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Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Part of the top of the 30S subunit head.

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1732-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S10
Gene namesi
Name:rpsJ
Ordered Locus Names:TTHA1693
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Pathology & Biotechi

Chemistry

DrugBankiDB01421. Paromomycin.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 10510430S ribosomal protein S10PRO_0000146620Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight complex with proteins S3 and S14. Also contacts protein S9.

Protein-protein interaction databases

STRINGi300852.TTHA1693.

Structurei

Secondary structure

1
105
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 116Combined sources
Turni15 – 206Combined sources
Helixi22 – 254Combined sources
Turni26 – 283Combined sources
Beta strandi29 – 313Combined sources
Beta strandi34 – 385Combined sources
Beta strandi39 – 435Combined sources
Beta strandi46 – 483Combined sources
Beta strandi51 – 555Combined sources
Helixi57 – 593Combined sources
Beta strandi62 – 643Combined sources
Beta strandi67 – 704Combined sources
Beta strandi74 – 763Combined sources
Turni78 – 803Combined sources
Helixi81 – 844Combined sources
Beta strandi85 – 873Combined sources
Beta strandi92 – 943Combined sources
Beta strandi95 – 984Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00J1-105[»]
1HNWX-ray3.40J1-105[»]
1HNXX-ray3.40J1-105[»]
1HNZX-ray3.30J1-105[»]
1HR0X-ray3.20J1-105[»]
1I94X-ray3.20J2-105[»]
1I95X-ray4.50J2-105[»]
1I96X-ray4.20J2-105[»]
1I97X-ray4.50J2-105[»]
1IBKX-ray3.31J1-105[»]
1IBLX-ray3.11J1-105[»]
1IBMX-ray3.31J1-105[»]
1J5EX-ray3.05J2-105[»]
1JGOX-ray5.60M1-105[»]
1JGPX-ray7.00M1-105[»]
1JGQX-ray5.00M1-105[»]
1L1Umodel-J3-100[»]
1ML5electron microscopy14.00M1-105[»]
1N32X-ray3.00J2-105[»]
1N33X-ray3.35J2-105[»]
1N34X-ray3.80J2-105[»]
1N36X-ray3.65J2-105[»]
1VVJX-ray3.44QJ/XJ1-105[»]
1VY4X-ray2.60AJ/CJ1-105[»]
1VY5X-ray2.55AJ/CJ1-105[»]
1VY6X-ray2.90AJ/CJ1-105[»]
1VY7X-ray2.80AJ/CJ1-105[»]
1XMOX-ray3.25J1-105[»]
1XMQX-ray3.00J1-105[»]
1XNQX-ray3.05J1-105[»]
1XNRX-ray3.10J1-105[»]
2E5LX-ray3.30J2-105[»]
2F4VX-ray3.80J1-105[»]
2HHHX-ray3.35J1-105[»]
2UU9X-ray3.10J2-105[»]
2UUAX-ray2.90J2-105[»]
2UUBX-ray2.80J2-105[»]
2UUCX-ray3.10J2-105[»]
2UXBX-ray3.10J2-105[»]
2UXCX-ray2.90J2-105[»]
2UXDX-ray3.20J2-105[»]
2VQEX-ray2.50J1-105[»]
2VQFX-ray2.90J1-105[»]
2ZM6X-ray3.30J2-105[»]
3OTOX-ray3.69J1-105[»]
3T1HX-ray3.11J1-105[»]
3T1YX-ray2.80J1-105[»]
4AQYX-ray3.50J2-105[»]
4B3MX-ray2.90J2-105[»]
4B3RX-ray3.00J2-105[»]
4B3SX-ray3.15J2-105[»]
4B3TX-ray3.00J2-105[»]
4DR1X-ray3.60J1-105[»]
4DR2X-ray3.25J1-105[»]
4DR3X-ray3.35J1-105[»]
4DR4X-ray3.97J1-105[»]
4DR5X-ray3.45J1-105[»]
4DR6X-ray3.30J1-105[»]
4DR7X-ray3.75J1-105[»]
4DUYX-ray3.39J1-105[»]
4DUZX-ray3.65J1-105[»]
4DV0X-ray3.85J1-105[»]
4DV1X-ray3.85J1-105[»]
4DV2X-ray3.65J1-105[»]
4DV3X-ray3.55J1-105[»]
4DV4X-ray3.65J1-105[»]
4DV5X-ray3.68J1-105[»]
4DV6X-ray3.30J1-105[»]
