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Q5SHN3

- RS12_THET8

UniProt

Q5SHN3 - RS12_THET8

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Protein

30S ribosomal protein S12

Gene

rpsL

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli

Functioni

With S4 and S5 plays an important role in translational accuracy.By similarity
Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1736-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S12
Gene namesi
Name:rpsL
Ordered Locus Names:TTHA1697
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. small ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 13213130S ribosomal protein S12PRO_0000146341Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei89 – 8913-methylthioaspartic acid1 Publication

Keywords - PTMi

Methylation

Proteomic databases

PRIDEiQ5SHN3.

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S8 and S17. May interact with IF1 in the 30S initiation complex.

Protein-protein interaction databases

STRINGi300852.TTHA1697.

Structurei

Secondary structure

1
132
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi4 – 96
Beta strandi24 – 263
Beta strandi28 – 358
Beta strandi43 – 453
Beta strandi50 – 523
Beta strandi54 – 574
Turni58 – 603
Beta strandi62 – 665
Beta strandi69 – 713
Beta strandi79 – 846
Beta strandi90 – 923
Beta strandi95 – 973
Turni101 – 1044
Helixi114 – 1174
Helixi123 – 1253
Beta strandi128 – 1303

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00L2-132[»]
1GIXX-ray5.50O2-132[»]
1HNWX-ray3.40L2-132[»]
1HNXX-ray3.40L2-132[»]
1HNZX-ray3.30L2-132[»]
1HR0X-ray3.20L2-132[»]
1I94X-ray3.20L2-132[»]
1I95X-ray4.50L2-132[»]
1I96X-ray4.20L2-132[»]
1I97X-ray4.50L2-132[»]
1IBKX-ray3.31L2-132[»]
1IBLX-ray3.11L2-132[»]
1IBMX-ray3.31L2-132[»]
1J5EX-ray3.05L2-132[»]
1JGOX-ray5.60O2-132[»]
1JGPX-ray7.00O2-132[»]
1JGQX-ray5.00O2-132[»]
1L1Umodel-L1-125[»]
1ML5electron microscopy14.00O2-132[»]
1MVRelectron microscopy12.80O2-132[»]
1N32X-ray3.00L2-132[»]
1N33X-ray3.35L2-132[»]
1N34X-ray3.80L2-132[»]
1N36X-ray3.65L2-132[»]
1PN7electron microscopy10.80O2-125[»]
1PN8electron microscopy10.80O2-125[»]
1PNSX-ray8.70L2-125[»]
1PNXX-ray9.50L2-125[»]
1QZCelectron microscopy9.00L2-132[»]
1VVLX-ray3.22L1-132[»]
1VVNX-ray3.22L1-132[»]
1VVPX-ray3.90L1-132[»]
1VVRX-ray3.90L1-132[»]
1VVTX-ray3.90L1-132[»]
1VVVX-ray3.90L1-132[»]
1VVXX-ray3.92L1-132[»]
1VVZX-ray3.92L1-132[»]
1VX8X-ray2.94L1-132[»]
1VXIX-ray2.94L1-132[»]
1VXKX-ray3.48L1-132[»]
1VXMX-ray3.48L1-132[»]
1VXPX-ray3.14L1-132[»]
1VXSX-ray3.14L1-132[»]
1VY0X-ray3.68L1-132[»]
1VY2X-ray3.68L1-132[»]
1XMOX-ray3.25L2-132[»]
1XMQX-ray3.00L2-132[»]
1XNQX-ray3.05L2-132[»]
1XNRX-ray3.10L2-132[»]
1YL4X-ray5.50O2-132[»]
2B64X-ray5.90L2-132[»]
2B9MX-ray6.76L2-132[»]
2B9OX-ray6.46L2-132[»]
2E5LX-ray3.30L2-132[»]
2F4VX-ray3.80L1-132[»]
2HGIX-ray5.00O1-132[»]
2HGPX-ray5.50O1-132[»]
2HGRX-ray4.51O1-132[»]
2HHHX-ray3.35L2-132[»]
2J00X-ray2.80L2-131[»]
2J02X-ray2.80L2-132[»]
2OW8X-ray3.71m1-132[»]
2UU9X-ray3.10L2-132[»]
2UUAX-ray2.90L2-132[»]
2UUBX-ray2.80L2-132[»]
2UUCX-ray3.10L2-132[»]
2UXBX-ray3.10L2-132[»]
2UXCX-ray2.90L2-132[»]
2UXDX-ray3.20L2-132[»]
2V46X-ray3.50L2-132[»]
2V48X-ray3.50L2-132[»]
2VQEX-ray2.50L2-132[»]
2VQFX-ray2.90L2-132[»]
2WDGX-ray3.30L2-132[»]
2WDHX-ray3.30L2-132[»]
2WDKX-ray3.50L2-132[»]
2WDMX-ray3.50L2-132[»]
