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Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the binding of tRNA to the ribosomes (By similarity). Part of the top of the 30S subunit head.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S10UniRule annotation
Gene namesi
Name:rpsJ
Ordered Locus Names:TTHA1693
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Chemistry databases

DrugBankiDB08185. 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE.
DB01421. Paromomycin.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001466202 – 10530S ribosomal protein S10Add BLAST104

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight complex with proteins S3 and S14. Also contacts protein S9.

Protein-protein interaction databases

STRINGi300852.TTHA1693.

Structurei

Secondary structure

1105
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi6 – 11Combined sources6
Turni15 – 20Combined sources6
Helixi22 – 25Combined sources4
Turni26 – 28Combined sources3
Beta strandi29 – 31Combined sources3
Beta strandi34 – 38Combined sources5
Beta strandi39 – 43Combined sources5
Beta strandi46 – 48Combined sources3
Beta strandi51 – 55Combined sources5
Helixi57 – 59Combined sources3
Beta strandi62 – 64Combined sources3
Beta strandi67 – 70Combined sources4
Beta strandi74 – 76Combined sources3
Turni78 – 80Combined sources3
Helixi81 – 84Combined sources4
Beta strandi85 – 87Combined sources3
Beta strandi92 – 94Combined sources3
Beta strandi95 – 98Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00J1-105[»]
1HNWX-ray3.40J1-105[»]
1HNXX-ray3.40J1-105[»]
1HNZX-ray3.30J1-105[»]
1HR0X-ray3.20J1-105[»]
1I94X-ray3.20J2-105[»]
1I95X-ray4.50J2-105[»]
1I96X-ray4.20J2-105[»]
1I97X-ray4.50J2-105[»]
1IBKX-ray3.31J1-105[»]
1IBLX-ray3.11J1-105[»]
1IBMX-ray3.31J1-105[»]
1J5EX-ray3.05J2-105[»]
1JGOX-ray5.60M1-105[»]
1JGPX-ray7.00M1-105[»]
1JGQX-ray5.00M1-105[»]
1L1Umodel-J3-100[»]
1ML5electron microscopy14.00M1-105[»]
1N32X-ray3.00J2-105[»]
1N33X-ray3.35J2-105[»]
1N34X-ray3.80J2-105[»]
1N36X-ray3.65J2-105[»]
1VVJX-ray3.44QJ/XJ1-105[»]
1VY4X-ray2.60AJ/CJ1-105[»]
1VY5X-ray2.55AJ/CJ1-105[»]
1VY6X-ray2.90AJ/CJ1-105[»]
1VY7X-ray2.80AJ/CJ1-105[»]
1XMOX-ray3.25J1-105[»]
1XMQX-ray3.00J1-105[»]
1XNQX-ray3.05J1-105[»]
1XNRX-ray3.10J1-105[»]
2E5LX-ray3.30J2-105[»]
2F4VX-ray3.80J1-105[»]
2HHHX-ray3.35J1-105[»]
2UU9X-ray3.10J2-105[»]
2UUAX-ray2.90J2-105[»]
2UUBX-ray2.80J2-105[»]
2UUCX-ray3.10J2-105[»]
2UXBX-ray3.10J2-105[»]
2UXCX-ray2.90J2-105[»]
2UXDX-ray3.20J2-105[»]
2VQEX-ray2.50J1-105[»]
2VQFX-ray2.90J1-105[»]
2ZM6X-ray3.30J2-105[»]
3OTOX-ray3.69J1-105[»]
3T1HX-ray3.11J1-105[»]
3T1YX-ray2.80J1-105[»]
4AQYX-ray3.50J2-105[»]
4B3MX-ray2.90J2-105[»]
4B3RX-ray3.00J2-105[»]
4B3SX-ray3.15J2-105[»]
