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Q5SHP0 (RL23_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L23
Gene names
Name:rplW
Ordered Locus Names:TTHA1690
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length96 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

One of the early assembly proteins By similarity it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP-Rule MF_01369

Subunit structure

Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L23P family.

Mass spectrometry

Molecular mass is 10737 Da from positions 1 - 96. Determined by MALDI. Ref.3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 969650S ribosomal protein L23 HAMAP-Rule MF_01369
PRO_0000129427

Experimental info

Sequence conflict181Y → R AA sequence Ref.2

Secondary structure

....................... 96
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5SHP0 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: 28ABA3C2D83A102A

FASTA9610,737
        10         20         30         40         50         60 
MKTAYDVILA PVLSEKAYAG FAEGKYTFWV HPKATKTEIK NAVETAFKVK VVKVNTLHVR 

        70         80         90 
GKKKRLGRYL GKRPDRKKAI VQVAPGQKIE ALEGLI 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-23.
[3]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[4]"The path of messenger RNA through the ribosome."
Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[5]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008226 Genomic DNA. Translation: BAD71513.1.
RefSeqYP_144956.1. NC_006461.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1GIYX-ray5.50T1-96[»]
1YL3X-ray5.50T1-96[»]
2J01X-ray2.80X1-96[»]
2J03X-ray2.80X1-96[»]
2V47X-ray3.80X1-96[»]
2V49X-ray3.80X1-96[»]
2WDIX-ray3.30X1-96[»]
2WDJX-ray3.30X1-96[»]
2WDLX-ray3.50X1-96[»]
2WDNX-ray3.50X1-96[»]
2WH2X-ray3.45X1-96[»]
2WH4X-ray3.45X1-96[»]
2WRJX-ray3.60X1-96[»]
2WRLX-ray3.60X1-96[»]
2WROX-ray3.60X1-96[»]
2WRRX-ray3.60X1-96[»]
2X9SX-ray3.10X1-96[»]
2X9UX-ray3.10X1-96[»]
2XG0X-ray3.20X1-96[»]
2XG2X-ray3.20X1-96[»]
2XQEX-ray3.10X1-96[»]
2XTGelectron microscopy7.80X1-96[»]
2XUXelectron microscopy7.60X1-96[»]
2Y0VX-ray3.10X1-96[»]
2Y0XX-ray3.10X1-96[»]
2Y0ZX-ray3.10X1-96[»]
2Y11X-ray3.10X1-96[»]
2Y13X-ray3.10X1-96[»]
2Y15X-ray3.10X1-96[»]
2Y17X-ray3.10X1-96[»]
2Y19X-ray3.10X1-96[»]
3FINelectron microscopy6.40X3-95[»]
3HUXX-ray3.10X1-96[»]
3HUZX-ray3.10X1-96[»]
3I8FX-ray3.10T1-96[»]
3I8IX-ray3.10T1-96[»]
3I9CX-ray3.50T1-96[»]
3I9EX-ray3.50T1-96[»]
3KIRX-ray3.30X1-96[»]
3KITX-ray3.30X1-96[»]
3KIWX-ray3.60X1-96[»]
3KIYX-ray3.60X1-96[»]
3KNIX-ray3.00X1-96[»]
3KNKX-ray3.00X1-96[»]
3KNMX-ray3.45X1-96[»]
3KNOX-ray3.45X1-96[»]
3TVEX-ray3.10T3-94[»]
3TVHX-ray3.10T3-94[»]
3UXQX-ray3.20X1-96[»]
3UXRX-ray3.20X1-96[»]
3UYEX-ray3.00T1-96[»]
3UYGX-ray3.00T1-96[»]
3UZ1X-ray3.30T1-96[»]
3UZ2X-ray3.30T1-96[»]
3UZ8X-ray3.00T1-96[»]
3UZ9X-ray3.00T1-96[»]
3UZFX-ray3.30T1-96[»]
3UZHX-ray3.30T1-96[»]
3UZKX-ray3.30T1-96[»]
3UZNX-ray3.30T1-96[»]
3V23X-ray3.00X1-96[»]
3V25X-ray3.00X1-96[»]
3V27X-ray3.10X1-96[»]
3V29X-ray3.10X1-96[»]
3V2DX-ray2.70X1-96[»]
3V2FX-ray2.70X1-96[»]
3V6WX-ray3.90X1-96[»]
3V6XX-ray3.90X1-96[»]
3ZN9X-ray3.10X1-96[»]
3ZNEX-ray3.10X1-96[»]
3ZVPX-ray3.80X1-96[»]
4ABSX-ray3.10X1-96[»]
4B8GX-ray3.70X1-96[»]
4B8IX-ray3.70X1-96[»]
4BTDX-ray2.95X2-96[»]
4BYCX-ray3.35X1-96[»]
4BYEX-ray3.35X1-96[»]
4DHAX-ray3.20X1-96[»]
4DHCX-ray3.20X1-96[»]
4EJBX-ray3.52X1-96[»]
4EJCX-ray3.52X1-96[»]
4G5LX-ray3.30T1-96[»]
4G5NX-ray3.30T1-96[»]
4G5UX-ray3.10T1-96[»]
4G5WX-ray3.10T1-96[»]
4JUXX-ray2.86X1-96[»]
4K0MX-ray3.30X3-94[»]
4K0QX-ray3.30X3-94[»]
4NVVX-ray3.00X1-96[»]
4NVXX-ray3.00X1-96[»]
4NVZX-ray3.10X1-96[»]
4NW1X-ray3.10X1-96[»]
ProteinModelPortalQ5SHP0.
SMRQ5SHP0. Positions 1-96.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA1690.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD71513; BAD71513; BAD71513.
GeneID3168722.
KEGGttj:TTHA1690.
PATRIC23958335. VBITheThe93045_1660.

Phylogenomic databases

eggNOGCOG0089.
HOGENOMHOG000231366.
KOK02892.
OMATAGMMND.
OrthoDBEOG6HTP4P.
PhylomeDBQ5SHP0.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-1729-MONOMER.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
HAMAPMF_01369_B. Ribosomal_L23_B.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMSSF54189. SSF54189. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ5SHP0.

Entry information

Entry nameRL23_THET8
AccessionPrimary (citable) accession number: Q5SHP0
Entry history
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: July 9, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references