30S ribosomal protein S10 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

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Q5SHN7 (RS10_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 83. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
30S ribosomal protein S10

Gene names

Name:	rpsJ
Ordered Locus Names:	TTHA1693

Organism

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]

Taxonomic identifier

300852 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length	105 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Part of the top of the 30S subunit head. HAMAP-Rule MF_00508
Subunit structure	Part of the 30S ribosomal subunit. Forms a tight complex with proteins S3 and S14. Also contacts protein S9. Ref.5 Ref.6 Ref.7 Ref.8 Ref.10 Ref.11 Ref.13 Ref.14
Sequence similarities	Belongs to the ribosomal protein S10P family.
Mass spectrometry	Molecular mass is 11799 Da from positions 2 - 105. Determined by MALDI. Ref.4

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome Direct protein sequencing Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Initiator methionine

Removed Ref.3

Chain

2 – 105

104

30S ribosomal protein S10 HAMAP-Rule MF_00508

PRO_0000146620

Secondary structure

105

Helix Strand Turn

Details...

Sequences

Sequence

Length

Mass (Da)

Tools

Q5SHN7 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: E769CB9EFE2C4EF4
Show »

FASTA

105

11,930

        10         20         30         40         50         60 
MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI RGPFKHKDSR 

        70         80         90        100 
EHFELRTHNR LVDIINPNRK TIEQLMTLDL PTGVEIEIKT VGGGR

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Direct linkage of str-, S10- and spc-related gene clusters in Thermus thermophilus HB8, and sequences of ribosomal proteins L4 and S10." Pfeiffer T., Jorcke D., Feltens R., Hartmann R.K. Gene 167:141-145(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"Complete genome sequence of Thermus thermophilus HB8." Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S. Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HB8 / ATCC 27634 / DSM 579.
[3]	"Purification and characterization of the 30S ribosomal proteins from the bacterium Thermus thermophilus." Tsiboli P., Herfurth E., Choli T. Eur. J. Biochem. 226:169-177(1994) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 2-33.
[4]	"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry." Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A. Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract] Cited for: MASS SPECTROMETRY.
[5]	"Structure of the 30S ribosomal subunit." Wimberly B.T., Brodersen D.E., Clemons W.M. Jr., Morgan-Warren R.J., Carter A.P., Vonrhein C., Hartsch T., Ramakrishnan V. Nature 407:327-339(2000) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.
[6]	"Structure of functionally activated small ribosomal subunit at 3.3 A resolution." Schluenzen F., Tocilj A., Zarivach R., Harms J., Gluehmann M., Janell D., Bashan A., Bartels H., Agmon I., Franceschi F., Yonath A. Cell 102:615-623(2000) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
[7]	"The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit." Brodersen D.E., Clemons W.M. Jr., Carter A.P., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V. Cell 103:1143-1154(2000) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
[8]	"Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics." Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V. Nature 407:340-348(2000) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 30S SUBUNIT.
[9]	"The path of messenger RNA through the ribosome." Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F. Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (5.0 ANGSTROMS) OF THE RIBOSOME.
[10]	"Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3." Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F. EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
[11]	"Crystal structure of an initiation factor bound to the 30S ribosomal subunit." Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Hartsch T., Wimberly B.T., Ramakrishnan V. Science 291:498-501(2001) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
[12]	"Crystal structure of the ribosome at 5.5 A resolution." Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F. Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
[13]	"Recognition of cognate transfer RNA by the 30S ribosomal subunit." Ogle J.M., Brodersen D.E., Clemons W.M. Jr., Tarry M.J., Carter A.P., Ramakrishnan V. Science 292:897-902(2001) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.11 ANGSTROMS) OF THE 30S SUBUNIT.
[14]	"Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16S RNA." Brodersen D.E., Clemons W.M. Jr., Carter A.P., Wimberly B.T., Ramakrishnan V. J. Mol. Biol. 316:725-768(2002) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.
+	Additional computationally mapped references.

Web resources

T.thermophilus ribosome structure and function

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

U36504 Genomic DNA. Translation: AAA97863.1.
AP008226 Genomic DNA. Translation: BAD71516.1.

PIR

R3TW12. S10249.