4B3TX-ray3.00J2-105[»]
4DR1X-ray3.60J1-105[»]
4DR2X-ray3.25J1-105[»]
4DR3X-ray3.35J1-105[»]
4DR4X-ray3.97J1-105[»]
4DR5X-ray3.45J1-105[»]
4DR6X-ray3.30J1-105[»]
4DR7X-ray3.75J1-105[»]
4DUYX-ray3.39J1-105[»]
4DUZX-ray3.65J1-105[»]
4DV0X-ray3.85J1-105[»]
4DV1X-ray3.85J1-105[»]
4DV2X-ray3.65J1-105[»]
4DV3X-ray3.55J1-105[»]
4DV4X-ray3.65J1-105[»]
4DV5X-ray3.68J1-105[»]
4DV6X-ray3.30J1-105[»]
4DV7X-ray3.29J1-105[»]
4GKJX-ray3.30J3-100[»]
4GKKX-ray3.20J3-100[»]
4JI0X-ray3.49J1-105[»]
4JI1X-ray3.14J1-105[»]
4JI2X-ray3.64J1-105[»]
4JI3X-ray3.35J1-105[»]
4JI4X-ray3.69J1-105[»]
4JI5X-ray3.85J1-105[»]
4JI6X-ray3.55J1-105[»]
4JI7X-ray3.50J1-105[»]
4JI8X-ray3.74J1-105[»]
4JV5X-ray3.16J3-100[»]
4JYAX-ray3.10J3-100[»]
4K0KX-ray3.40J3-101[»]
4KHPX-ray3.10J3-100[»]
4L47X-ray3.22QJ/XJ1-105[»]
4L71X-ray3.90QJ/XJ1-105[»]
4LELX-ray3.90QJ/XJ1-105[»]
4LF4X-ray3.34J1-105[»]
4LF5X-ray3.75J1-105[»]
4LF6X-ray3.31J1-105[»]
4LF7X-ray3.15J1-105[»]
4LF8X-ray3.15J1-105[»]
4LF9X-ray3.28J1-105[»]
4LFAX-ray3.65J1-105[»]
4LFBX-ray3.01J1-105[»]
4LFCX-ray3.60J1-105[»]
4LFZX-ray3.92QJ/XJ1-105[»]
4LNTX-ray2.94QJ/XJ1-105[»]
4LSKX-ray3.48QJ/XJ1-105[»]
4LT8X-ray3.14QJ/XJ1-105[»]
4NXMX-ray3.65J1-105[»]
4NXNX-ray3.54J1-105[»]
4OX9X-ray3.80J2-105[»]
4P6FX-ray3.60QJ/XJ1-105[»]
4P70X-ray3.68QJ/XJ1-105[»]
4TUAX-ray3.60QJ/XJ1-105[»]
4TUBX-ray3.60QJ/XJ1-105[»]
4TUCX-ray3.60QJ/XJ1-105[»]
4TUDX-ray3.60QJ/XJ1-105[»]
4TUEX-ray3.50QJ/XJ1-105[»]
4V42X-ray5.50AM1-105[»]
4V49X-ray8.70J3-100[»]
4V4AX-ray9.50J3-100[»]
4V4IX-ray3.71k-[»]
4V4PX-ray5.50BM1-105[»]
4V4RX-ray5.90AJ1-105[»]
4V4SX-ray6.76AJ1-105[»]
4V4TX-ray6.46AJ1-105[»]
4V4XX-ray5.00AM1-105[»]
4V4YX-ray5.50AM1-105[»]
4V4ZX-ray4.51AM1-105[»]
4V51X-ray2.80AJ/CJ2-105[»]
4V5AX-ray3.50AJ/CJ2-105[»]
4V5CX-ray3.30AJ/CJ1-105[»]
4V5DX-ray3.50AJ/CJ1-105[»]
4V5EX-ray3.45AJ/CJ1-105[»]
4V5FX-ray3.60AJ/CJ1-105[»]
4V5GX-ray3.60AJ/CJ1-105[»]
4V5JX-ray3.10AJ/CJ1-105[»]
4V5KX-ray3.20AJ/CJ1-105[»]
4V5LX-ray3.10AJ1-105[»]
4V5Melectron microscopy7.80AJ1-105[»]
4V5Nelectron microscopy7.60AJ1-105[»]
4V5PX-ray3.10AJ/CJ1-105[»]
4V5QX-ray3.10AJ/CJ1-105[»]
4V5RX-ray3.10AJ/CJ1-105[»]
4V5SX-ray3.10AJ/CJ1-105[»]
4V68electron microscopy6.40AJ3-101[»]
4V6AX-ray3.10AJ/CJ1-105[»]
4V6FX-ray3.10BM/CM1-105[»]
4V6GX-ray3.50AM/CM1-105[»]
4V7JX-ray3.30Aj/Bj1-105[»]
4V7KX-ray3.60Aj/Bj1-105[»]
4V7LX-ray3.00AJ/CJ1-105[»]
4V7MX-ray3.45AJ/CJ1-105[»]
4V7WX-ray3.00AJ/CJ1-105[»]
4V7XX-ray3.00AJ/CJ1-105[»]
4V7YX-ray3.00AJ/CJ1-105[»]
4V7ZX-ray3.10AJ/CJ1-105[»]
4V87X-ray3.10BM/CM1-105[»]
4V8AX-ray3.20CJ/DJ1-105[»]
4V8BX-ray3.00AM/CM1-105[»]
4V8CX-ray3.30CM/DM1-105[»]
4V8DX-ray3.00AM/CM1-105[»]
4V8EX-ray3.30BM/DM1-105[»]
4V8FX-ray3.30BM/CM1-105[»]
4V8GX-ray3.00AJ/CJ1-105[»]
4V8HX-ray3.10AJ/CJ1-105[»]
4V8IX-ray2.70AJ/CJ1-105[»]