4DV7X-ray3.29J1-105[»]
4GKJX-ray3.30J3-100[»]
4GKKX-ray3.20J3-100[»]
4JI0X-ray3.49J1-105[»]
4JI1X-ray3.14J1-105[»]
4JI2X-ray3.64J1-105[»]
4JI3X-ray3.35J1-105[»]
4JI4X-ray3.69J1-105[»]
4JI5X-ray3.85J1-105[»]
4JI6X-ray3.55J1-105[»]
4JI7X-ray3.50J1-105[»]
4JI8X-ray3.74J1-105[»]
4JV5X-ray3.16J3-100[»]
4JYAX-ray3.10J3-100[»]
4K0KX-ray3.40J3-101[»]
4KHPX-ray3.10J3-100[»]
4L47X-ray3.22QJ/XJ1-105[»]
4L71X-ray3.90QJ/XJ1-105[»]
4LELX-ray3.90QJ/XJ1-105[»]
4LF4X-ray3.34J1-105[»]
4LF5X-ray3.75J1-105[»]
4LF6X-ray3.31J1-105[»]
4LF7X-ray3.15J1-105[»]
4LF8X-ray3.15J1-105[»]
4LF9X-ray3.28J1-105[»]
4LFAX-ray3.65J1-105[»]
4LFBX-ray3.01J1-105[»]
4LFCX-ray3.60J1-105[»]
4LFZX-ray3.92QJ/XJ1-105[»]
4LNTX-ray2.94QJ/XJ1-105[»]
4LSKX-ray3.48QJ/XJ1-105[»]
4LT8X-ray3.14QJ/XJ1-105[»]
4NXMX-ray3.65J1-105[»]
4NXNX-ray3.54J1-105[»]
4OX9X-ray3.80J2-105[»]
4P6FX-ray3.60QJ/XJ1-105[»]
4P70X-ray3.68QJ/XJ1-105[»]
4V42X-ray5.50AM1-105[»]
4V49X-ray8.70J3-100[»]
4V4AX-ray9.50J3-100[»]
4V4IX-ray3.71k-[»]
4V4PX-ray5.50BM1-105[»]
4V4RX-ray5.90J1-105[»]
4V4SX-ray6.76J1-105[»]
4V4TX-ray6.46J1-105[»]
4V4XX-ray5.00AM1-105[»]
4V4YX-ray5.50M1-105[»]
4V4ZX-ray4.51M1-105[»]
4V51X-ray2.80AJ/CJ2-105[»]
4V5AX-ray3.50AJ/CJ2-105[»]
4V5CX-ray3.30AJ/CJ1-105[»]
4V5DX-ray3.50AJ/CJ1-105[»]
4V5EX-ray3.45AJ/CJ1-105[»]
4V5FX-ray3.60AJ/CJ1-105[»]
4V5GX-ray3.60AJ/CJ1-105[»]
4V5JX-ray3.10AJ/CJ1-105[»]
4V5KX-ray3.20AJ/CJ1-105[»]
4V5LX-ray3.10J1-105[»]
4V5Melectron microscopy7.80AJ1-105[»]
4V5Nelectron microscopy7.60AJ1-105[»]
4V5PX-ray3.10AJ/CJ1-105[»]
4V5QX-ray3.10AJ/CJ1-105[»]
4V5RX-ray3.10AJ/CJ1-105[»]
4V5SX-ray3.10AJ/CJ1-105[»]
4V68electron microscopy6.40AJ3-101[»]
4V6AX-ray3.10AJ/CJ1-105[»]
4V6FX-ray3.10BM/CM1-105[»]
4V6GX-ray3.50AM/CM1-105[»]
4V7JX-ray3.30Aj/Bj1-105[»]
4V7KX-ray3.60Aj/Bj1-105[»]
4V7LX-ray3.00AJ/CJ1-105[»]
4V7MX-ray3.45AJ/CJ1-105[»]
4V7WX-ray3.00AJ/CJ1-105[»]
4V7XX-ray3.00AJ/CJ1-105[»]
4V7YX-ray3.00AJ/CJ1-105[»]
4V7ZX-ray3.10AJ/CJ1-105[»]
4V87X-ray3.10BM/CM1-105[»]
4V8AX-ray3.20CJ/DJ1-105[»]
4V8BX-ray3.00AM/CM1-105[»]
4V8CX-ray3.30CM/DM1-105[»]
4V8DX-ray3.00AM/CM1-105[»]
4V8EX-ray3.30BM/DM1-105[»]
4V8FX-ray3.30BM/CM1-105[»]
4V8GX-ray3.00AJ/CJ1-105[»]
4V8HX-ray3.10AJ/CJ1-105[»]
4V8IX-ray2.70AJ/CJ1-105[»]
4V8JX-ray3.90AJ/CJ1-105[»]
4V8NX-ray3.10AJ/CJ1-105[»]
4V8OX-ray3.80AJ1-105[»]
4V8QX-ray3.10BJ1-105[»]
4V8UX-ray3.70AJ/CJ1-105[»]
4V8XX-ray3.35AJ/CJ1-105[»]
4V90X-ray2.95AJ1-105[»]
4V95X-ray3.20AJ/CJ1-105[»]
4V97X-ray3.52AJ/CJ1-105[»]
4V9AX-ray3.30AM/CM1-105[»]
4V9BX-ray3.10AM/CM1-105[»]
4V9HX-ray2.86AJ3-100[»]
4V9IX-ray3.30AJ/CJ3-100[»]
4V9RX-ray3.00AJ/CJ1-105[»]
4V9SX-ray3.10AJ/CJ1-105[»]
4W2EX-ray2.90j1-105[»]
4W2FX-ray2.40AJ/CJ1-105[»]
4W2GX-ray2.55AJ/CJ1-105[»]
4W2HX-ray2.70AJ/CJ1-105[»]
4W2IX-ray2.70AJ/CJ1-105[»]
4WPOX-ray2.80BJ/DJ1-105[»]
4WQFX-ray2.80BJ/DJ1-105[»]
4WQUX-ray2.80BJ/DJ1-105[»]
4WQYX-ray2.80BJ/DJ1-105[»]
4WT8X-ray3.40J3-100[»]
4WUSX-ray3.40J3-100[»]
ProteinModelPortaliQ5SHN7.
SMRiQ5SHN7. Positions 3-100.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHN7.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S10P family.Curated