2WH1X-ray3.45L1-132[»]
2WH3X-ray3.45L1-132[»]
2WRIX-ray3.60L1-132[»]
2WRKX-ray3.60L1-132[»]
2WRNX-ray3.60L2-132[»]
2WRQX-ray3.60L2-132[»]
2X9RX-ray3.10L1-132[»]
2X9TX-ray3.10L1-132[»]
2XFZX-ray3.20L2-132[»]
2XG1X-ray3.20L2-132[»]
2XQDX-ray3.10L2-132[»]
2XSYelectron microscopy7.80L1-132[»]
2XUYelectron microscopy7.60L1-132[»]
2Y0UX-ray3.10L2-132[»]
2Y0WX-ray3.10L2-132[»]
2Y0YX-ray3.10L1-132[»]
2Y10X-ray3.10L2-132[»]
2Y12X-ray3.10L1-132[»]
2Y14X-ray3.10L2-132[»]
2Y16X-ray3.10L2-132[»]
2Y18X-ray3.10L2-132[»]
2ZM6X-ray3.30L2-132[»]
3FICelectron microscopy6.40L2-126[»]
3HUWX-ray3.10L1-132[»]
3HUYX-ray3.10L1-132[»]
3I8GX-ray3.10O1-132[»]
3I8HX-ray3.10O1-132[»]
3I9BX-ray3.50O1-132[»]
3I9DX-ray3.50O1-132[»]
3KIQX-ray3.30l1-132[»]
3KISX-ray3.30l1-132[»]
3KIUX-ray3.60l1-132[»]
3KIXX-ray3.60l1-132[»]
3KNHX-ray3.00L1-132[»]
3KNJX-ray3.15L1-132[»]
3KNLX-ray3.45L1-132[»]
3KNNX-ray3.45L1-132[»]
3OGEX-ray3.00L1-132[»]
3OGYX-ray3.00L1-132[»]
3OHCX-ray3.00L1-132[»]
3OHDX-ray3.00L1-132[»]
3OHYX-ray3.00L1-132[»]
3OI0X-ray3.00L1-132[»]
3OI2X-ray3.10L1-132[»]
3OI4X-ray3.10L1-132[»]
3OTOX-ray3.69L2-132[»]
3T1HX-ray3.11L1-132[»]
3T1YX-ray2.80L1-132[»]
3TVFX-ray3.10O1-132[»]
3TVGX-ray3.10O1-132[»]
3UXSX-ray3.20L1-132[»]
3UXTX-ray3.20L1-132[»]
3UYDX-ray3.00O1-128[»]
3UYFX-ray3.00O1-128[»]
3UZ3X-ray3.30O1-132[»]
3UZ4X-ray3.30O1-132[»]
3UZ6X-ray3.00O1-132[»]
3UZ7X-ray3.00O1-132[»]
3UZGX-ray3.30O1-132[»]
3UZIX-ray3.30O1-132[»]
3UZLX-ray3.30O1-128[»]
3UZMX-ray3.30O1-128[»]
3V22X-ray3.00L1-132[»]
3V24X-ray3.00L1-132[»]
3V26X-ray3.10L1-132[»]
3V28X-ray3.10L1-132[»]
3V2CX-ray2.70L1-132[»]
3V2EX-ray2.70L1-132[»]
3V6UX-ray3.90L1-132[»]
3V6VX-ray3.90L1-132[»]
3ZN7X-ray3.10L2-132[»]
3ZNDX-ray3.10L2-132[»]
3ZVOX-ray3.80L2-132[»]
4ABRX-ray3.10L2-132[»]
4AQYX-ray3.50L2-132[»]
4B3MX-ray2.90L1-132[»]
4B3RX-ray3.00L1-132[»]
4B3SX-ray3.15L1-132[»]
4B3TX-ray3.00L1-132[»]
4B8FX-ray3.70L1-132[»]
4B8HX-ray3.70L1-132[»]
4BYDX-ray3.35L1-132[»]
4CR1X-ray2.95L1-132[»]
4DH9X-ray3.20L1-132[»]
4DHBX-ray3.20L1-132[»]
4DUYX-ray3.39L2-132[»]
4DUZX-ray3.65L2-132[»]
4DV0X-ray3.85L2-132[»]
4DV1X-ray3.85L2-132[»]
4DV2X-ray3.65L2-132[»]
4DV3X-ray3.55L2-132[»]
4DV4X-ray3.65L2-132[»]
4DV5X-ray3.68L2-132[»]
4DV6X-ray3.30L2-132[»]
4DV7X-ray3.29L2-132[»]
4EJ9X-ray3.52L1-132[»]
4EJAX-ray3.52L1-132[»]
4G5KX-ray3.30O1-127[»]
4G5MX-ray3.30O1-127[»]
4G5TX-ray3.10O1-127[»]
4G5VX-ray3.10O1-127[»]
4GKJX-ray3.30L2-125[»]
4GKKX-ray3.20L2-125[»]
4JI0X-ray3.49L2-132[»]
4JI1X-ray3.14L2-132[»]
4JI2X-ray3.64L2-132[»]
4JI3X-ray3.35L2-132[»]
4JI4X-ray3.69L2-132[»]
4JI5X-ray3.85L2-132[»]
4JI6X-ray3.55L2-132[»]
4JI7X-ray3.50L2-132[»]
4JI8X-ray3.74L2-132[»]
4JUWX-ray2.86L2-125[»]
4JV5X-ray3.16L2-126[»]
4JYAX-ray3.10L2-126[»]
4K0KX-ray3.40L2-127[»]
4K0LX-ray3.30L2-125[»]
4K0PX-ray3.30L2-125[»]
4KHPX-ray3.10L2-126[»]
4KWZX-ray3.44L1-132[»]
4KX1X-ray3.44L1-132[»]
4NVUX-ray3.00L1-132[»]
4NVWX-ray3.00L1-132[»]
4NVYX-ray3.10L1-132[»]
4NW0X-ray3.10L1-132[»]
4OX9X-ray3.80L1-131[»]
4QCMX-ray2.60L1-132[»]
4QCOX-ray2.60L1-132[»]
4QCQX-ray2.55L1-132[»]
4QCSX-ray2.55L1-132[»]
4QCUX-ray2.90L1-132[»]
4QCWX-ray2.90L1-132[»]
4QCYX-ray2.80L1-132[»]
4QD0X-ray2.80L1-132[»]
ProteinModelPortaliQ5SHN3.
SMRiQ5SHN3. Positions 2-126.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHN3.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S12P family.Curated

