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Q5SD20

- RK22_HUPLU

UniProt

Q5SD20 - RK22_HUPLU

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Protein
50S ribosomal protein L22, chloroplastic
Gene
rpl22
Organism
Huperzia lucidula (Shining clubmoss) (Lycopodium lucidulum)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

This protein binds specifically to 23S rRNA By similarity.UniRule annotation
The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome By similarity.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L22, chloroplastic
Gene namesi
Name:rpl22
Encoded oniPlastid; Chloroplast
OrganismiHuperzia lucidula (Shining clubmoss) (Lycopodium lucidulum)
Taxonomic identifieri37429 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiophytaLycopodiopsidaLycopodialesLycopodiaceaeHuperzia

Subcellular locationi

GO - Cellular componenti

  1. chloroplast Source: UniProtKB-SubCell
  2. large ribosomal subunit Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12512550S ribosomal protein L22, chloroplasticUniRule annotation
PRO_0000125307Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit By similarity.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliQ5SD20.

Family & Domainsi

Sequence similaritiesi

Family and domain databases

Gene3Di3.90.470.10. 1 hit.
HAMAPiMF_01331_B. Ribosomal_L22_B.
InterProiIPR001063. Ribosomal_L22.
IPR018260. Ribosomal_L22/L17_CS.
IPR005727. Ribosomal_L22_bac/chlpt-type.
[Graphical view]
PANTHERiPTHR13501. PTHR13501. 1 hit.
PfamiPF00237. Ribosomal_L22. 1 hit.
[Graphical view]
SUPFAMiSSF54843. SSF54843. 1 hit.
TIGRFAMsiTIGR01044. rplV_bact. 1 hit.
PROSITEiPS00464. RIBOSOMAL_L22. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5SD20-1 [UniParc]FASTAAdd to Basket

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MKIGNDSNKE VKIFVKNIHM SAYKLRRVVN QIRGHSYGEA VMILEFMPYR    50
ACYPVLKLVS NAAENANHKM GLRKADLFVS EVKVDAGSFA KRLRLRAQGR 100
NYPIHKPTCH ITIILKKKSV YKEEL 125
Length:125
Mass (Da):14,374
Last modified:December 21, 2004 - v1
Checksum:iB397386E153825D3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY660566 Genomic DNA. Translation: AAT80685.1.
RefSeqiYP_209489.1. NC_006861.1.

Genome annotation databases

GeneIDi3283768.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY660566 Genomic DNA. Translation: AAT80685.1 .
RefSeqi YP_209489.1. NC_006861.1.

3D structure databases

ProteinModelPortali Q5SD20.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 3283768.

Family and domain databases

Gene3Di 3.90.470.10. 1 hit.
HAMAPi MF_01331_B. Ribosomal_L22_B.
InterProi IPR001063. Ribosomal_L22.
IPR018260. Ribosomal_L22/L17_CS.
IPR005727. Ribosomal_L22_bac/chlpt-type.
[Graphical view ]
PANTHERi PTHR13501. PTHR13501. 1 hit.
Pfami PF00237. Ribosomal_L22. 1 hit.
[Graphical view ]
SUPFAMi SSF54843. SSF54843. 1 hit.
TIGRFAMsi TIGR01044. rplV_bact. 1 hit.
PROSITEi PS00464. RIBOSOMAL_L22. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae)."
    Wolf P.G., Karol K.G., Mandoli D.F., Kuehl J.V., Arumuganathan K., Ellis M.W., Mishler B.D., Kelch D.G., Olmstead R.G., Boore J.L.
    Gene 350:117-128(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiRK22_HUPLU
AccessioniPrimary (citable) accession number: Q5SD20
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 21, 2005
Last sequence update: December 21, 2004
Last modified: May 14, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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