Phylogenomic databases

eggNOGiCOG0051.
HOGENOMiHOG000270246.
KOiK02946.
OMAiKIRRYTV.
OrthoDBiEOG6VXFHB.
PhylomeDBiQ5SHN7.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SHN7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI
60 70 80 90 100
RGPFKHKDSR EHFELRTHNR LVDIINPNRK TIEQLMTLDL PTGVEIEIKT

VGGGR
Length:105
Mass (Da):11,930
Last modified:January 23, 2007 - v3
Checksum:iE769CB9EFE2C4EF4
GO

Mass spectrometryi

Molecular mass is 11799 Da from positions 2 - 105. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U36504 Genomic DNA. Translation: AAA97863.1.
AP008226 Genomic DNA. Translation: BAD71516.1.
PIRiS10249. R3TW12.
RefSeqiYP_144959.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71516; BAD71516; BAD71516.
GeneIDi3167932.
KEGGittj:TTHA1693.
PATRICi23958341. VBITheThe93045_1663.

Cross-referencesi

Web resourcesi

T.thermophilus ribosome structure and function

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U36504 Genomic DNA. Translation: AAA97863.1.
AP008226 Genomic DNA. Translation: BAD71516.1.
PIRiS10249. R3TW12.
RefSeqiYP_144959.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00J1-105[»]
1HNWX-ray3.40J1-105[»]
1HNXX-ray3.40J1-105[»]
1HNZX-ray3.30J1-105[»]
1HR0X-ray3.20J1-105[»]
1I94X-ray3.20J2-105[»]
1I95X-ray4.50J2-105[»]
1I96X-ray4.20J2-105[»]
1I97X-ray4.50J2-105[»]
1IBKX-ray3.31J1-105[»]
1IBLX-ray3.11J1-105[»]
1IBMX-ray3.31J1-105[»]
1J5EX-ray3.05J2-105[»]
1JGOX-ray5.60M1-105[»]
1JGPX-ray7.00M1-105[»]
1JGQX-ray5.00M1-105[»]
1L1Umodel-J3-100[»]
1ML5electron microscopy14.00M1-105[»]
1N32X-ray3.00J2-105[»]
1N33X-ray3.35J2-105[»]
1N34X-ray3.80J2-105[»]
1N36X-ray3.65J2-105[»]
1VVJX-ray3.44QJ/XJ1-105[»]
1VY4X-ray2.60AJ/CJ1-105[»]
1VY5X-ray2.55AJ/CJ1-105[»]
1VY6X-ray2.90AJ/CJ1-105[»]
1VY7X-ray2.80AJ/CJ1-105[»]
1XMOX-ray3.25J1-105[»]
1XMQX-ray3.00J1-105[»]
1XNQX-ray3.05J1-105[»]
1XNRX-ray3.10J1-105[»]
2E5LX-ray3.30J2-105[»]
2F4VX-ray3.80J1-105[»]