Phylogenomic databases

eggNOGiCOG0048.
HOGENOMiHOG000040063.
KOiK02950.
OMAiPALQWGY.
OrthoDBiEOG61ZTNF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_00403_B. Ribosomal_S12_B.
InterProiIPR012340. NA-bd_OB-fold.
IPR006032. Ribosomal_S12/S23.
IPR005679. Ribosomal_S12_bac.
[Graphical view]
PANTHERiPTHR11652. PTHR11652. 1 hit.
PfamiPF00164. Ribosom_S12_S23. 1 hit.
[Graphical view]
PIRSFiPIRSF002133. Ribosomal_S12/S23. 1 hit.
PRINTSiPR01034. RIBOSOMALS12.
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00981. rpsL_bact. 1 hit.
PROSITEiPS00055. RIBOSOMAL_S12. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SHN3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPTINQLVRK GREKVRKKSK VPALKGAPFR RGVCTVVRTV TPKKPNSALR
60 70 80 90 100
KVAKVRLTSG YEVTAYIPGE GHNLQEHSVV LIRGGRVKDL PGVRYHIVRG
110 120 130
VYDAAGVKDR KKSRSKYGTK KPKEAAKTAA KK
Length:132
Mass (Da):14,599
Last modified:January 23, 2007 - v3
Checksum:i9943D095FAD4D9BC
GO

Sequence cautioni

The sequence BAD71520.1 differs from that shown. Reason: Erroneous initiation.
The sequence CAA36418.1 differs from that shown. Reason: Erroneous initiation.

