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Unreviewed, UniProtKB/TrEMBL Q5S1W7 (Q5S1W7_XENLA)

Last modified February 9, 2010. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

Names and origin

Protein namesRecommended name:
    Major prion protein RuleBase RU003882V4
OrganismXenopus laevis (African clawed frog) EMBL AAV54126.1
Taxonomic identifier8355 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraMesobatrachiaPipoideaPipidaeXenopodinaeXenopusXenopus

Protein attributes

Sequence length171 AA.
Sequence statusFragment.
Protein existenceEvidence at protein level.

General annotation (Comments)

Sequence similarities

Belongs to the prion family.

Ontologies

Keywords
   Cellular componentAmyloid
Cell membrane RuleBase RU003882V4 Spearmint SPM000817
Membrane
   Molecular functionPrion RuleBase RU003882V4 EMBL AAV54126.1
Gene Ontology (GO)
   Biological processprotein homooligomerization

Inferred from electronic annotation. Source: InterPro

   Cellular componentplasma membrane

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AAV54126.1
Non-terminal residue1711 EMBL AAV54126.1

Sequences

Sequence LengthMass (Da)Tools
Q5S1W7-1 [UniParc].

Last modified December 21, 2004. Version 1.
Checksum: AB581613644F2406

FASTA17119,241
        10         20         30         40         50         60 
KKSGGGKSKT GGWNTGSNRN PNYPGGYPGN TGGSWGQQPY NPSGYNKQWK PPKSKTNMKS 

        70         80         90        100        110        120 
VAIGAAAGAI GGYMLGNAVG RMSYQFNNPM ESRYYNDYYN QMPNRVYRPM YRGEEYVSED 

       130        140        150        160        170 
RFVRDCYNMS VTEYIIKPAE GKNNSELNQL DTTVKSQIIR EMCITEYRRG S 

« Hide

References

[1]Perez D.R., Wuthrich K.
Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Prion protein NMR structures of chickens, turtles, and frogs."
Calzolai L., Lysek D.A., Perez D.R., Guentert P., Wuethrich K.
Proc. Natl. Acad. Sci. U.S.A. 102:651-655(2005) [PubMed: 15647366] [Abstract]
Cited for: STRUCTURE BY NMR OF 43-171.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY788895 mRNA. Translation: AAV54126.1.
UniGeneXl.34455

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1XU0NMR-A43-171[»]
ModBaseSearch...

Phylogenomic databases

HOVERGENQ5S1W7.

Family and domain databases

InterProIPR000817. Prion.
[Graphical view]
Gene3DG3DSA:1.10.790.10. Prion. 1 hit.
PANTHERPTHR11522. Prion. 1 hit.
PfamPF00377. Prion. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5S1W7_XENLA
AccessionPrimary (citable) accession number: Q5S1W7
Entry history
Integrated into UniProtKB/TrEMBL: December 21, 2004
Last sequence update: December 21, 2004
Last modified: February 9, 2010
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information