RefSeq

YP_144959.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1FJG	X-ray	3.00	J	1-105	[»]
1GIX	X-ray	5.50	M	1-105	[»]
1HNW	X-ray	3.40	J	1-105	[»]
1HNX	X-ray	3.40	J	1-105	[»]
1HNZ	X-ray	3.30	J	1-105	[»]
1HR0	X-ray	3.20	J	1-105	[»]
1I94	X-ray	3.20	J	2-105	[»]
1I95	X-ray	4.50	J	2-105	[»]
1I96	X-ray	4.20	J	2-105	[»]
1I97	X-ray	4.50	J	2-105	[»]
1IBK	X-ray	3.31	J	1-105	[»]
1IBL	X-ray	3.11	J	1-105	[»]
1IBM	X-ray	3.31	J	1-105	[»]
1J5E	X-ray	3.05	J	2-105	[»]
1JGO	X-ray	5.60	M	1-105	[»]
1JGP	X-ray	7.00	M	1-105	[»]
1JGQ	X-ray	5.00	M	1-105	[»]
1L1U	model	-	J	3-100	[»]
1N32	X-ray	3.00	J	2-105	[»]
1N33	X-ray	3.35	J	2-105	[»]
1N34	X-ray	3.80	J	2-105	[»]
1N36	X-ray	3.65	J	2-105	[»]
1XMO	X-ray	3.25	J	1-105	[»]
1XMQ	X-ray	3.00	J	1-105	[»]
1XNQ	X-ray	3.05	J	1-105	[»]
1XNR	X-ray	3.10	J	1-105	[»]
1YL4	X-ray	5.50	M	1-105	[»]
2B64	X-ray	5.90	J	1-105	[»]
2B9M	X-ray	6.76	J	1-105	[»]
2B9O	X-ray	6.46	J	1-105	[»]
2E5L	X-ray	3.30	J	2-105	[»]
2F4V	X-ray	3.80	J	1-105	[»]
2HGI	X-ray	5.00	M	1-105	[»]
2HGP	X-ray	5.50	M	1-105	[»]
2HGR	X-ray	4.51	M	1-105	[»]
2HHH	X-ray	3.35	J	1-105	[»]
2J00	X-ray	2.80	J	2-104	[»]
2J02	X-ray	2.80	J	2-104	[»]
2OW8	X-ray	3.71	k	-	[»]
2UU9	X-ray	3.10	J	2-104	[»]
2UUA	X-ray	2.90	J	1-105	[»]
2UUB	X-ray	2.90	J	2-104	[»]
2UUC	X-ray	3.10	J	2-104	[»]
2UXB	X-ray	3.10	J	1-105	[»]
2UXC	X-ray	2.90	J	1-105	[»]
2UXD	X-ray	3.20	J	1-105	[»]
2V46	X-ray	3.80	J	2-104	[»]
2V48	X-ray	3.50	J	1-105	[»]
2VQE	X-ray	2.50	J	1-105	[»]
2VQF	X-ray	2.90	J	1-105	[»]
2WDG	X-ray	3.30	J	1-105	[»]
2WDH	X-ray	3.30	J	1-105	[»]
2WDK	X-ray	3.50	J	1-105	[»]
2WDM	X-ray	3.50	J	1-105	[»]
2WH1	X-ray	3.45	J	1-105	[»]
2WH3	X-ray	3.45	J	1-105	[»]
2WRI	X-ray	3.60	J	1-105	[»]
2WRK	X-ray	3.60	J	1-105	[»]
2WRN	X-ray	3.60	J	1-105	[»]
2WRQ	X-ray	3.60	J	1-105	[»]
2X9R	X-ray	3.10	J	1-105	[»]
2X9T	X-ray	3.10	J	1-105	[»]
2XFZ	X-ray	3.20	J	1-105	[»]
2XG1	X-ray	3.20	J	1-105	[»]
2XQD	X-ray	3.10	J	1-105	[»]
2XSY	electron microscopy	7.80	J	1-105	[»]
2XUY	electron microscopy	7.60	J	1-105	[»]
2Y0U	X-ray	3.10	J	1-105	[»]
2Y0W	X-ray	3.10	J	1-105	[»]
2Y0Y	X-ray	3.10	J	1-105	[»]
2Y10	X-ray	3.10	J	1-105	[»]
2Y12	X-ray	3.10	J	1-105	[»]
2Y14	X-ray	3.10	J	1-105	[»]
2Y16	X-ray	3.10	J	1-105	[»]
2Y18	X-ray	3.10	J	1-105	[»]
2ZM6	X-ray	3.30	J	2-105	[»]
3FIC	electron microscopy	6.40	J	3-101	[»]
3HUW	X-ray	3.10	J	1-105	[»]
3HUY	X-ray	3.10	J	1-105	[»]
3I8G	X-ray	3.10	M	1-105	[»]
3I8H	X-ray	3.10	M	1-105	[»]
3I9B	X-ray	3.50	M	1-105	[»]
3I9D	X-ray	3.50	M	1-105	[»]
3KIQ	X-ray	3.30	j	1-105	[»]
3KIS	X-ray	3.30	j	1-105	[»]
3KIU	X-ray	3.60	j	1-105	[»]
3KIX	X-ray	3.60	j	1-105	[»]
3KNH	X-ray	3.00	J	1-105	[»]
3KNJ	X-ray	3.15	J	1-105	[»]
3KNL	X-ray	3.45	J	1-105	[»]
3KNN	X-ray	3.45	J	1-105	[»]
3OGE	X-ray	3.00	J	1-105	[»]
3OGY	X-ray	3.00	J	1-105	[»]
3OHC	X-ray	3.00	J	1-105	[»]
3OHD	X-ray	3.00	J	1-105	[»]
3OHY	X-ray	3.00	J	1-105	[»]
3OI0	X-ray	3.00	J	1-105	[»]
3OI2	X-ray	3.10	J	1-105	[»]
3OI4	X-ray	3.10	J	1-105	[»]
3OTO	X-ray	3.69	J	1-105	[»]
3T1H	X-ray	3.11	J	1-105	[»]
3T1Y	X-ray	2.80	J	1-105	[»]
3TVF	X-ray	3.10	M	1-105	[»]
3TVG	X-ray	3.10	M	1-105	[»]
3UXS	X-ray	3.20	J	1-105	[»]
3UXT	X-ray	3.20	J	1-105	[»]
3UYD	X-ray	3.00	M	1-105	[»]
3UYF	X-ray	3.00	M	1-105	[»]
3UZ3	X-ray	3.30	M	1-105	[»]
3UZ4	X-ray	3.30	M	1-105	[»]
3UZ6	X-ray	3.00	M	1-105	[»]
3UZ7	X-ray	3.00	M	1-105	[»]
3UZG	X-ray	3.30	M	1-105	[»]
3UZI	X-ray	3.30	M	1-105	[»]
3UZL	X-ray	3.30	M	1-105	[»]
3UZM	X-ray	3.30	M	1-105	[»]
3V22	X-ray	3.00	J	1-105	[»]
3V24	X-ray	3.00	J	1-105	[»]
3V26	X-ray	3.10	J	1-105	[»]
3V28	X-ray	3.10	J	1-105	[»]
3V2C	X-ray	2.70	J	1-105	[»]
3V2E	X-ray	2.70	J	1-105	[»]
3ZVO	X-ray	3.80	J	1-105	[»]
4ABR	X-ray	3.10	J	1-105	[»]
4AQY	X-ray	3.50	J	2-105	[»]
4DH9	X-ray	3.20	J	1-105	[»]
4DHB	X-ray	3.20	J	1-105	[»]
4DR1	X-ray	3.60	J	1-105	[»]
4DR2	X-ray	3.25	J	1-105	[»]
4DR3	X-ray	3.35	J	1-105	[»]
4DR4	X-ray	3.97	J	1-105	[»]
4DR5	X-ray	3.45	J	1-105	[»]
4DR6	X-ray	3.30	J	1-105	[»]
4DR7	X-ray	3.75	J	1-105	[»]
4DUY	X-ray	3.39	J	1-105	[»]
4DUZ	X-ray	3.65	J	1-105	[»]
4DV0	X-ray	3.85	J	1-105	[»]
4DV1	X-ray	3.85	J	1-105	[»]
4DV2	X-ray	3.65	J	1-105	[»]
4DV3	X-ray	3.55	J	1-105	[»]
4DV4	X-ray	3.65	J	1-105	[»]
4DV5	X-ray	3.68	J	1-105	[»]
4DV6	X-ray	3.30	J	1-105	[»]
4DV7	X-ray	3.29	J	1-105	[»]
4G5K	X-ray	3.30	M	1-105	[»]
4G5M	X-ray	3.30	M	1-105	[»]
4G5T	X-ray	3.10	M	1-105	[»]
4G5V	X-ray	3.10	M	1-105	[»]