Mass spectrometryi

Molecular mass is 14516 Da from positions 2 - 132. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X52165 Genomic DNA. Translation: CAA36418.1. Different initiation.
AP008226 Genomic DNA. Translation: BAD71520.1. Different initiation.
PIRiS10249. R3TW12.
RefSeqiYP_144963.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71520; BAD71520; BAD71520.
GeneIDi3169892.
KEGGittj:TTHA1697.
PATRICi23958349. VBITheThe93045_1667.

Cross-referencesi

Web resourcesi

T.thermophilus ribosome structure and function

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X52165 Genomic DNA. Translation: CAA36418.1 . Different initiation.
AP008226 Genomic DNA. Translation: BAD71520.1 . Different initiation.
PIRi S10249. R3TW12.
RefSeqi YP_144963.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1FJG X-ray 3.00 L 2-132 [» ]
1GIX X-ray 5.50 O 2-132 [» ]
1HNW X-ray 3.40 L 2-132 [» ]
1HNX X-ray 3.40 L 2-132 [» ]
1HNZ X-ray 3.30 L 2-132 [» ]
1HR0 X-ray 3.20 L 2-132 [» ]
1I94 X-ray 3.20 L 2-132 [» ]
1I95 X-ray 4.50 L 2-132 [» ]
1I96 X-ray 4.20 L 2-132 [» ]
1I97 X-ray 4.50 L 2-132 [» ]
1IBK X-ray 3.31 L 2-132 [» ]
1IBL X-ray 3.11 L 2-132 [» ]
1IBM X-ray 3.31 L 2-132 [» ]
1J5E X-ray 3.05 L 2-132 [» ]
1JGO X-ray 5.60 O 2-132 [» ]
1JGP X-ray 7.00 O 2-132 [» ]
1JGQ X-ray 5.00 O 2-132 [» ]
1L1U model - L 1-125 [» ]
1ML5 electron microscopy 14.00 O 2-132 [» ]
1MVR electron microscopy 12.80 O 2-132 [» ]
1N32 X-ray 3.00 L 2-132 [» ]
1N33 X-ray 3.35 L 2-132 [» ]
1N34 X-ray 3.80 L 2-132 [» ]
1N36 X-ray 3.65 L 2-132 [» ]
1PN7 electron microscopy 10.80 O 2-125 [» ]
1PN8 electron microscopy 10.80 O 2-125 [» ]
1PNS X-ray 8.70 L 2-125 [» ]
1PNX X-ray 9.50 L 2-125 [» ]
1QZC electron microscopy 9.00 L 2-132 [» ]
1VVL X-ray 3.22 L 1-132 [» ]
1VVN X-ray 3.22 L 1-132 [» ]
1VVP X-ray 3.90 L 1-132 [» ]
1VVR X-ray 3.90 L 1-132 [» ]
1VVT X-ray 3.90 L 1-132 [» ]
1VVV X-ray 3.90 L 1-132 [» ]
1VVX X-ray 3.92 L 1-132 [» ]
1VVZ X-ray 3.92 L 1-132 [» ]
1VX8 X-ray 2.94 L 1-132 [» ]
1VXI X-ray 2.94 L 1-132 [» ]
1VXK X-ray 3.48 L 1-132 [» ]
1VXM X-ray 3.48 L 1-132 [» ]
1VXP X-ray 3.14 L 1-132 [» ]
1VXS X-ray 3.14 L 1-132 [» ]
1VY0 X-ray 3.68 L 1-132 [» ]
1VY2 X-ray 3.68 L 1-132 [» ]
1XMO X-ray 3.25 L 2-132 [» ]
1XMQ X-ray 3.00 L 2-132 [» ]
1XNQ X-ray 3.05 L 2-132 [» ]
1XNR X-ray 3.10 L 2-132 [» ]
1YL4 X-ray 5.50 O 2-132 [» ]
2B64 X-ray 5.90 L 2-132 [» ]
2B9M X-ray 6.76 L 2-132 [» ]