4V8JX-ray3.90AJ/CJ1-105[»]
4V8NX-ray3.10AJ/CJ1-105[»]
4V8OX-ray3.80AJ1-105[»]
4V8QX-ray3.10BJ1-105[»]
4V8UX-ray3.70AJ/CJ1-105[»]
4V8XX-ray3.35AJ/CJ1-105[»]
4V90X-ray2.95AJ1-105[»]
4V95X-ray3.20AJ/CJ1-105[»]
4V97X-ray3.52AJ/CJ1-105[»]
4V9AX-ray3.30AM/CM1-105[»]
4V9BX-ray3.10AM/CM1-105[»]
4V9HX-ray2.86AJ3-100[»]
4V9IX-ray3.30AJ/CJ3-100[»]
4V9RX-ray3.00AJ/CJ1-105[»]
4V9SX-ray3.10AJ/CJ1-105[»]
4W2EX-ray2.90j1-105[»]
4W2FX-ray2.40AJ/CJ1-105[»]
4W2GX-ray2.55AJ/CJ1-105[»]
4W2HX-ray2.70AJ/CJ1-105[»]
4W2IX-ray2.70AJ/CJ1-105[»]
4W4GX-ray3.30QJ/XJ1-105[»]
4WPOX-ray2.80BJ/DJ1-105[»]
4WQ1X-ray3.101A/1I1-105[»]
4WQFX-ray2.80BJ/DJ1-105[»]
4WQRX-ray3.151A/1I1-105[»]
4WQUX-ray2.80BJ/DJ1-105[»]
4WQYX-ray2.80BJ/DJ1-105[»]
4WR6X-ray3.051A/1I1-105[»]
4WRAX-ray3.051A/1I1-105[»]
4WROX-ray3.051I1-105[»]
4WSDX-ray2.951A/1I1-105[»]
4WSMX-ray3.301A/1I1-105[»]
4WT1X-ray3.051A/1I1-105[»]
4WT8X-ray3.40AJ/BJ3-100[»]
4WU1X-ray3.201A/1I1-105[»]
4WZDX-ray3.101A/1I1-105[»]
4WZOX-ray3.301A/1I1-105[»]
4X62X-ray3.45J3-101[»]
4X64X-ray3.35J3-101[»]
4X65X-ray3.35J3-101[»]
4X66X-ray3.45J3-101[»]
4Y4OX-ray2.301j/2j1-105[»]
4Y4PX-ray2.501j/2j1-105[»]
4YHHX-ray3.42J3-101[»]
4YPBX-ray3.40QJ/XJ1-105[»]
4YY3X-ray3.60J1-105[»]
4YZVX-ray3.10QJ/XJ1-105[»]
4Z3SX-ray2.651j/2j1-105[»]
4Z8CX-ray2.901j/2j1-105[»]
4ZERX-ray3.101j/2j4-100[»]
4ZSNX-ray3.60QJ/XJ1-105[»]
5A9Zelectron microscopy4.70BN3-100[»]
5AA0electron microscopy5.00BN3-100[»]
5BR8X-ray3.40J1-105[»]
5CZPX-ray3.30QJ/XJ1-105[»]
5D8BX-ray3.63GC/KA1-105[»]
5DFEX-ray3.10QJ/XJ1-105[»]
5DOXX-ray3.101j/2j1-105[»]
5DOYX-ray2.601j/2j1-105[»]
5E7KX-ray3.201A/1I1-105[»]
5E81X-ray2.951A/1I1-105[»]
5EL4X-ray3.151A/1I1-105[»]
5EL5X-ray3.151A/1I1-105[»]
5EL6X-ray3.101A/1I1-105[»]
5EL7X-ray3.151A/1I1-105[»]
5F8KX-ray2.801j/2j4-100[»]
5FDUX-ray2.901j/2j4-100[»]
5FDVX-ray2.801j/2j4-100[»]
5HAUX-ray3.001j/2j1-105[»]
5HCPX-ray2.891j/2j1-105[»]
5HCQX-ray2.801j/2j1-105[»]
5HCRX-ray2.801j/2j1-105[»]
5HD1X-ray2.701j/2j1-105[»]
5IB7X-ray2.991A/1I1-105[»]
5IB8X-ray3.131A/1I1-105[»]
5IBBX-ray2.961A/1I1-105[»]
5IMQelectron microscopy3.80N1-105[»]
5IMRelectron microscopy-N1-105[»]
5IWAX-ray3.50J3-101[»]
5J30X-ray3.20QJ/XJ1-105[»]
5J3CX-ray3.04QJ/XJ1-105[»]
5J4BX-ray2.601j/2j1-105[»]
5J4CX-ray2.801j/2j1-105[»]
5J8BX-ray2.60j1-105[»]
5LMNelectron microscopy3.55J1-105[»]
5LMOelectron microscopy4.30J1-105[»]
5LMPelectron microscopy5.35J1-105[»]
5LMQelectron microscopy4.20J1-105[»]
5LMRelectron microscopy4.45J1-105[»]
5LMSelectron microscopy5.10J1-105[»]
5LMTelectron microscopy4.15J1-105[»]
5LMUelectron microscopy4.00J1-105[»]
5LMVelectron microscopy4.90J1-105[»]
5VP2X-ray2.801j/2j1-105[»]
5W4KX-ray2.701j/2j1-105[»]
ProteinModelPortaliQ5SHN7.
SMRiQ5SHN7.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHN7.