2HHHX-ray3.35J1-105[»]
2UU9X-ray3.10J2-105[»]
2UUAX-ray2.90J2-105[»]
2UUBX-ray2.80J2-105[»]
2UUCX-ray3.10J2-105[»]
2UXBX-ray3.10J2-105[»]
2UXCX-ray2.90J2-105[»]
2UXDX-ray3.20J2-105[»]
2VQEX-ray2.50J1-105[»]
2VQFX-ray2.90J1-105[»]
2ZM6X-ray3.30J2-105[»]
3OTOX-ray3.69J1-105[»]
3T1HX-ray3.11J1-105[»]
3T1YX-ray2.80J1-105[»]
4AQYX-ray3.50J2-105[»]
4B3MX-ray2.90J2-105[»]
4B3RX-ray3.00J2-105[»]
4B3SX-ray3.15J2-105[»]
4B3TX-ray3.00J2-105[»]
4DR1X-ray3.60J1-105[»]
4DR2X-ray3.25J1-105[»]
4DR3X-ray3.35J1-105[»]
4DR4X-ray3.97J1-105[»]
4DR5X-ray3.45J1-105[»]
4DR6X-ray3.30J1-105[»]
4DR7X-ray3.75J1-105[»]
4DUYX-ray3.39J1-105[»]
4DUZX-ray3.65J1-105[»]
4DV0X-ray3.85J1-105[»]
4DV1X-ray3.85J1-105[»]
4DV2X-ray3.65J1-105[»]
4DV3X-ray3.55J1-105[»]
4DV4X-ray3.65J1-105[»]
4DV5X-ray3.68J1-105[»]
4DV6X-ray3.30J1-105[»]
4DV7X-ray3.29J1-105[»]
4GKJX-ray3.30J3-100[»]
4GKKX-ray3.20J3-100[»]
4JI0X-ray3.49J1-105[»]
4JI1X-ray3.14J1-105[»]
4JI2X-ray3.64J1-105[»]
4JI3X-ray3.35J1-105[»]
4JI4X-ray3.69J1-105[»]
4JI5X-ray3.85J1-105[»]
4JI6X-ray3.55J1-105[»]
4JI7X-ray3.50J1-105[»]
4JI8X-ray3.74J1-105[»]
4JV5X-ray3.16J3-100[»]
4JYAX-ray3.10J3-100[»]
4K0KX-ray3.40J3-101[»]
4KHPX-ray3.10J3-100[»]
4L47X-ray3.22QJ/XJ1-105[»]
4L71X-ray3.90QJ/XJ1-105[»]
4LELX-ray3.90QJ/XJ1-105[»]
4LF4X-ray3.34J1-105[»]
4LF5X-ray3.75J1-105[»]
4LF6X-ray3.31J1-105[»]
4LF7X-ray3.15J1-105[»]
4LF8X-ray3.15J1-105[»]
4LF9X-ray3.28J1-105[»]
4LFAX-ray3.65J1-105[»]
4LFBX-ray3.01J1-105[»]
4LFCX-ray3.60J1-105[»]
4LFZX-ray3.92QJ/XJ1-105[»]
4LNTX-ray2.94QJ/XJ1-105[»]
4LSKX-ray3.48QJ/XJ1-105[»]
4LT8X-ray3.14QJ/XJ1-105[»]
4NXMX-ray3.65J1-105[»]
4NXNX-ray3.54J1-105[»]
4OX9X-ray3.80J2-105[»]
4P6FX-ray3.60QJ/XJ1-105[»]
4P70X-ray3.68QJ/XJ1-105[»]
4V42X-ray5.50AM1-105[»]
4V49X-ray8.70J3-100[»]
4V4AX-ray9.50J3-100[»]
4V4IX-ray3.71k-[»]
4V4PX-ray5.50BM1-105[»]
4V4RX-ray5.90J1-105[»]
4V4SX-ray6.76J1-105[»]
4V4TX-ray6.46J1-105[»]
4V4XX-ray5.00AM1-105[»]