2B9O X-ray 6.46 L 2-132 [» ]
2E5L X-ray 3.30 L 2-132 [» ]
2F4V X-ray 3.80 L 1-132 [» ]
2HGI X-ray 5.00 O 1-132 [» ]
2HGP X-ray 5.50 O 1-132 [» ]
2HGR X-ray 4.51 O 1-132 [» ]
2HHH X-ray 3.35 L 2-132 [» ]
2J00 X-ray 2.80 L 2-131 [» ]
2J02 X-ray 2.80 L 2-132 [» ]
2OW8 X-ray 3.71 m 1-132 [» ]
2UU9 X-ray 3.10 L 2-132 [» ]
2UUA X-ray 2.90 L 2-132 [» ]
2UUB X-ray 2.80 L 2-132 [» ]
2UUC X-ray 3.10 L 2-132 [» ]
2UXB X-ray 3.10 L 2-132 [» ]
2UXC X-ray 2.90 L 2-132 [» ]
2UXD X-ray 3.20 L 2-132 [» ]
2V46 X-ray 3.50 L 2-132 [» ]
2V48 X-ray 3.50 L 2-132 [» ]
2VQE X-ray 2.50 L 2-132 [» ]
2VQF X-ray 2.90 L 2-132 [» ]
2WDG X-ray 3.30 L 2-132 [» ]
2WDH X-ray 3.30 L 2-132 [» ]
2WDK X-ray 3.50 L 2-132 [» ]
2WDM X-ray 3.50 L 2-132 [» ]
2WH1 X-ray 3.45 L 1-132 [» ]
2WH3 X-ray 3.45 L 1-132 [» ]
2WRI X-ray 3.60 L 1-132 [» ]
2WRK X-ray 3.60 L 1-132 [» ]
2WRN X-ray 3.60 L 2-132 [» ]
2WRQ X-ray 3.60 L 2-132 [» ]
2X9R X-ray 3.10 L 1-132 [» ]
2X9T X-ray 3.10 L 1-132 [» ]
2XFZ X-ray 3.20 L 2-132 [» ]
2XG1 X-ray 3.20 L 2-132 [» ]
2XQD X-ray 3.10 L 2-132 [» ]
2XSY electron microscopy 7.80 L 1-132 [» ]
2XUY electron microscopy 7.60 L 1-132 [» ]
2Y0U X-ray 3.10 L 2-132 [» ]
2Y0W X-ray 3.10 L 2-132 [» ]
2Y0Y X-ray 3.10 L 1-132 [» ]
2Y10 X-ray 3.10 L 2-132 [» ]
2Y12 X-ray 3.10 L 1-132 [» ]
2Y14 X-ray 3.10 L 2-132 [» ]
2Y16 X-ray 3.10 L 2-132 [» ]
2Y18 X-ray 3.10 L 2-132 [» ]
2ZM6 X-ray 3.30 L 2-132 [» ]
3FIC electron microscopy 6.40 L 2-126 [» ]
3HUW X-ray 3.10 L 1-132 [» ]
3HUY X-ray 3.10 L 1-132 [» ]
3I8G X-ray 3.10 O 1-132 [» ]
3I8H X-ray 3.10 O 1-132 [» ]
3I9B X-ray 3.50 O 1-132 [» ]
3I9D X-ray 3.50 O 1-132 [» ]
3KIQ X-ray 3.30 l 1-132 [» ]
3KIS X-ray 3.30 l 1-132 [» ]
3KIU X-ray 3.60 l 1-132 [» ]
3KIX X-ray 3.60 l 1-132 [» ]
3KNH X-ray 3.00 L 1-132 [» ]
3KNJ X-ray 3.15 L 1-132 [» ]
3KNL X-ray 3.45 L 1-132 [» ]
3KNN X-ray 3.45 L 1-132 [» ]
3OGE X-ray 3.00 L 1-132 [» ]
3OGY X-ray 3.00 L 1-132 [» ]
3OHC X-ray 3.00 L 1-132 [» ]
3OHD X-ray 3.00 L 1-132 [» ]
3OHY X-ray 3.00 L 1-132 [» ]
3OI0 X-ray 3.00 L 1-132 [» ]
3OI2 X-ray 3.10 L 1-132 [» ]
3OI4 X-ray 3.10 L 1-132 [» ]
3OTO X-ray 3.69 L 2-132 [» ]
3T1H X-ray 3.11 L 1-132 [» ]
3T1Y X-ray 2.80 L 1-132 [» ]
3TVF X-ray 3.10 O 1-132 [» ]
3TVG X-ray 3.10 O 1-132 [» ]
3UXS X-ray 3.20 L 1-132 [» ]
3UXT X-ray 3.20 L 1-132 [» ]
3UYD X-ray 3.00 O 1-128 [» ]
3UYF X-ray 3.00 O 1-128 [» ]
3UZ3 X-ray 3.30 O 1-132 [» ]
3UZ4 X-ray 3.30 O 1-132 [» ]
