2.801X/2X1-95[»]
5FDUX-ray2.901X/2X1-95[»]
5FDVX-ray2.801X/2X1-95[»]
5HAUX-ray3.001V/2V1-96[»]
5HCPX-ray2.891X/2X1-96[»]
5HCQX-ray2.801X/2X1-96[»]
5HCRX-ray2.801X/2X1-96[»]
5HD1X-ray2.701X/2X1-96[»]
5IB7X-ray2.99B5/F81-96[»]
5IB8X-ray3.13B5/F81-96[»]
5IBBX-ray2.96B5/F81-96[»]
5IMQelectron microscopy3.80p1-96[»]
5IMRelectron microscopy-p1-96[»]
5J30X-ray3.20RX/YX1-96[»]
5J3CX-ray3.04RX/YX1-96[»]
5J4BX-ray2.601X/2X1-96[»]
5J4CX-ray2.801X/2X1-96[»]
5J8BX-ray2.60X1-96[»]
5VP2X-ray2.801X/2X1-96[»]
5W4KX-ray2.701X/2X1-96[»]
ProteinModelPortaliQ5SHP0.
SMRiQ5SHP0.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHP0.

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL23 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG41080UE. Bacteria.
COG0089. LUCA.
HOGENOMiHOG000231366.
KOiK02892.
OMAiTMNPPRR.
PhylomeDBiQ5SHP0.

Family and domain databases

HAMAPiMF_01369_B. Ribosomal_L23_B. 1 hit.
InterProiView protein in InterPro
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
PfamiView protein in Pfam
PF00276. Ribosomal_L23. 1 hit.
SUPFAMiSSF54189. SSF54189. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5SHP0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTAYDVILA PVLSEKAYAG FAEGKYTFWV HPKATKTEIK NAVETAFKVK
60 70 80 90
VVKVNTLHVR GKKKRLGRYL GKRPDRKKAI VQVAPGQKIE ALEGLI
Length:96
Mass (Da):10,737
Last modified:December 21, 2004 - v1
Checksum:i28ABA3C2D83A102A
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti18Y → R AA sequence (PubMed:11154066).Curated1

Mass spectrometryi

Q5SHP0: Molecular mass is 10737 Da from positions 1 - 96. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD71513.1.
RefSeqiWP_008633421.1. NC_006461.1.
YP_144956.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71513; BAD71513; BAD71513.
GeneIDi3168722.
KEGGittj:TTHA1690.
PATRICifig|300852.9.peg.1660.

Similar proteinsi

Entry informationi

Entry nameiRL23_THET8
AccessioniPrimary (citable) accession number: Q5SHP0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: October 25, 2017
This is version 108 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families