ProteinModelPortal

Q5SHN7.

SMR

Q5SHN7. Positions 3-100.

ModBase

Search...

Protein-protein interaction databases

STRING

300852.TTHA1693.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

BAD71516; BAD71516; BAD71516.

GeneID

3167932.

KEGG

ttj:TTHA1693.

PATRIC

23958341. VBITheThe93045_1663.

Phylogenomic databases

eggNOG

COG0051.

HOGENOM

HOG000270246.

K02946.

OMA

QQKIRIK.

ProtClustDB

PRK00596.

Family and domain databases

Gene3D

3.30.70.600. 1 hit.

HAMAP

MF_00508. Ribosomal_S10.

InterPro

IPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
[Graphical view]

PANTHER

PTHR11700. PTHR11700. 1 hit.

Pfam

PF00338. Ribosomal_S10. 1 hit.
[Graphical view]

PRINTS

PR00971. RIBOSOMALS10.

SUPFAM

SSF54999. Ribosomal_S10. 1 hit.

TIGRFAMs

TIGR01049. rpsJ_bact. 1 hit.

PROSITE

PS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

Q5SHN7.

Entry information

Entry name

RS10_THET8

Accession

Primary (citable) accession number: Q5SHN7

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 29, 2005
Last sequence update:	January 23, 2007
Last modified:	May 1, 2013
This is version 83 of the entry and version 3 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Secondary structure

Sequences

References

Web resources

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Other

Entry information

Relevant documents