3UZ6 X-ray 3.00 O 1-132 [» ]
3UZ7 X-ray 3.00 O 1-132 [» ]
3UZG X-ray 3.30 O 1-132 [» ]
3UZI X-ray 3.30 O 1-132 [» ]
3UZL X-ray 3.30 O 1-128 [» ]
3UZM X-ray 3.30 O 1-128 [» ]
3V22 X-ray 3.00 L 1-132 [» ]
3V24 X-ray 3.00 L 1-132 [» ]
3V26 X-ray 3.10 L 1-132 [» ]
3V28 X-ray 3.10 L 1-132 [» ]
3V2C X-ray 2.70 L 1-132 [» ]
3V2E X-ray 2.70 L 1-132 [» ]
3V6U X-ray 3.90 L 1-132 [» ]
3V6V X-ray 3.90 L 1-132 [» ]
3ZN7 X-ray 3.10 L 2-132 [» ]
3ZND X-ray 3.10 L 2-132 [» ]
3ZVO X-ray 3.80 L 2-132 [» ]
4ABR X-ray 3.10 L 2-132 [» ]
4AQY X-ray 3.50 L 2-132 [» ]
4B3M X-ray 2.90 L 1-132 [» ]
4B3R X-ray 3.00 L 1-132 [» ]
4B3S X-ray 3.15 L 1-132 [» ]
4B3T X-ray 3.00 L 1-132 [» ]
4B8F X-ray 3.70 L 1-132 [» ]
4B8H X-ray 3.70 L 1-132 [» ]
4BYD X-ray 3.35 L 1-132 [» ]
4CR1 X-ray 2.95 L 1-132 [» ]
4DH9 X-ray 3.20 L 1-132 [» ]
4DHB X-ray 3.20 L 1-132 [» ]
4DUY X-ray 3.39 L 2-132 [» ]
4DUZ X-ray 3.65 L 2-132 [» ]
4DV0 X-ray 3.85 L 2-132 [» ]
4DV1 X-ray 3.85 L 2-132 [» ]
4DV2 X-ray 3.65 L 2-132 [» ]
4DV3 X-ray 3.55 L 2-132 [» ]
4DV4 X-ray 3.65 L 2-132 [» ]
4DV5 X-ray 3.68 L 2-132 [» ]
4DV6 X-ray 3.30 L 2-132 [» ]
4DV7 X-ray 3.29 L 2-132 [» ]
4EJ9 X-ray 3.52 L 1-132 [» ]
4EJA X-ray 3.52 L 1-132 [» ]
4G5K X-ray 3.30 O 1-127 [» ]
4G5M X-ray 3.30 O 1-127 [» ]
4G5T X-ray 3.10 O 1-127 [» ]
4G5V X-ray 3.10 O 1-127 [» ]
4GKJ X-ray 3.30 L 2-125 [» ]
4GKK X-ray 3.20 L 2-125 [» ]
4JI0 X-ray 3.49 L 2-132 [» ]
4JI1 X-ray 3.14 L 2-132 [» ]
4JI2 X-ray 3.64 L 2-132 [» ]
4JI3 X-ray 3.35 L 2-132 [» ]
4JI4 X-ray 3.69 L 2-132 [» ]
4JI5 X-ray 3.85 L 2-132 [» ]
4JI6 X-ray 3.55 L 2-132 [» ]
4JI7 X-ray 3.50 L 2-132 [» ]
4JI8 X-ray 3.74 L 2-132 [» ]
4JUW X-ray 2.86 L 2-125 [» ]
4JV5 X-ray 3.16 L 2-126 [» ]
4JYA X-ray 3.10 L 2-126 [» ]
4K0K X-ray 3.40 L 2-127 [» ]
4K0L X-ray 3.30 L 2-125 [» ]
4K0P X-ray 3.30 L 2-125 [» ]
4KHP X-ray 3.10 L 2-126 [» ]
4KWZ X-ray 3.44 L 1-132 [» ]
4KX1 X-ray 3.44 L 1-132 [» ]
4NVU X-ray 3.00 L 1-132 [» ]
4NVW X-ray 3.00 L 1-132 [» ]
4NVY X-ray 3.10 L 1-132 [» ]
4NW0 X-ray 3.10 L 1-132 [» ]
4OX9 X-ray 3.80 L 1-131 [» ]
4QCM X-ray 2.60 L 1-132 [» ]
4QCO X-ray 2.60 L 1-132 [» ]
4QCQ X-ray 2.55 L 1-132 [» ]
4QCS X-ray 2.55 L 1-132 [» ]
4QCU X-ray 2.90 L 1-132 [» ]
4QCW X-ray 2.90 L 1-132 [» ]
4QCY X-ray 2.80 L 1-132 [» ]
4QD0 X-ray 2.80 L 1-132 [» ]
ProteinModelPortali Q5SHN3.
SMRi Q5SHN3. Positions 2-126.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1697.