4V4YX-ray5.50M1-105[»]
4V4ZX-ray4.51M1-105[»]
4V51X-ray2.80AJ/CJ2-105[»]
4V5AX-ray3.50AJ/CJ2-105[»]
4V5CX-ray3.30AJ/CJ1-105[»]
4V5DX-ray3.50AJ/CJ1-105[»]
4V5EX-ray3.45AJ/CJ1-105[»]
4V5FX-ray3.60AJ/CJ1-105[»]
4V5GX-ray3.60AJ/CJ1-105[»]
4V5JX-ray3.10AJ/CJ1-105[»]
4V5KX-ray3.20AJ/CJ1-105[»]
4V5LX-ray3.10J1-105[»]
4V5Melectron microscopy7.80AJ1-105[»]
4V5Nelectron microscopy7.60AJ1-105[»]
4V5PX-ray3.10AJ/CJ1-105[»]
4V5QX-ray3.10AJ/CJ1-105[»]
4V5RX-ray3.10AJ/CJ1-105[»]
4V5SX-ray3.10AJ/CJ1-105[»]
4V68electron microscopy6.40AJ3-101[»]
4V6AX-ray3.10AJ/CJ1-105[»]
4V6FX-ray3.10BM/CM1-105[»]
4V6GX-ray3.50AM/CM1-105[»]
4V7JX-ray3.30Aj/Bj1-105[»]
4V7KX-ray3.60Aj/Bj1-105[»]
4V7LX-ray3.00AJ/CJ1-105[»]
4V7MX-ray3.45AJ/CJ1-105[»]
4V7WX-ray3.00AJ/CJ1-105[»]
4V7XX-ray3.00AJ/CJ1-105[»]
4V7YX-ray3.00AJ/CJ1-105[»]
4V7ZX-ray3.10AJ/CJ1-105[»]
4V87X-ray3.10BM/CM1-105[»]
4V8AX-ray3.20CJ/DJ1-105[»]
4V8BX-ray3.00AM/CM1-105[»]
4V8CX-ray3.30CM/DM1-105[»]
4V8DX-ray3.00AM/CM1-105[»]
4V8EX-ray3.30BM/DM1-105[»]
4V8FX-ray3.30BM/CM1-105[»]
4V8GX-ray3.00AJ/CJ1-105[»]
4V8HX-ray3.10AJ/CJ1-105[»]
4V8IX-ray2.70AJ/CJ1-105[»]
4V8JX-ray3.90AJ/CJ1-105[»]
4V8NX-ray3.10AJ/CJ1-105[»]
4V8OX-ray3.80AJ1-105[»]
4V8QX-ray3.10BJ1-105[»]
4V8UX-ray3.70AJ/CJ1-105[»]
4V8XX-ray3.35AJ/CJ1-105[»]
4V90X-ray2.95AJ1-105[»]
4V95X-ray3.20AJ/CJ1-105[»]
4V97X-ray3.52AJ/CJ1-105[»]
4V9AX-ray3.30AM/CM1-105[»]
4V9BX-ray3.10AM/CM1-105[»]
4V9HX-ray2.86AJ3-100[»]
4V9IX-ray3.30AJ/CJ3-100[»]
4V9RX-ray3.00AJ/CJ1-105[»]
4V9SX-ray3.10AJ/CJ1-105[»]
4W2EX-ray2.90j1-105[»]
4W2FX-ray2.40AJ/CJ1-105[»]
4W2GX-ray2.55AJ/CJ1-105[»]
4W2HX-ray2.70AJ/CJ1-105[»]
4W2IX-ray2.70AJ/CJ1-105[»]
4WPOX-ray2.80BJ/DJ1-105[»]
4WQFX-ray2.80BJ/DJ1-105[»]
4WQUX-ray2.80BJ/DJ1-105[»]
4WQYX-ray2.80BJ/DJ1-105[»]
4WT8X-ray3.40J3-100[»]
4WUSX-ray3.40J3-100[»]
ProteinModelPortaliQ5SHN7.
SMRiQ5SHN7. Positions 3-100.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA1693.