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uS10 family.UniRule annotationCurated

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.
HOGENOMiHOG000270246.
KOiK02946.
OMAiREQFQLC.
PhylomeDBiQ5SHN7.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiView protein in InterPro
IPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
IPR036838. Ribosomal_S10_dom_sf.
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiView protein in Pfam
PF00338. Ribosomal_S10. 1 hit.
PRINTSiPR00971. RIBOSOMALS10.
SMARTiView protein in SMART
SM01403. Ribosomal_S10. 1 hit.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00361. RIBOSOMAL_S10. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SHN7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI
60 70 80 90 100
RGPFKHKDSR EHFELRTHNR LVDIINPNRK TIEQLMTLDL PTGVEIEIKT

VGGGR
Length:105
Mass (Da):11,930
Last modified:January 23, 2007 - v3
Checksum:iE769CB9EFE2C4EF4
GO

Mass spectrometryi

Q5SHN7: Molecular mass is 11799 Da from positions 2 - 105. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U36504 Genomic DNA. Translation: AAA97863.1.
AP008226 Genomic DNA. Translation: BAD71516.1.
PIRiS10249. R3TW12.
RefSeqiWP_008633424.1. NC_006461.1.
YP_144959.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71516; BAD71516; BAD71516.
GeneIDi3167932.
KEGGittj:TTHA1693.
PATRICifig|300852.9.peg.1663.

Similar proteinsi

Entry informationi

Entry nameiRS10_THET8
AccessioniPrimary (citable) accession number: Q5SHN7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: October 25, 2017
This is version 126 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families