Proteomic databases

PRIDEi Q5SHN3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71520 ; BAD71520 ; BAD71520 .
GeneIDi 3169892.
KEGGi ttj:TTHA1697.
PATRICi 23958349. VBITheThe93045_1667.

Phylogenomic databases

eggNOGi COG0048.
HOGENOMi HOG000040063.
KOi K02950.
OMAi PALQWGY.
OrthoDBi EOG61ZTNF.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1736-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5SHN3.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
HAMAPi MF_00403_B. Ribosomal_S12_B.
InterProi IPR012340. NA-bd_OB-fold.
IPR006032. Ribosomal_S12/S23.
IPR005679. Ribosomal_S12_bac.
[Graphical view ]
PANTHERi PTHR11652. PTHR11652. 1 hit.
Pfami PF00164. Ribosom_S12_S23. 1 hit.
[Graphical view ]
PIRSFi PIRSF002133. Ribosomal_S12/S23. 1 hit.
PRINTSi PR01034. RIBOSOMALS12.
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00981. rpsL_bact. 1 hit.
PROSITEi PS00055. RIBOSOMAL_S12. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of the Thermus thermophilus HB8 rps12 and rps7 genes coding for the ribosomal proteins S12 and S7."
    Yakhnin A.V., Vorozheykina D.P., Matvienko N.I.
    Nucleic Acids Res. 18:3659-3659(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  3. "Purification and characterization of the 30S ribosomal proteins from the bacterium Thermus thermophilus."
    Tsiboli P., Herfurth E., Choli T.
    Eur. J. Biochem. 226:169-177(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-29.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: METHYLTHIOLATION AT ASP-89, MASS SPECTROMETRY.
  5. Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.
  6. "Structure of functionally activated small ribosomal subunit at 3.3 A resolution."
    Schluenzen F., Tocilj A., Zarivach R., Harms J., Gluehmann M., Janell D., Bashan A., Bartels H., Agmon I., Franceschi F., Yonath A.
    Cell 102:615-623(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
  7. "The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit."
    Brodersen D.E., Clemons W.M. Jr., Carter A.P., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
    Cell 103:1143-1154(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE 30S SUBUNIT.
  8. "Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics."
    Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V.
    Nature 407:340-348(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 30S SUBUNIT.
  9. "The path of messenger RNA through the ribosome."
    Yusupova G.Z., Yusupov M.M., Cate J.H.D., Noller H.F.
    Cell 106:233-241(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.00 ANGSTROMS) OF THE RIBOSOME.
  10. "Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3."
    Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F.
    EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
  11. "Crystal structure of an initiation factor bound to the 30S ribosomal subunit."
    Carter A.P., Clemons W.M. Jr., Brodersen D.E., Morgan-Warren R.J., Hartsch T., Wimberly B.T., Ramakrishnan V.
    Science 291:498-501(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF THE 30S SUBUNIT.
  12. Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF THE RIBOSOME.
  13. "Recognition of cognate transfer RNA by the 30S ribosomal subunit."
    Ogle J.M., Brodersen D.E., Clemons W.M. Jr., Tarry M.J., Carter A.P., Ramakrishnan V.
    Science 292:897-902(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.11 ANGSTROMS) OF THE 30S SUBUNIT.
  14. "Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16S RNA."
    Brodersen D.E., Clemons W.M. Jr., Carter A.P., Wimberly B.T., Ramakrishnan V.
    J. Mol. Biol. 316:725-768(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.05 ANGSTROMS) OF THE 30S SUBUNIT.

Entry informationi

Entry nameiRS12_THET8
AccessioniPrimary (citable) accession number: Q5SHN3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 96 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3