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Q5SD20

- RK22_HUPLU

UniProt

Q5SD20 - RK22_HUPLU

Protein

50S ribosomal protein L22, chloroplastic

Gene

rpl22

Organism
Huperzia lucidula (Shining clubmoss) (Lycopodium lucidulum)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    This protein binds specifically to 23S rRNA.By similarity
    The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.By similarity

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L22, chloroplastic
    Gene namesi
    Name:rpl22
    Encoded oniPlastid; Chloroplast
    OrganismiHuperzia lucidula (Shining clubmoss) (Lycopodium lucidulum)
    Taxonomic identifieri37429 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiidaeLycopodialesLycopodiaceaeHuperzia

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast Source: UniProtKB-SubCell
    2. large ribosomal subunit Source: InterPro

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 12512550S ribosomal protein L22, chloroplasticPRO_0000125307Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliQ5SD20.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L22P family.Curated

    Family and domain databases

    Gene3Di3.90.470.10. 1 hit.
    HAMAPiMF_01331_B. Ribosomal_L22_B.
    InterProiIPR001063. Ribosomal_L22.
    IPR018260. Ribosomal_L22/L17_CS.
    IPR005727. Ribosomal_L22_bac/chlpt-type.
    [Graphical view]
    PANTHERiPTHR13501. PTHR13501. 1 hit.
    PfamiPF00237. Ribosomal_L22. 1 hit.
    [Graphical view]
    SUPFAMiSSF54843. SSF54843. 1 hit.
    TIGRFAMsiTIGR01044. rplV_bact. 1 hit.
    PROSITEiPS00464. RIBOSOMAL_L22. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5SD20-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKIGNDSNKE VKIFVKNIHM SAYKLRRVVN QIRGHSYGEA VMILEFMPYR    50
    ACYPVLKLVS NAAENANHKM GLRKADLFVS EVKVDAGSFA KRLRLRAQGR 100
    NYPIHKPTCH ITIILKKKSV YKEEL 125
    Length:125
    Mass (Da):14,374
    Last modified:December 21, 2004 - v1
    Checksum:iB397386E153825D3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY660566 Genomic DNA. Translation: AAT80685.1.
    RefSeqiYP_209489.1. NC_006861.1.

    Genome annotation databases

    GeneIDi3283768.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY660566 Genomic DNA. Translation: AAT80685.1 .
    RefSeqi YP_209489.1. NC_006861.1.

    3D structure databases

    ProteinModelPortali Q5SD20.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 3283768.

    Family and domain databases

    Gene3Di 3.90.470.10. 1 hit.
    HAMAPi MF_01331_B. Ribosomal_L22_B.
    InterProi IPR001063. Ribosomal_L22.
    IPR018260. Ribosomal_L22/L17_CS.
    IPR005727. Ribosomal_L22_bac/chlpt-type.
    [Graphical view ]
    PANTHERi PTHR13501. PTHR13501. 1 hit.
    Pfami PF00237. Ribosomal_L22. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54843. SSF54843. 1 hit.
    TIGRFAMsi TIGR01044. rplV_bact. 1 hit.
    PROSITEi PS00464. RIBOSOMAL_L22. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae)."
      Wolf P.G., Karol K.G., Mandoli D.F., Kuehl J.V., Arumuganathan K., Ellis M.W., Mishler B.D., Kelch D.G., Olmstead R.G., Boore J.L.
      Gene 350:117-128(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiRK22_HUPLU
    AccessioniPrimary (citable) accession number: Q5SD20
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 21, 2005
    Last sequence update: December 21, 2004
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3