Chemistry

DrugBankiDB01421. Paromomycin.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD71516; BAD71516; BAD71516.
GeneIDi3167932.
KEGGittj:TTHA1693.
PATRICi23958341. VBITheThe93045_1663.

Phylogenomic databases

eggNOGiCOG0051.
HOGENOMiHOG000270246.
KOiK02946.
OMAiKIRRYTV.
OrthoDBiEOG6VXFHB.
PhylomeDBiQ5SHN7.

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1732-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ5SHN7.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Direct linkage of str-, S10- and spc-related gene clusters in Thermus thermophilus HB8, and sequences of ribosomal proteins L4 and S10."
    Pfeiffer T., Jorcke D., Feltens R., Hartmann R.K.
    Gene 167:141-145(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  3. "Purification and characterization of the 30S ribosomal proteins from the bacterium Thermus thermophilus."
    Tsiboli P., Herfurth E., Choli T.
    Eur. J. Biochem. 226:169-177(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-33.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  5. Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.
  6. "Structure of functionally activated small ribosomal subunit at 3.3 A resolution."
    Schluenzen F., Tocilj A., Zarivach R., Harms J., Gluehmann M., Janell D., Bashan A., Bartels H., Agmon I., Franceschi F., Yonath A.
    Cell 102:615-623(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
  7. "The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit."
    Brodersen D.E., Clemons W.M. Jr., Carter A.P., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
    Cell 103:1143-1154(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
  8. "Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics."
    Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
    Nature 407:340-348(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 30S SUBUNIT.
  9. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
  10. "Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3."
    Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F.
    EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
  11. "Crystal structure of an initiation factor bound to the 30S ribosomal subunit."
    Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Hartsch T., Wimberly B.T., Ramakrishnan V.
    Science 291:498-501(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
  12. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
  13. "Recognition of cognate transfer RNA by the 30S ribosomal subunit."
    Ogle J.M., Brodersen D.E., Clemons W.M. Jr., Tarry M.J., Carter A.P., Ramakrishnan V.
    Science 292:897-902(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.11 ANGSTROMS) OF THE 30S SUBUNIT.
  14. "Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16S RNA."
    Brodersen D.E., Clemons W.M. Jr., Carter A.P., Wimberly B.T., Ramakrishnan V.
    J. Mol. Biol. 316:725-768(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.

Entry informationi

Entry nameiRS10_THET8
AccessioniPrimary (citable) accession number: Q5SHN7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: April 29, 2015
This is version 101 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.